Wall clock time and date at job start Mon Mar 30 2020 05:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99966 * 2 1 4 4 H 1.48503 * 109.46700 * 269.99728 * 3 2 1 5 5 H 1.48499 * 109.47396 * 29.99672 * 3 2 1 6 6 H 1.48497 * 109.47533 * 149.99978 * 3 2 1 7 7 C 1.37873 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99787 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99907 * 180.02562 * 7 2 1 10 10 C 1.53001 * 109.47072 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47364 * 180.02562 * 10 9 7 12 12 N 1.46898 * 109.47251 * 180.02562 * 11 10 9 13 13 C 1.46903 * 111.00069 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47013 * 180.02562 * 13 12 11 15 15 H 1.09004 * 109.33915 * 64.79621 * 14 13 12 16 16 C 1.52548 * 109.42027 * 184.58065 * 14 13 12 17 17 N 1.46926 * 109.54835 * 132.64018 * 16 14 13 18 18 C 1.44480 * 110.66541 * 294.62278 * 17 16 14 19 19 C 1.53520 * 109.32080 * 55.49557 * 18 17 16 20 20 N 1.43337 * 111.29027 * 4.62812 * 19 18 17 21 21 C 1.44129 * 119.24646 * 74.11660 * 20 19 18 22 22 C 1.53243 * 110.21947 * 262.09243 * 21 20 19 23 23 C 1.43877 * 114.62511 * 69.93087 * 17 16 14 24 24 H 0.96996 * 119.99677 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47408 * 60.00668 * 9 7 2 26 26 H 1.08998 * 109.47487 * 300.00198 * 9 7 2 27 27 H 1.08999 * 109.47252 * 60.00036 * 10 9 7 28 28 H 1.09008 * 109.47147 * 300.00276 * 10 9 7 29 29 H 1.08999 * 109.47088 * 59.99713 * 11 10 9 30 30 H 1.08997 * 109.46854 * 299.99654 * 11 10 9 31 31 H 1.00904 * 111.00419 * 56.04031 * 12 11 10 32 32 H 1.09002 * 109.46767 * 59.99833 * 13 12 11 33 33 H 1.09001 * 109.46678 * 299.99790 * 13 12 11 34 34 H 1.09001 * 109.34251 * 12.68067 * 16 14 13 35 35 H 1.08997 * 109.55116 * 252.72960 * 16 14 13 36 36 H 1.08996 * 109.52818 * 295.54921 * 18 17 16 37 37 H 1.08993 * 109.52549 * 175.44849 * 18 17 16 38 38 H 1.09003 * 109.11122 * 244.16179 * 19 18 17 39 39 H 1.08999 * 109.06157 * 125.06376 * 19 18 17 40 40 H 1.09005 * 109.34979 * 141.86256 * 21 20 19 41 41 H 1.09006 * 109.34749 * 22.31763 * 21 20 19 42 42 H 1.08998 * 110.01894 * 302.33361 * 22 21 20 43 43 H 1.09001 * 110.10320 * 180.93110 * 22 21 20 44 44 H 1.09002 * 108.80625 * 203.89415 * 23 17 16 45 45 H 1.09002 * 108.80210 * 85.52415 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5516 -2.6365 0.0022 12 7 6.0413 -4.0215 0.0015 13 6 7.5098 -4.0607 0.0020 14 6 7.9810 -5.5163 0.0006 15 1 7.6759 -5.9936 -0.9307 16 6 9.5016 -5.5572 0.1161 17 7 9.8906 -6.5339 1.1425 18 6 9.4416 -6.1077 2.4480 19 6 7.9261 -5.8658 2.4099 20 7 7.3728 -6.2291 1.1385 21 6 7.2243 -7.6241 0.8079 22 6 8.4001 -8.0916 -0.0565 23 6 9.6579 -7.9072 0.7821 24 1 -0.4849 0.8400 -0.0004 25 1 3.8746 -0.6800 0.8912 26 1 3.8753 -0.6803 -0.8888 27 1 3.6586 -3.1501 -0.8892 28 1 3.6578 -3.1506 0.8908 29 1 5.9142 -2.1230 0.8927 30 1 5.9156 -2.1224 -0.8873 31 1 5.6663 -4.5372 -0.7806 32 1 7.8863 -3.5573 0.8925 33 1 7.8869 -3.5562 -0.8875 34 1 9.8691 -4.5700 0.3962 35 1 9.9325 -5.8465 -0.8424 36 1 9.9501 -5.1842 2.7246 37 1 9.6679 -6.8814 3.1815 38 1 7.7283 -4.8103 2.5968 39 1 7.4508 -6.4614 3.1894 40 1 6.2933 -7.7681 0.2595 41 1 7.1948 -8.2116 1.7256 42 1 8.4625 -7.4860 -0.9607 43 1 8.2775 -9.1423 -0.3192 44 1 9.5626 -8.4982 1.6930 45 1 10.5147 -8.2717 0.2154 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394686829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:52 Heat of formation + Delta-G solvation = -1.297522 kcal Electronic energy + Delta-G solvation = -21141.438892 eV Core-core repulsion = 18192.804793 eV Total energy + Delta-G solvation = -2948.634099 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.13505 -37.77409 -35.72651 -35.01966 -34.15977 -33.57114 -32.04206 -28.83809 -26.97823 -26.57882 -25.35232 -23.68154 -23.21451 -21.84308 -21.21756 -19.74118 -18.88815 -17.92593 -17.39981 -17.01219 -16.40591 -16.28763 -15.56010 -15.34518 -15.04636 -14.74743 -14.64007 -14.42033 -14.16517 -14.01478 -13.70106 -13.36217 -13.09526 -12.96014 -12.89276 -12.64156 -12.55922 -12.41423 -12.19719 -11.84951 -11.80067 -11.56733 -11.47152 -11.39072 -11.34809 -11.17151 -10.76104 -9.48116 -9.14248 -8.42435 -8.29227 -6.33602 1.35642 1.38312 1.50766 2.36876 2.73811 3.05864 3.20774 3.32330 3.70096 3.79773 3.96348 4.05320 4.12992 4.25450 4.31545 4.41094 4.42498 4.48040 4.51999 4.62477 4.69314 4.69894 4.72319 4.80639 4.83067 4.92896 4.93933 5.00886 5.04096 5.05321 5.08506 5.13725 5.16196 5.17086 5.53565 5.62864 5.67402 6.01578 6.23964 6.31628 6.38263 6.47397 6.61141 6.73701 6.74893 7.30977 8.88003 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.040880 B = 0.003240 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.772003 B = 8640.880467 C = 8848.589057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.246 1.246 7 C -0.534 4.534 8 H 0.028 0.972 9 C -0.009 4.009 10 C -0.088 4.088 11 C 0.073 3.927 12 N -0.676 5.676 13 C 0.072 3.928 14 C 0.075 3.925 15 H 0.083 0.917 16 C 0.052 3.948 17 N -0.580 5.580 18 C 0.043 3.957 19 C 0.058 3.942 20 N -0.567 5.567 21 C 0.080 3.920 22 C -0.181 4.181 23 C 0.082 3.918 24 H 0.266 0.734 25 H 0.019 0.981 26 H 0.019 0.981 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.063 0.937 30 H 0.028 0.972 31 H 0.338 0.662 32 H 0.061 0.939 33 H 0.037 0.963 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.064 0.936 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.143 -15.270 0.899 29.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.169 1.169 7 C -0.572 4.572 8 H 0.046 0.954 9 C -0.047 4.047 10 C -0.126 4.126 11 C -0.057 4.057 12 N -0.307 5.307 13 C -0.058 4.058 14 C -0.035 4.035 15 H 0.101 0.899 16 C -0.078 4.078 17 N -0.302 5.302 18 C -0.087 4.087 19 C -0.072 4.072 20 N -0.289 5.289 21 C -0.047 4.047 22 C -0.221 4.221 23 C -0.046 4.046 24 H 0.075 0.925 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.046 0.954 31 H 0.156 0.844 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.106 0.894 44 H 0.083 0.917 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 24.981 -15.137 1.711 29.259 hybrid contribution -0.478 0.654 -0.886 1.200 sum 24.503 -14.483 0.825 28.475 Atomic orbital electron populations 1.70085 1.08401 1.28203 1.52797 1.26096 0.95686 1.03767 0.94061 0.85577 0.79447 0.77838 0.79278 1.18977 1.20902 1.16941 1.21532 0.92350 0.93024 1.50314 0.95391 1.19485 0.93709 0.95135 0.96386 1.21228 0.94275 0.96652 1.00411 1.21843 0.94354 0.89694 0.99764 1.60297 1.07880 1.12410 1.50098 1.22059 0.87716 0.96000 1.00017 1.22183 0.93730 0.93667 0.93907 0.89871 1.22358 0.93499 0.96128 0.95783 1.57557 1.66546 1.02918 1.03136 1.22399 0.94895 1.01668 0.89750 1.21838 0.94186 1.01458 0.89749 1.56819 1.60027 1.10092 1.01938 1.21525 0.97684 0.86476 0.99046 1.22967 0.96273 1.03165 0.99724 1.21239 0.96744 0.87172 0.99418 0.92483 0.96303 0.96300 0.93702 0.93735 0.91884 0.95419 0.84431 0.92007 0.94464 0.90442 0.89790 0.90437 0.90587 0.91798 0.91483 0.92136 0.92051 0.90822 0.89364 0.91702 0.91044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.52 13.96 21.45 0.30 -61.23 16 2 C 0.00 0.01 5.47 84.65 0.46 0.47 16 3 Si 0.96 45.22 27.47 68.60 1.88 47.11 16 4 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 7 C -0.53 -32.10 9.66 25.60 0.25 -31.85 16 8 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 9 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 10 C -0.09 -3.58 5.41 30.60 0.17 -3.42 16 11 C 0.07 2.32 5.69 86.30 0.49 2.81 16 12 N -0.68 -18.50 6.23 -513.88 -3.20 -21.69 16 13 C 0.07 1.55 4.76 86.30 0.41 1.96 16 14 C 0.07 1.36 1.98 44.67 0.09 1.45 16 15 H 0.08 1.49 6.21 -2.38 -0.01 1.48 16 16 C 0.05 0.81 5.13 86.15 0.44 1.25 16 17 N -0.58 -9.28 4.36 -911.70 -3.97 -13.25 16 18 C 0.04 0.69 6.10 86.93 0.53 1.22 16 19 C 0.06 1.12 5.83 87.14 0.51 1.62 16 20 N -0.57 -11.50 3.77 -885.35 -3.34 -14.84 16 21 C 0.08 1.41 5.80 86.90 0.50 1.92 16 22 C -0.18 -2.44 5.76 30.44 0.18 -2.26 16 23 C 0.08 1.13 5.75 86.63 0.50 1.63 16 24 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 25 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 26 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 27 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 29 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.34 8.99 8.73 -89.69 -0.78 8.21 16 32 H 0.06 1.41 7.18 -2.39 -0.02 1.39 16 33 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.08 1.23 7.55 -2.39 -0.02 1.21 16 35 H 0.08 1.16 7.90 -2.39 -0.02 1.14 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.08 1.09 7.82 -2.39 -0.02 1.07 16 38 H 0.06 1.42 7.13 -2.39 -0.02 1.40 16 39 H 0.07 1.29 8.02 -2.39 -0.02 1.27 16 40 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 41 H 0.06 1.06 7.85 -2.38 -0.02 1.04 16 42 H 0.07 1.04 5.29 -2.39 -0.01 1.03 16 43 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.06 0.88 7.64 -2.39 -0.02 0.86 16 45 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -67.27 333.60 -3.58 -70.85 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.10 Total: 16.58 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 4.64 Total: -23.52 kcal Atomic # 7 Polarization: -100.80 SS G_CDS: -10.22 Total: -111.01 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.88 Total: 47.11 kcal Total: -67.27 -3.58 -70.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394686829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.553 kcal (2) G-P(sol) polarization free energy of solvation -67.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds