Wall clock time and date at job start Mon Mar 30 2020 05:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47600 * 179.97438 * 10 9 7 12 12 N 1.46896 * 109.47208 * 179.97438 * 11 10 9 13 13 C 1.46907 * 110.99733 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.46848 * 180.02562 * 13 12 11 15 15 H 1.08995 * 109.48285 * 295.01893 * 14 13 12 16 16 C 1.53514 * 109.48052 * 174.99983 * 14 13 12 17 17 N 1.43338 * 111.29083 * 235.39673 * 16 14 13 18 18 C 1.47401 * 113.75956 * 57.48575 * 17 16 14 19 19 C 1.52846 * 109.86972 * 312.56423 * 18 17 16 20 20 N 1.44565 * 109.48245 * 55.05946 * 14 13 12 21 21 C 1.43884 * 117.17472 * 198.35918 * 20 14 13 22 22 C 1.52297 * 112.85192 * 263.15306 * 21 20 14 23 23 C 1.44129 * 119.24324 * 285.87076 * 17 16 14 24 24 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 26 26 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 27 27 H 1.09003 * 109.46788 * 300.00488 * 10 9 7 28 28 H 1.08999 * 109.46950 * 59.99414 * 10 9 7 29 29 H 1.09002 * 109.47128 * 300.00412 * 11 10 9 30 30 H 1.09006 * 109.46661 * 59.99854 * 11 10 9 31 31 H 1.00896 * 110.99809 * 56.05270 * 12 11 10 32 32 H 1.08992 * 109.47248 * 300.00172 * 13 12 11 33 33 H 1.09001 * 109.47119 * 60.00189 * 13 12 11 34 34 H 1.09001 * 109.11351 * 355.86643 * 16 14 13 35 35 H 1.08999 * 109.11454 * 114.98751 * 16 14 13 36 36 H 1.09001 * 109.40735 * 72.68771 * 18 17 16 37 37 H 1.09000 * 109.40210 * 192.44368 * 18 17 16 38 38 H 1.09001 * 109.46004 * 107.46053 * 19 18 17 39 39 H 1.08998 * 109.46005 * 227.42376 * 19 18 17 40 40 H 1.09006 * 108.80572 * 24.01887 * 21 20 14 41 41 H 1.08992 * 108.80673 * 142.28193 * 21 20 14 42 42 H 1.09007 * 110.01610 * 181.01306 * 22 21 20 43 43 H 1.09002 * 110.01882 * 302.35515 * 22 21 20 44 44 H 1.08996 * 109.34691 * 218.13589 * 23 17 16 45 45 H 1.09000 * 109.34687 * 337.68445 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4800 -4.9871 0.0001 12 7 2.4346 -6.1037 -0.0005 13 6 1.7342 -7.3950 -0.0005 14 6 2.7590 -8.5310 -0.0005 15 1 3.3252 -8.5098 -0.9317 16 6 2.0315 -9.8769 0.1256 17 7 2.5220 -10.6312 1.2414 18 6 2.4103 -9.9253 2.5306 19 6 2.9385 -8.4980 2.3888 20 7 3.6616 -8.3662 1.1167 21 6 4.9121 -9.0757 1.0615 22 6 4.8789 -10.3931 1.8248 23 6 3.8137 -11.2641 1.1503 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5570 0.8898 26 1 0.6239 -2.5567 -0.8903 27 1 2.8717 -3.6044 -0.8905 28 1 2.8717 -3.6044 0.8894 29 1 0.8536 -5.0446 0.8903 30 1 0.8530 -5.0450 -0.8897 31 1 3.0699 -6.0366 0.7804 32 1 1.1096 -7.4696 0.8896 33 1 1.1089 -7.4692 -0.8903 34 1 0.9650 -9.6951 0.2587 35 1 2.1840 -10.4520 -0.7877 36 1 1.3649 -9.8957 2.8379 37 1 2.9934 -10.4540 3.2846 38 1 2.1030 -7.7982 2.4059 39 1 3.6140 -8.2771 3.2152 40 1 5.1545 -9.2799 0.0185 41 1 5.6933 -8.4441 1.4843 42 1 5.8515 -10.8819 1.7679 43 1 4.6120 -10.2142 2.8664 44 1 3.7757 -12.2351 1.6439 45 1 4.0737 -11.4047 0.1011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394686827.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:49 Heat of formation + Delta-G solvation = 17.634613 kcal Electronic energy + Delta-G solvation = -21093.563967 eV Core-core repulsion = 18145.750828 eV Total energy + Delta-G solvation = -2947.813140 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.45614 -36.58789 -34.56740 -33.94068 -32.89535 -31.59553 -30.67475 -27.52601 -26.04884 -25.55418 -24.10201 -22.66742 -21.83266 -20.75092 -20.07012 -18.80595 -17.68268 -16.48159 -16.14266 -16.08381 -15.30121 -14.51907 -14.47991 -14.26626 -13.90794 -13.77447 -13.67561 -13.14119 -12.89683 -12.70061 -12.36417 -12.26977 -11.94744 -11.88033 -11.57477 -11.40230 -11.23679 -11.08616 -10.84120 -10.75553 -10.62915 -10.50022 -10.40230 -9.61441 -9.27360 -8.99872 -8.85764 -8.29441 -7.99680 -7.75685 -5.94781 -3.96443 3.35539 3.41352 3.41866 3.45630 3.90632 4.32930 4.37510 4.51191 4.57286 4.62697 4.85145 4.95618 5.02667 5.08857 5.16251 5.28238 5.34460 5.38359 5.40966 5.45855 5.54101 5.58704 5.61454 5.72405 5.74906 5.76104 5.86715 5.89769 5.94362 6.08587 6.42321 6.70848 6.81858 6.87219 7.02546 7.19074 7.22554 7.31800 7.51892 7.74783 7.86822 7.93160 8.06484 8.50276 9.10972 9.67197 11.16764 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.042970 B = 0.003061 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.463896 B = 9144.077376 C = 9386.279110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.274 1.274 6 H -0.287 1.287 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.105 4.105 11 C 0.059 3.941 12 N -0.684 5.684 13 C 0.071 3.929 14 C 0.073 3.927 15 H 0.086 0.914 16 C 0.054 3.946 17 N -0.574 5.574 18 C 0.033 3.967 19 C 0.037 3.963 20 N -0.564 5.564 21 C 0.085 3.915 22 C -0.189 4.189 23 C 0.077 3.923 24 H 0.259 0.741 25 H 0.013 0.987 26 H 0.015 0.985 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.019 0.981 30 H 0.063 0.937 31 H 0.348 0.652 32 H 0.024 0.976 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.780 -24.447 3.751 25.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.198 1.198 6 H -0.213 1.213 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.143 4.143 11 C -0.070 4.070 12 N -0.316 5.316 13 C -0.060 4.060 14 C -0.038 4.038 15 H 0.104 0.896 16 C -0.077 4.077 17 N -0.296 5.296 18 C -0.096 4.096 19 C -0.092 4.092 20 N -0.286 5.286 21 C -0.043 4.043 22 C -0.229 4.229 23 C -0.051 4.051 24 H 0.069 0.931 25 H 0.031 0.969 26 H 0.034 0.966 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.038 0.962 30 H 0.082 0.918 31 H 0.167 0.833 32 H 0.042 0.958 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.591 -24.248 2.985 25.305 hybrid contribution 0.367 0.759 0.919 1.247 sum 6.959 -23.489 3.904 24.807 Atomic orbital electron populations 1.69973 1.06059 1.26483 1.51195 1.25035 0.94848 0.99243 0.95460 0.86597 0.79889 0.83502 0.78041 1.20731 1.19846 1.21266 1.21277 0.93070 0.91099 1.50109 0.92686 1.19064 0.94040 0.91430 0.97022 1.21594 0.99088 0.93026 1.00621 1.22107 0.94214 0.91182 0.99467 1.60441 1.19748 1.00568 1.50861 1.22005 0.94434 0.89553 0.99977 1.21997 0.93864 0.94293 0.93621 0.89607 1.22012 0.99839 0.93300 0.92545 1.57334 1.29139 1.39803 1.03284 1.22699 1.01792 0.94177 0.90912 1.22488 0.98553 0.96618 0.91548 1.57316 1.06128 1.62584 1.02587 1.21166 0.90634 0.92242 1.00294 1.23027 1.00447 0.98148 1.01309 1.21565 0.86006 0.96930 1.00576 0.93091 0.96901 0.96629 0.92664 0.93781 0.96230 0.91842 0.83291 0.95778 0.90959 0.90394 0.90921 0.91081 0.90619 0.90335 0.90675 0.91754 0.91345 0.90667 0.90541 0.91393 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.58 13.29 55.43 0.74 -26.84 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 5 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 8 H 0.05 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 10 C -0.11 -2.28 5.41 -26.73 -0.14 -2.43 16 11 C 0.06 1.07 5.68 -3.83 -0.02 1.05 16 12 N -0.68 -10.55 6.49 -113.78 -0.74 -11.29 16 13 C 0.07 0.88 4.55 -3.82 -0.02 0.87 16 14 C 0.07 0.78 2.67 -68.70 -0.18 0.59 16 15 H 0.09 0.98 7.82 -51.93 -0.41 0.58 16 16 C 0.05 0.50 5.71 -5.45 -0.03 0.47 16 17 N -0.57 -5.27 4.36 -239.01 -1.04 -6.31 16 18 C 0.03 0.29 5.71 -3.63 -0.02 0.27 16 19 C 0.04 0.35 5.32 -3.89 -0.02 0.33 16 20 N -0.56 -5.86 3.20 -231.14 -0.74 -6.60 16 21 C 0.08 0.77 5.74 -5.79 -0.03 0.73 16 22 C -0.19 -1.39 5.75 -26.97 -0.16 -1.55 16 23 C 0.08 0.61 5.80 -5.18 -0.03 0.58 16 24 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.35 5.41 7.88 -39.29 -0.31 5.10 16 32 H 0.02 0.31 6.54 -51.93 -0.34 -0.03 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 0.75 7.58 -51.93 -0.39 0.35 16 35 H 0.07 0.64 8.02 -51.93 -0.42 0.22 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.59 6.21 -51.93 -0.32 0.27 16 38 H 0.08 0.85 6.18 -51.93 -0.32 0.53 16 39 H 0.07 0.69 7.90 -51.93 -0.41 0.28 16 40 H 0.06 0.60 7.65 -51.93 -0.40 0.20 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.58 5.30 -51.93 -0.28 0.31 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.50 7.85 -51.93 -0.41 0.09 16 LS Contribution 334.64 15.07 5.04 5.04 Total: -1.00 -30.41 334.64 -11.16 -41.57 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -8.19 Total: -0.13 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -1.21 Total: -12.55 kcal Atomic # 7 Polarization: -49.26 SS G_CDS: -1.78 Total: -51.05 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.41 -11.16 -41.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394686827.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.207 kcal (2) G-P(sol) polarization free energy of solvation -30.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds