Wall clock time and date at job start Mon Mar 30 2020 05:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47207 * 2 1 4 4 H 1.08996 * 109.46974 * 304.75332 * 3 2 1 5 5 C 1.50696 * 109.47237 * 184.74930 * 3 2 1 6 6 H 1.07999 * 120.00016 * 240.00353 * 5 3 2 7 7 C 1.37881 * 119.99708 * 59.99553 * 5 3 2 8 8 N 1.31511 * 120.00016 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99883 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47183 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.47520 * 300.00673 * 9 7 5 12 12 H 1.48504 * 109.46885 * 60.00691 * 9 7 5 13 13 N 1.46898 * 109.47290 * 64.75047 * 3 2 1 14 14 C 1.46897 * 111.00051 * 204.71272 * 13 3 2 15 15 C 1.53004 * 109.46908 * 175.62121 * 14 13 3 16 16 H 1.08992 * 109.10981 * 64.50726 * 15 14 13 17 17 C 1.53513 * 109.11228 * 183.64510 * 15 14 13 18 18 N 1.44452 * 109.47763 * 125.12545 * 17 15 14 19 19 C 1.46928 * 110.60842 * 55.44354 * 18 17 15 20 20 C 1.52843 * 109.51906 * 294.68619 * 19 18 17 21 21 N 1.43348 * 109.11531 * 305.37083 * 15 14 13 22 22 C 1.44126 * 119.24729 * 313.65785 * 21 15 14 23 23 C 1.53241 * 110.21185 * 262.08432 * 22 21 15 24 24 C 1.43883 * 117.13925 * 281.57496 * 18 17 15 25 25 H 1.09007 * 109.47068 * 304.29971 * 1 2 3 26 26 H 1.08994 * 109.46979 * 64.29880 * 1 2 3 27 27 H 1.09005 * 109.47262 * 184.29995 * 1 2 3 28 28 H 1.08997 * 109.47225 * 239.99751 * 2 1 3 29 29 H 1.09010 * 109.46798 * 119.99605 * 2 1 3 30 30 H 0.97005 * 119.99824 * 179.97438 * 8 7 5 31 31 H 1.00896 * 111.00152 * 80.75524 * 13 3 2 32 32 H 1.08991 * 109.47323 * 295.61886 * 14 13 3 33 33 H 1.09003 * 109.47075 * 55.62380 * 14 13 3 34 34 H 1.09002 * 109.48004 * 245.07659 * 17 15 14 35 35 H 1.08996 * 109.48427 * 5.11079 * 17 15 14 36 36 H 1.09000 * 109.46386 * 54.70374 * 19 18 17 37 37 H 1.09005 * 109.45974 * 174.67567 * 19 18 17 38 38 H 1.08992 * 109.41058 * 252.44272 * 20 19 18 39 39 H 1.09008 * 109.40200 * 132.68859 * 20 19 18 40 40 H 1.08994 * 109.35027 * 22.31660 * 22 21 15 41 41 H 1.09005 * 109.34441 * 142.01108 * 22 21 15 42 42 H 1.09000 * 110.01858 * 180.89232 * 23 22 21 43 43 H 1.08996 * 110.02017 * 302.23984 * 23 22 21 44 44 H 1.09002 * 108.80302 * 335.96227 * 24 18 17 45 45 H 1.08994 * 108.72044 * 217.64548 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6088 1.9803 -0.8443 5 6 3.5424 1.4441 -0.1176 6 1 4.1445 1.8898 0.6604 7 6 4.1483 0.8765 -1.2185 8 7 3.4150 0.3341 -2.1660 9 14 6.0105 0.8791 -1.3647 10 1 6.4086 0.2137 -2.6312 11 1 6.5052 2.2793 -1.3650 12 1 6.5984 0.1468 -0.2143 13 7 1.6463 2.1011 1.2526 14 6 1.5748 3.5583 1.0814 15 6 1.0580 4.1987 2.3713 16 1 1.7800 4.0265 3.1693 17 6 0.8998 5.7101 2.1538 18 7 -0.4503 6.1052 2.4819 19 6 -0.7911 5.6947 3.8509 20 6 -0.8064 4.1688 3.9376 21 7 -0.1906 3.5920 2.7289 22 6 -1.1997 3.4080 1.7165 23 6 -2.2278 4.5426 1.7813 24 6 -1.4697 5.8340 1.5034 25 1 -0.3633 0.5791 0.8490 26 1 -0.3633 0.4457 -0.9259 27 1 -0.3634 -1.0248 0.0771 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8413 -0.0649 -2.9406 31 1 2.2743 1.8556 2.0032 32 1 2.5678 3.9467 0.8555 33 1 0.8969 3.7949 0.2613 34 1 1.6001 6.2449 2.7954 35 1 1.1055 5.9508 1.1108 36 1 -0.0489 6.0905 4.5441 37 1 -1.7755 6.0832 4.1121 38 1 -1.8360 3.8210 4.0207 39 1 -0.2459 3.8504 4.8167 40 1 -0.7285 3.4033 0.7336 41 1 -1.7051 2.4560 1.8792 42 1 -2.9979 4.3919 1.0248 43 1 -2.6805 4.5797 2.7721 44 1 -1.0035 5.7632 0.5207 45 1 -2.1778 6.6626 1.4969 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394691483.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:41 Heat of formation + Delta-G solvation = 27.359371 kcal Electronic energy + Delta-G solvation = -22374.193675 eV Core-core repulsion = 19426.802232 eV Total energy + Delta-G solvation = -2947.391443 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.02903 -36.26917 -34.19403 -33.52646 -32.21795 -31.43332 -30.13935 -26.79973 -25.67975 -25.43281 -24.06704 -22.63581 -21.86251 -19.97613 -19.41076 -18.34168 -17.17289 -16.56734 -16.26178 -15.53399 -14.77538 -14.27802 -13.99940 -13.94576 -13.36644 -13.13010 -12.92159 -12.82092 -12.47493 -12.27578 -12.09592 -11.85256 -11.55350 -11.41727 -11.16948 -11.12526 -11.08270 -10.88166 -10.73290 -10.59471 -10.43157 -10.19815 -9.93655 -9.54744 -9.40424 -9.01353 -8.40016 -8.35171 -7.30360 -7.09971 -5.96470 -4.10296 3.28529 3.33883 3.36230 3.83158 4.35542 4.40799 4.75488 4.85780 4.99830 5.04375 5.22670 5.28106 5.40199 5.50737 5.55454 5.63522 5.71424 5.74546 5.81015 5.86963 5.92398 6.00916 6.04106 6.10563 6.17007 6.37626 6.42478 6.52980 6.56232 6.60528 6.78819 7.12302 7.17649 7.25344 7.41798 7.49936 7.60514 7.64182 7.80826 7.91484 8.14537 8.21999 8.40393 8.74685 9.04769 9.57440 11.02467 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.026951 B = 0.005375 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.691072 B = 5208.506157 C = 5718.648515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 C 0.216 3.784 4 H 0.027 0.973 5 C -0.545 4.545 6 H 0.051 0.949 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.887 3.113 10 H -0.287 1.287 11 H -0.279 1.279 12 H -0.277 1.277 13 N -0.671 5.671 14 C 0.074 3.926 15 C 0.085 3.915 16 H 0.074 0.926 17 C 0.042 3.958 18 N -0.573 5.573 19 C 0.042 3.958 20 C 0.033 3.967 21 N -0.544 5.544 22 C 0.085 3.915 23 C -0.191 4.191 24 C 0.082 3.918 25 H 0.054 0.946 26 H 0.032 0.968 27 H 0.022 0.978 28 H 0.087 0.913 29 H 0.029 0.971 30 H 0.261 0.739 31 H 0.327 0.673 32 H 0.031 0.969 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.439 9.061 9.087 15.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.142 4.142 3 C 0.108 3.892 4 H 0.045 0.955 5 C -0.584 4.584 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.715 3.285 10 H -0.213 1.213 11 H -0.205 1.205 12 H -0.203 1.203 13 N -0.300 5.300 14 C -0.057 4.057 15 C -0.026 4.026 16 H 0.092 0.908 17 C -0.089 4.089 18 N -0.295 5.295 19 C -0.088 4.088 20 C -0.097 4.097 21 N -0.266 5.266 22 C -0.042 4.042 23 C -0.232 4.232 24 C -0.046 4.046 25 H 0.073 0.927 26 H 0.051 0.949 27 H 0.041 0.959 28 H 0.105 0.895 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.143 0.857 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.950 8.891 8.816 15.993 hybrid contribution 1.838 0.138 -0.497 1.909 sum -8.112 9.029 8.319 14.715 Atomic orbital electron populations 1.21715 0.99076 0.98352 1.00332 1.21455 0.92067 0.99267 1.01401 1.19103 0.92433 0.91234 0.86436 0.95526 1.21869 0.92966 1.38063 1.05525 0.93039 1.24932 0.97796 0.95039 0.95732 1.69872 1.34864 1.38215 1.09443 0.86741 0.86261 0.78122 0.77337 1.21275 1.20478 1.20305 1.60786 1.55655 1.04610 1.08910 1.21932 0.98297 0.91240 0.94235 1.21565 0.90296 0.91824 0.98911 0.90783 1.22468 0.88702 0.95913 1.01836 1.57610 1.02558 1.66602 1.02747 1.22428 1.01401 0.95520 0.89420 1.22692 0.99737 0.93471 0.93753 1.56959 1.05032 1.57411 1.07170 1.21466 0.90500 0.96414 0.95868 1.23087 0.99914 0.97729 1.02459 1.21187 0.92972 0.95916 0.94498 0.92688 0.94909 0.95928 0.89480 0.95243 0.92897 0.85709 0.95089 0.92519 0.90930 0.90905 0.91050 0.91280 0.90936 0.91543 0.90532 0.91614 0.91042 0.91086 0.91761 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.85 37.16 0.37 -2.49 16 2 C -0.10 -2.49 5.45 -26.73 -0.15 -2.63 16 3 C 0.22 5.27 1.97 -68.87 -0.14 5.13 16 4 H 0.03 0.73 7.73 -51.93 -0.40 0.33 16 5 C -0.54 -14.59 8.41 -34.44 -0.29 -14.88 16 6 H 0.05 1.37 7.75 -52.49 -0.41 0.97 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.89 -25.07 11.29 55.43 0.63 -24.44 16 9 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.67 -13.68 5.18 -107.96 -0.56 -14.24 16 14 C 0.07 1.33 4.02 -3.82 -0.02 1.32 16 15 C 0.09 1.26 2.72 -69.33 -0.19 1.07 16 16 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 17 C 0.04 0.55 5.74 -4.87 -0.03 0.52 16 18 N -0.57 -7.17 4.37 -239.34 -1.05 -8.22 16 19 C 0.04 0.46 5.51 -3.89 -0.02 0.44 16 20 C 0.03 0.39 5.71 -3.63 -0.02 0.37 16 21 N -0.54 -7.82 3.91 -230.82 -0.90 -8.72 16 22 C 0.09 1.22 5.46 -5.18 -0.03 1.19 16 23 C -0.19 -2.22 5.75 -26.96 -0.16 -2.38 16 24 C 0.08 0.99 5.74 -5.79 -0.03 0.96 16 25 H 0.05 1.10 7.63 -51.93 -0.40 0.71 16 26 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 2.35 5.96 -51.93 -0.31 2.04 16 29 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.33 6.84 8.48 -39.29 -0.33 6.51 16 32 H 0.03 0.61 8.06 -51.93 -0.42 0.19 16 33 H 0.06 1.08 6.25 -51.93 -0.32 0.75 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.07 1.01 7.26 -51.93 -0.38 0.64 16 36 H 0.07 0.76 8.12 -51.93 -0.42 0.33 16 37 H 0.07 0.69 7.90 -51.93 -0.41 0.28 16 38 H 0.07 0.82 6.21 -51.93 -0.32 0.49 16 39 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 40 H 0.08 1.27 5.61 -51.93 -0.29 0.98 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.78 5.30 -51.93 -0.28 0.51 16 44 H 0.06 0.83 7.64 -51.93 -0.40 0.44 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 328.73 15.07 4.95 4.95 Total: -1.00 -27.04 328.73 -10.76 -37.80 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -8.02 Total: 6.36 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -0.79 Total: -9.63 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -1.88 Total: -55.62 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.04 -10.76 -37.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394691483.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.163 kcal (2) G-P(sol) polarization free energy of solvation -27.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds