Wall clock time and date at job start Mon Mar 30 2020 05:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46873 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46783 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.46772 * 180.02562 * 12 11 10 14 14 C 1.46898 * 111.00074 * 180.02562 * 13 12 11 15 15 C 1.52992 * 109.47397 * 180.02562 * 14 13 12 16 16 H 1.09009 * 109.58221 * 294.99784 * 15 14 13 17 17 C 1.53235 * 109.58453 * 174.72957 * 15 14 13 18 18 N 1.47275 * 108.80215 * 240.20873 * 17 15 14 19 19 C 1.47318 * 110.15655 * 299.18458 * 18 17 15 20 20 C 1.53482 * 108.83916 * 60.74121 * 19 18 17 21 21 N 1.47271 * 109.58586 * 55.27055 * 15 14 13 22 22 C 1.47582 * 110.00300 * 59.11949 * 21 15 14 23 23 C 1.47322 * 110.15711 * 60.80283 * 18 17 15 24 24 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 26 26 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 27 27 H 1.09004 * 109.47139 * 299.99623 * 10 9 7 28 28 H 1.08997 * 109.47675 * 60.00023 * 10 9 7 29 29 H 1.08994 * 109.47272 * 300.00031 * 11 10 9 30 30 H 1.09003 * 109.46507 * 60.00134 * 11 10 9 31 31 H 1.08994 * 109.47548 * 300.00237 * 12 11 10 32 32 H 1.08997 * 109.47413 * 60.00544 * 12 11 10 33 33 H 1.00900 * 110.99838 * 303.95186 * 13 12 11 34 34 H 1.09007 * 109.46787 * 300.00098 * 14 13 12 35 35 H 1.08997 * 109.47292 * 59.99771 * 14 13 12 36 36 H 1.08996 * 109.57909 * 0.02562 * 17 15 14 37 37 H 1.09001 * 109.58222 * 120.41479 * 17 15 14 38 38 H 1.09005 * 109.57803 * 180.60288 * 19 18 17 39 39 H 1.08998 * 109.57964 * 301.00960 * 19 18 17 40 40 H 1.08997 * 109.54156 * 240.29794 * 20 19 18 41 41 H 1.08999 * 109.76920 * 119.93808 * 20 19 18 42 42 H 1.08999 * 109.54746 * 300.89380 * 22 21 15 43 43 H 1.09006 * 109.65662 * 180.60252 * 22 21 15 44 44 H 1.09006 * 109.57919 * 58.98065 * 23 18 17 45 45 H 1.08991 * 109.58240 * 179.38971 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0009 12 6 6.0616 -4.0790 0.0015 13 7 7.5306 -4.0789 0.0020 14 6 8.0571 -5.4503 0.0019 15 6 9.5865 -5.4095 0.0032 16 1 9.9409 -4.9656 -0.9272 17 6 10.1382 -6.8330 0.1357 18 7 10.9514 -6.9147 1.3609 19 6 12.0815 -5.9728 1.2839 20 6 11.5299 -4.5469 1.1493 21 7 10.0580 -4.6066 1.1442 22 6 9.5710 -5.1915 2.4086 23 6 10.1225 -6.6147 2.5413 24 1 -0.4850 0.8400 -0.0004 25 1 3.8753 -0.6803 -0.8889 26 1 3.8746 -0.6799 0.8911 27 1 3.6579 -3.1505 0.8908 28 1 3.6587 -3.1502 -0.8892 29 1 5.9150 -2.1226 -0.8890 30 1 5.9149 -2.1227 0.8910 31 1 5.6983 -4.5925 0.8916 32 1 5.6983 -4.5931 -0.8883 33 1 7.8925 -3.5530 -0.7793 34 1 7.7072 -5.9739 0.8917 35 1 7.7080 -5.9735 -0.8883 36 1 9.3116 -7.5408 0.1975 37 1 10.7576 -7.0668 -0.7302 38 1 12.6826 -6.0487 2.1900 39 1 12.6955 -6.2092 0.4148 40 1 11.8809 -4.1068 0.2159 41 1 11.8680 -3.9400 1.9891 42 1 8.4815 -5.2211 2.4010 43 1 9.9142 -4.5871 3.2483 44 1 9.2959 -7.3231 2.5967 45 1 10.7305 -6.6884 3.4428 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394662993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:42 Heat of formation + Delta-G solvation = 13.774484 kcal Electronic energy + Delta-G solvation = -20598.700566 eV Core-core repulsion = 17650.720038 eV Total energy + Delta-G solvation = -2947.980528 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.39018 -36.82500 -34.54693 -33.23661 -32.49261 -31.40481 -31.39559 -28.71358 -25.91818 -24.33029 -23.57532 -23.47630 -21.96236 -21.16559 -19.95608 -18.32237 -17.43602 -16.88195 -16.58365 -16.19857 -15.66736 -14.56186 -14.47214 -14.20597 -13.91499 -13.45428 -13.36174 -13.34740 -13.13712 -12.67518 -12.65242 -12.59122 -12.26508 -12.11946 -11.71626 -11.51629 -11.10191 -10.92665 -10.85733 -10.72660 -10.68874 -10.51880 -10.06788 -9.83784 -9.63358 -9.43908 -9.10928 -8.49120 -8.30370 -7.95499 -5.99958 -3.97349 3.34488 3.36537 3.41611 3.47003 3.80880 4.06688 4.31444 4.40673 4.49919 4.55845 4.64813 4.82681 5.00827 5.05099 5.16394 5.19846 5.25718 5.30692 5.34139 5.37044 5.42013 5.45524 5.49986 5.52082 5.60905 5.71993 5.77106 5.87201 6.08717 6.16222 6.30750 6.35336 6.43248 6.72000 6.82139 6.84107 6.86763 6.96193 7.16847 7.38832 7.45665 7.52448 7.85712 8.59576 9.05425 9.63229 11.13694 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.042139 B = 0.002831 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.315867 B = 9886.825771 C =10115.412177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.265 1.265 6 H -0.288 1.288 7 C -0.519 4.519 8 H 0.070 0.930 9 C -0.014 4.014 10 C -0.101 4.101 11 C -0.116 4.116 12 C 0.059 3.941 13 N -0.674 5.674 14 C 0.069 3.931 15 C 0.043 3.957 16 H 0.084 0.916 17 C 0.015 3.985 18 N -0.517 5.517 19 C 0.009 3.991 20 C 0.008 3.992 21 N -0.487 5.487 22 C 0.012 3.988 23 C 0.008 3.992 24 H 0.262 0.738 25 H 0.009 0.991 26 H 0.015 0.985 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.024 0.976 33 H 0.339 0.661 34 H 0.070 0.930 35 H 0.032 0.968 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.646 -13.913 1.767 29.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.137 4.137 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.189 1.189 6 H -0.215 1.215 7 C -0.557 4.557 8 H 0.088 0.912 9 C -0.051 4.051 10 C -0.139 4.139 11 C -0.154 4.154 12 C -0.069 4.069 13 N -0.304 5.304 14 C -0.061 4.061 15 C -0.067 4.067 16 H 0.103 0.897 17 C -0.116 4.116 18 N -0.238 5.238 19 C -0.121 4.121 20 C -0.122 4.122 21 N -0.207 5.207 22 C -0.117 4.117 23 C -0.121 4.121 24 H 0.072 0.928 25 H 0.028 0.972 26 H 0.034 0.966 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.157 0.843 34 H 0.089 0.911 35 H 0.050 0.950 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 25.533 -13.724 2.457 29.091 hybrid contribution 0.143 0.626 -0.958 1.153 sum 25.676 -13.098 1.499 28.863 Atomic orbital electron populations 1.69925 1.06320 1.26811 1.51521 1.25057 0.94740 0.99235 0.94649 0.86755 0.80419 0.83535 0.78455 1.20373 1.18916 1.21460 1.21201 0.89742 0.94377 1.50413 0.91161 1.19567 0.96886 0.92535 0.96136 1.21416 0.91957 0.99721 1.00822 1.21642 0.97283 0.94581 1.01913 1.22056 0.86542 0.98396 0.99953 1.60397 1.07522 1.12355 1.50135 1.22029 0.92459 0.91232 1.00360 1.22486 0.95760 0.93116 0.95382 0.89748 1.22939 0.98185 0.96995 0.93445 1.63923 1.09159 1.48079 1.02645 1.22963 0.93953 0.91995 1.03196 1.22988 0.88989 0.96760 1.03434 1.63955 1.07422 1.47563 1.01806 1.22938 1.02124 0.94010 0.92676 1.22933 0.97939 0.97469 0.93807 0.92824 0.97238 0.96640 0.92894 0.93169 0.92841 0.91642 0.91457 0.95788 0.84322 0.91119 0.94962 0.89926 0.90166 0.90281 0.90376 0.90363 0.90128 0.89103 0.90425 0.90269 0.90324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.58 13.96 55.43 0.77 -27.81 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.31 27.47 -169.99 -4.67 17.64 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.52 -15.25 9.66 -34.44 -0.33 -15.58 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 10 C -0.10 -2.03 5.15 -26.73 -0.14 -2.17 16 11 C -0.12 -1.90 5.47 -26.73 -0.15 -2.05 16 12 C 0.06 0.81 5.69 -3.82 -0.02 0.79 16 13 N -0.67 -8.02 6.24 -113.78 -0.71 -8.73 16 14 C 0.07 0.68 4.34 -3.83 -0.02 0.66 16 15 C 0.04 0.38 2.66 -67.39 -0.18 0.20 16 16 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 17 C 0.02 0.12 5.80 -3.50 -0.02 0.10 16 18 N -0.52 -4.38 5.44 -233.00 -1.27 -5.65 16 19 C 0.01 0.07 6.14 -3.34 -0.02 0.05 16 20 C 0.01 0.07 6.15 -3.35 -0.02 0.05 16 21 N -0.49 -4.69 5.00 -224.84 -1.12 -5.81 16 22 C 0.01 0.11 5.75 -3.34 -0.02 0.09 16 23 C 0.01 0.07 6.13 -3.49 -0.02 0.05 16 24 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 25 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 26 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.34 3.93 8.73 -39.29 -0.34 3.59 16 34 H 0.07 0.72 6.58 -51.93 -0.34 0.38 16 35 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.65 7.61 -51.93 -0.40 0.26 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.09 0.95 6.28 -51.93 -0.33 0.62 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 341.86 15.07 5.15 5.15 Total: -1.00 -31.34 341.86 -11.51 -42.85 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -8.52 Total: -1.18 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: -1.15 Total: -16.47 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: -2.33 Total: -48.00 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.34 -11.51 -42.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394662993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.624 kcal (2) G-P(sol) polarization free energy of solvation -31.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds