Wall clock time and date at job start Mon Mar 30 2020 05:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46873 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46783 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.46772 * 180.02562 * 12 11 10 14 14 C 1.46898 * 111.00074 * 180.02562 * 13 12 11 15 15 C 1.52992 * 109.47397 * 180.02562 * 14 13 12 16 16 H 1.09009 * 109.58221 * 294.99784 * 15 14 13 17 17 C 1.53235 * 109.58453 * 174.72957 * 15 14 13 18 18 N 1.47275 * 108.80215 * 240.20873 * 17 15 14 19 19 C 1.47318 * 110.15655 * 299.18458 * 18 17 15 20 20 C 1.53482 * 108.83916 * 60.74121 * 19 18 17 21 21 N 1.47271 * 109.58586 * 55.27055 * 15 14 13 22 22 C 1.47582 * 110.00300 * 59.11949 * 21 15 14 23 23 C 1.47322 * 110.15711 * 60.80283 * 18 17 15 24 24 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 26 26 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 27 27 H 1.09004 * 109.47139 * 299.99623 * 10 9 7 28 28 H 1.08997 * 109.47675 * 60.00023 * 10 9 7 29 29 H 1.08994 * 109.47272 * 300.00031 * 11 10 9 30 30 H 1.09003 * 109.46507 * 60.00134 * 11 10 9 31 31 H 1.08994 * 109.47548 * 300.00237 * 12 11 10 32 32 H 1.08997 * 109.47413 * 60.00544 * 12 11 10 33 33 H 1.00900 * 110.99838 * 303.95186 * 13 12 11 34 34 H 1.09007 * 109.46787 * 300.00098 * 14 13 12 35 35 H 1.08997 * 109.47292 * 59.99771 * 14 13 12 36 36 H 1.08996 * 109.57909 * 0.02562 * 17 15 14 37 37 H 1.09001 * 109.58222 * 120.41479 * 17 15 14 38 38 H 1.09005 * 109.57803 * 180.60288 * 19 18 17 39 39 H 1.08998 * 109.57964 * 301.00960 * 19 18 17 40 40 H 1.08997 * 109.54156 * 240.29794 * 20 19 18 41 41 H 1.08999 * 109.76920 * 119.93808 * 20 19 18 42 42 H 1.08999 * 109.54746 * 300.89380 * 22 21 15 43 43 H 1.09006 * 109.65662 * 180.60252 * 22 21 15 44 44 H 1.09006 * 109.57919 * 58.98065 * 23 18 17 45 45 H 1.08991 * 109.58240 * 179.38971 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0009 12 6 6.0616 -4.0790 0.0015 13 7 7.5306 -4.0789 0.0020 14 6 8.0571 -5.4503 0.0019 15 6 9.5865 -5.4095 0.0032 16 1 9.9409 -4.9656 -0.9272 17 6 10.1382 -6.8330 0.1357 18 7 10.9514 -6.9147 1.3609 19 6 12.0815 -5.9728 1.2839 20 6 11.5299 -4.5469 1.1493 21 7 10.0580 -4.6066 1.1442 22 6 9.5710 -5.1915 2.4086 23 6 10.1225 -6.6147 2.5413 24 1 -0.4850 0.8400 -0.0004 25 1 3.8753 -0.6803 -0.8889 26 1 3.8746 -0.6799 0.8911 27 1 3.6579 -3.1505 0.8908 28 1 3.6587 -3.1502 -0.8892 29 1 5.9150 -2.1226 -0.8890 30 1 5.9149 -2.1227 0.8910 31 1 5.6983 -4.5925 0.8916 32 1 5.6983 -4.5931 -0.8883 33 1 7.8925 -3.5530 -0.7793 34 1 7.7072 -5.9739 0.8917 35 1 7.7080 -5.9735 -0.8883 36 1 9.3116 -7.5408 0.1975 37 1 10.7576 -7.0668 -0.7302 38 1 12.6826 -6.0487 2.1900 39 1 12.6955 -6.2092 0.4148 40 1 11.8809 -4.1068 0.2159 41 1 11.8680 -3.9400 1.9891 42 1 8.4815 -5.2211 2.4010 43 1 9.9142 -4.5871 3.2483 44 1 9.2959 -7.3231 2.5967 45 1 10.7305 -6.6884 3.4428 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394662993.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:41 Heat of formation + Delta-G solvation = -10.348305 kcal Electronic energy + Delta-G solvation = -20599.746609 eV Core-core repulsion = 17650.720038 eV Total energy + Delta-G solvation = -2949.026570 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.04067 -37.92539 -36.06371 -34.48115 -33.76683 -32.60215 -32.03087 -30.23357 -27.12606 -25.39497 -24.53300 -24.17826 -22.72700 -22.59601 -21.65960 -19.00397 -18.83618 -18.11417 -17.50713 -16.95865 -16.67139 -16.33508 -15.69056 -15.49289 -14.89342 -14.64730 -14.35104 -14.09075 -13.99292 -13.95434 -13.74367 -13.47221 -13.40294 -13.21114 -12.98767 -12.84836 -12.59736 -12.26104 -12.07671 -11.74412 -11.63047 -11.48639 -11.41901 -11.35105 -11.30347 -11.12031 -10.76396 -10.72359 -9.23560 -8.60992 -8.29920 -6.33995 1.35606 1.37923 1.50729 2.36574 2.72705 3.05374 3.11981 3.26967 3.65022 3.77737 3.93495 3.94888 4.10354 4.18382 4.21000 4.33571 4.43024 4.50411 4.53745 4.56543 4.62583 4.66888 4.69608 4.76365 4.78211 4.82564 4.89114 4.92658 4.97332 5.02266 5.09582 5.14972 5.21700 5.27626 5.57973 5.65830 5.67255 5.68694 5.72200 6.11849 6.20570 6.26220 6.29430 6.55018 6.74296 7.30867 8.87104 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.042139 B = 0.002831 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.315867 B = 9886.825771 C =10115.412177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.000 4.000 3 Si 0.954 3.046 4 H -0.265 1.265 5 H -0.247 1.247 6 H -0.283 1.283 7 C -0.535 4.535 8 H 0.030 0.970 9 C -0.012 4.012 10 C -0.095 4.095 11 C -0.103 4.103 12 C 0.070 3.930 13 N -0.677 5.677 14 C 0.073 3.927 15 C 0.050 3.950 16 H 0.087 0.913 17 C 0.019 3.981 18 N -0.526 5.526 19 C 0.013 3.987 20 C 0.010 3.990 21 N -0.505 5.505 22 C 0.016 3.984 23 C 0.013 3.987 24 H 0.266 0.734 25 H 0.017 0.983 26 H 0.017 0.983 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.027 0.973 33 H 0.343 0.657 34 H 0.065 0.935 35 H 0.040 0.960 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.260 -13.590 1.472 31.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.171 1.171 6 H -0.209 1.209 7 C -0.573 4.573 8 H 0.048 0.952 9 C -0.049 4.049 10 C -0.133 4.133 11 C -0.141 4.141 12 C -0.059 4.059 13 N -0.308 5.308 14 C -0.057 4.057 15 C -0.061 4.061 16 H 0.105 0.895 17 C -0.112 4.112 18 N -0.247 5.247 19 C -0.117 4.117 20 C -0.119 4.119 21 N -0.226 5.226 22 C -0.114 4.114 23 C -0.117 4.117 24 H 0.075 0.925 25 H 0.036 0.964 26 H 0.035 0.965 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.046 0.954 33 H 0.161 0.839 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 28.168 -13.423 2.160 31.278 hybrid contribution -0.730 0.452 -0.859 1.214 sum 27.438 -12.972 1.302 30.378 Atomic orbital electron populations 1.70080 1.08342 1.28188 1.52828 1.26086 0.95679 1.03730 0.94100 0.85596 0.79435 0.77967 0.79276 1.19007 1.17076 1.20883 1.21577 0.92430 0.93046 1.50260 0.95204 1.19538 0.93594 0.95484 0.96327 1.21292 0.94827 0.96810 1.00357 1.21452 0.94105 0.96567 1.02005 1.21831 0.87772 0.96342 0.99971 1.60343 1.06239 1.13795 1.50439 1.22029 0.93226 0.89978 1.00438 1.22423 0.94821 0.93645 0.95245 0.89483 1.22922 0.98302 0.96326 0.93656 1.63940 1.09496 1.48501 1.02797 1.22973 0.93627 0.91246 1.03881 1.22994 0.88021 0.97257 1.03676 1.63933 1.08540 1.48095 1.02040 1.22846 1.01165 0.94710 0.92646 1.22887 0.98006 0.96660 0.94104 0.92493 0.96427 0.96452 0.93618 0.93525 0.92074 0.92127 0.91858 0.95443 0.83938 0.91648 0.94177 0.89957 0.89232 0.89726 0.89582 0.89983 0.90091 0.90623 0.90614 0.90335 0.89663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.33 13.96 21.45 0.30 -61.03 16 2 C 0.00 0.02 5.47 84.65 0.46 0.49 16 3 Si 0.95 45.48 27.47 68.60 1.88 47.37 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 6 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 7 C -0.54 -32.01 9.66 25.60 0.25 -31.77 16 8 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 9 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 10 C -0.09 -3.77 5.15 30.60 0.16 -3.61 16 11 C -0.10 -3.21 5.47 30.60 0.17 -3.04 16 12 C 0.07 1.80 5.69 86.30 0.49 2.29 16 13 N -0.68 -14.95 6.24 -513.90 -3.21 -18.15 16 14 C 0.07 1.31 4.34 86.30 0.37 1.68 16 15 C 0.05 0.78 2.66 44.92 0.12 0.90 16 16 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 17 C 0.02 0.26 5.80 86.31 0.50 0.76 16 18 N -0.53 -7.91 5.44 -891.07 -4.85 -12.76 16 19 C 0.01 0.16 6.14 86.39 0.53 0.69 16 20 C 0.01 0.15 6.15 86.39 0.53 0.68 16 21 N -0.50 -8.93 5.00 -865.26 -4.32 -13.25 16 22 C 0.02 0.28 5.75 86.24 0.50 0.78 16 23 C 0.01 0.20 6.13 86.29 0.53 0.73 16 24 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 25 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 26 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 27 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.34 7.22 8.73 -89.69 -0.78 6.43 16 34 H 0.07 1.26 6.58 -2.38 -0.02 1.24 16 35 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.08 1.15 7.61 -2.39 -0.02 1.13 16 37 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.08 1.53 6.28 -2.39 -0.01 1.52 16 43 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 44 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 45 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -67.16 341.86 -5.37 -72.53 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.09 Total: 15.19 kcal Atomic # 6 Polarization: -34.63 SS G_CDS: 4.73 Total: -29.90 kcal Atomic # 7 Polarization: -93.11 SS G_CDS: -12.08 Total: -105.19 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.88 Total: 47.37 kcal Total: -67.16 -5.37 -72.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394662993.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.183 kcal (2) G-P(sol) polarization free energy of solvation -67.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds