Wall clock time and date at job start Mon Mar 30 2020 05:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47460 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47600 * 179.97438 * 10 9 7 12 12 N 1.46896 * 109.47208 * 179.97438 * 11 10 9 13 13 C 1.46907 * 110.99733 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.46848 * 180.02562 * 13 12 11 15 15 H 1.08995 * 109.48285 * 295.01893 * 14 13 12 16 16 C 1.53514 * 109.48052 * 174.99983 * 14 13 12 17 17 N 1.43338 * 111.29083 * 235.39673 * 16 14 13 18 18 C 1.47401 * 113.75956 * 57.48575 * 17 16 14 19 19 C 1.52846 * 109.86972 * 312.56423 * 18 17 16 20 20 N 1.44565 * 109.48245 * 55.05946 * 14 13 12 21 21 C 1.43884 * 117.17472 * 198.35918 * 20 14 13 22 22 C 1.52297 * 112.85192 * 263.15306 * 21 20 14 23 23 C 1.44129 * 119.24324 * 285.87076 * 17 16 14 24 24 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 26 26 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 27 27 H 1.09003 * 109.46788 * 300.00488 * 10 9 7 28 28 H 1.08999 * 109.46950 * 59.99414 * 10 9 7 29 29 H 1.09002 * 109.47128 * 300.00412 * 11 10 9 30 30 H 1.09006 * 109.46661 * 59.99854 * 11 10 9 31 31 H 1.00896 * 110.99809 * 56.05270 * 12 11 10 32 32 H 1.08992 * 109.47248 * 300.00172 * 13 12 11 33 33 H 1.09001 * 109.47119 * 60.00189 * 13 12 11 34 34 H 1.09001 * 109.11351 * 355.86643 * 16 14 13 35 35 H 1.08999 * 109.11454 * 114.98751 * 16 14 13 36 36 H 1.09001 * 109.40735 * 72.68771 * 18 17 16 37 37 H 1.09000 * 109.40210 * 192.44368 * 18 17 16 38 38 H 1.09001 * 109.46004 * 107.46053 * 19 18 17 39 39 H 1.08998 * 109.46005 * 227.42376 * 19 18 17 40 40 H 1.09006 * 108.80572 * 24.01887 * 21 20 14 41 41 H 1.08992 * 108.80673 * 142.28193 * 21 20 14 42 42 H 1.09007 * 110.01610 * 181.01306 * 22 21 20 43 43 H 1.09002 * 110.01882 * 302.35515 * 22 21 20 44 44 H 1.08996 * 109.34691 * 218.13589 * 23 17 16 45 45 H 1.09000 * 109.34687 * 337.68445 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 6 1.4800 -4.9871 0.0001 12 7 2.4346 -6.1037 -0.0005 13 6 1.7342 -7.3950 -0.0005 14 6 2.7590 -8.5310 -0.0005 15 1 3.3252 -8.5098 -0.9317 16 6 2.0315 -9.8769 0.1256 17 7 2.5220 -10.6312 1.2414 18 6 2.4103 -9.9253 2.5306 19 6 2.9385 -8.4980 2.3888 20 7 3.6616 -8.3662 1.1167 21 6 4.9121 -9.0757 1.0615 22 6 4.8789 -10.3931 1.8248 23 6 3.8137 -11.2641 1.1503 24 1 -0.4850 0.8401 0.0004 25 1 0.6246 -2.5570 0.8898 26 1 0.6239 -2.5567 -0.8903 27 1 2.8717 -3.6044 -0.8905 28 1 2.8717 -3.6044 0.8894 29 1 0.8536 -5.0446 0.8903 30 1 0.8530 -5.0450 -0.8897 31 1 3.0699 -6.0366 0.7804 32 1 1.1096 -7.4696 0.8896 33 1 1.1089 -7.4692 -0.8903 34 1 0.9650 -9.6951 0.2587 35 1 2.1840 -10.4520 -0.7877 36 1 1.3649 -9.8957 2.8379 37 1 2.9934 -10.4540 3.2846 38 1 2.1030 -7.7982 2.4059 39 1 3.6140 -8.2771 3.2152 40 1 5.1545 -9.2799 0.0185 41 1 5.6933 -8.4441 1.4843 42 1 5.8515 -10.8819 1.7679 43 1 4.6120 -10.2142 2.8664 44 1 3.7757 -12.2351 1.6439 45 1 4.0737 -11.4047 0.1011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394686827.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:49 Heat of formation + Delta-G solvation = -3.419397 kcal Electronic energy + Delta-G solvation = -21094.476938 eV Core-core repulsion = 18145.750828 eV Total energy + Delta-G solvation = -2948.726110 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.20180 -37.86656 -35.91629 -35.00749 -34.35506 -32.75463 -32.00182 -28.91435 -27.16549 -26.61176 -25.11937 -24.06735 -23.06017 -21.89338 -21.42730 -19.61425 -18.49399 -18.39974 -17.29254 -16.94031 -16.55834 -16.37406 -15.49473 -15.34925 -15.07696 -14.91057 -14.48057 -14.32085 -14.08551 -13.77326 -13.62216 -13.33517 -13.25979 -13.00261 -12.82271 -12.61391 -12.56018 -12.45296 -12.23665 -12.16589 -11.79908 -11.61377 -11.47680 -11.42461 -11.35320 -11.05753 -10.55359 -9.58854 -9.24479 -8.53310 -8.20071 -6.31257 1.39855 1.41696 1.53145 2.41296 2.68890 3.12761 3.16774 3.27849 3.68179 3.81528 3.94504 4.02894 4.11231 4.20924 4.27904 4.37016 4.42188 4.42388 4.49951 4.59175 4.70280 4.72181 4.74650 4.79468 4.84216 4.91258 4.95148 5.00523 5.01606 5.07420 5.11085 5.13376 5.15670 5.25474 5.52092 5.75366 5.85817 5.98505 6.14915 6.27504 6.32695 6.46506 6.57616 6.61665 6.85526 7.37887 8.91957 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.042970 B = 0.003061 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.463896 B = 9144.077376 C = 9386.279110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.264 1.264 6 H -0.281 1.281 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.026 3.974 10 C -0.090 4.090 11 C 0.073 3.927 12 N -0.683 5.683 13 C 0.073 3.927 14 C 0.082 3.918 15 H 0.078 0.922 16 C 0.060 3.940 17 N -0.580 5.580 18 C 0.037 3.963 19 C 0.040 3.960 20 N -0.577 5.577 21 C 0.084 3.916 22 C -0.179 4.179 23 C 0.076 3.924 24 H 0.264 0.736 25 H -0.010 1.010 26 H -0.009 1.009 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.017 0.983 30 H 0.060 0.940 31 H 0.348 0.652 32 H 0.025 0.975 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.128 -25.240 4.093 26.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.188 1.188 6 H -0.206 1.206 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.128 4.128 11 C -0.056 4.056 12 N -0.315 5.315 13 C -0.057 4.057 14 C -0.029 4.029 15 H 0.097 0.903 16 C -0.071 4.071 17 N -0.302 5.302 18 C -0.092 4.092 19 C -0.089 4.089 20 N -0.300 5.300 21 C -0.043 4.043 22 C -0.219 4.219 23 C -0.051 4.051 24 H 0.073 0.927 25 H 0.008 0.992 26 H 0.010 0.990 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.035 0.965 30 H 0.078 0.922 31 H 0.168 0.832 32 H 0.043 0.957 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.953 -25.069 3.332 26.511 hybrid contribution -0.070 0.977 0.814 1.273 sum 7.883 -24.092 4.145 25.686 Atomic orbital electron populations 1.70103 1.07819 1.27792 1.51740 1.26011 0.95816 1.03443 0.94684 0.85420 0.78646 0.78272 0.78556 1.19652 1.18779 1.20594 1.21703 0.93520 0.92453 1.50504 0.92332 1.18963 0.94388 0.93114 0.94681 1.21344 0.97940 0.93084 1.00435 1.21813 0.94037 0.90582 0.99214 1.60388 1.19289 1.00959 1.50911 1.22060 0.94953 0.88626 1.00077 1.21846 0.93424 0.94129 0.93494 0.90345 1.21931 0.99473 0.92593 0.93136 1.57385 1.29960 1.39620 1.03227 1.22670 1.01815 0.93585 0.91082 1.22443 0.98101 0.96940 0.91402 1.57283 1.06565 1.63444 1.02697 1.21176 0.89750 0.92988 1.00433 1.22931 1.01091 0.97029 1.00838 1.21618 0.85519 0.97181 1.00829 0.92738 0.99173 0.99024 0.93090 0.93507 0.96482 0.92189 0.83248 0.95682 0.90776 0.90680 0.90127 0.91340 0.89410 0.91850 0.90171 0.92024 0.91740 0.89175 0.90484 0.90585 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.15 13.29 21.45 0.28 -57.87 16 2 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 3 Si 0.97 45.26 29.54 68.60 2.03 47.28 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 7 C -0.54 -32.13 9.11 25.60 0.23 -31.90 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.44 4.97 29.85 0.15 1.59 16 10 C -0.09 -3.94 5.41 30.59 0.17 -3.78 16 11 C 0.07 2.65 5.68 86.30 0.49 3.14 16 12 N -0.68 -20.74 6.49 -513.89 -3.34 -24.08 16 13 C 0.07 1.77 4.55 86.30 0.39 2.16 16 14 C 0.08 1.66 2.67 45.53 0.12 1.78 16 15 H 0.08 1.72 7.82 -2.39 -0.02 1.70 16 16 C 0.06 1.03 5.71 87.14 0.50 1.53 16 17 N -0.58 -9.59 4.36 -910.09 -3.97 -13.56 16 18 C 0.04 0.59 5.71 86.16 0.49 1.08 16 19 C 0.04 0.72 5.32 86.25 0.46 1.18 16 20 N -0.58 -11.35 3.20 -885.20 -2.83 -14.18 16 21 C 0.08 1.40 5.74 86.63 0.50 1.90 16 22 C -0.18 -2.23 5.75 30.44 0.18 -2.06 16 23 C 0.08 1.04 5.80 86.90 0.50 1.54 16 24 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 25 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 26 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 27 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 2.22 8.14 -2.38 -0.02 2.21 16 31 H 0.35 10.61 7.88 -89.70 -0.71 9.90 16 32 H 0.03 0.62 6.54 -2.39 -0.02 0.60 16 33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.07 1.35 7.58 -2.39 -0.02 1.33 16 35 H 0.08 1.28 8.02 -2.39 -0.02 1.26 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.09 1.18 6.21 -2.39 -0.01 1.16 16 38 H 0.06 1.34 6.18 -2.39 -0.01 1.32 16 39 H 0.08 1.36 7.90 -2.39 -0.02 1.34 16 40 H 0.06 1.05 7.65 -2.38 -0.02 1.04 16 41 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 43 H 0.08 0.98 5.30 -2.39 -0.01 0.97 16 44 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.06 0.87 7.85 -2.39 -0.02 0.85 16 Total: -1.00 -64.59 334.64 -2.94 -67.53 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.24 Total: 16.35 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 4.64 Total: -21.48 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -9.85 Total: -109.68 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -64.59 -2.94 -67.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394686827.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.111 kcal (2) G-P(sol) polarization free energy of solvation -64.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds