Wall clock time and date at job start Mon Mar 30 2020 05:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47207 * 2 1 4 4 H 1.08996 * 109.46974 * 304.75332 * 3 2 1 5 5 C 1.50696 * 109.47237 * 184.74930 * 3 2 1 6 6 H 1.07999 * 120.00016 * 240.00353 * 5 3 2 7 7 C 1.37881 * 119.99708 * 59.99553 * 5 3 2 8 8 N 1.31511 * 120.00016 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99883 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47183 * 180.02562 * 9 7 5 11 11 H 1.48498 * 109.47520 * 300.00673 * 9 7 5 12 12 H 1.48504 * 109.46885 * 60.00691 * 9 7 5 13 13 N 1.46898 * 109.47290 * 64.75047 * 3 2 1 14 14 C 1.46897 * 111.00051 * 204.71272 * 13 3 2 15 15 C 1.53004 * 109.46908 * 175.62121 * 14 13 3 16 16 H 1.08992 * 109.10981 * 64.50726 * 15 14 13 17 17 C 1.53513 * 109.11228 * 183.64510 * 15 14 13 18 18 N 1.44452 * 109.47763 * 125.12545 * 17 15 14 19 19 C 1.46928 * 110.60842 * 55.44354 * 18 17 15 20 20 C 1.52843 * 109.51906 * 294.68619 * 19 18 17 21 21 N 1.43348 * 109.11531 * 305.37083 * 15 14 13 22 22 C 1.44126 * 119.24729 * 313.65785 * 21 15 14 23 23 C 1.53241 * 110.21185 * 262.08432 * 22 21 15 24 24 C 1.43883 * 117.13925 * 281.57496 * 18 17 15 25 25 H 1.09007 * 109.47068 * 304.29971 * 1 2 3 26 26 H 1.08994 * 109.46979 * 64.29880 * 1 2 3 27 27 H 1.09005 * 109.47262 * 184.29995 * 1 2 3 28 28 H 1.08997 * 109.47225 * 239.99751 * 2 1 3 29 29 H 1.09010 * 109.46798 * 119.99605 * 2 1 3 30 30 H 0.97005 * 119.99824 * 179.97438 * 8 7 5 31 31 H 1.00896 * 111.00152 * 80.75524 * 13 3 2 32 32 H 1.08991 * 109.47323 * 295.61886 * 14 13 3 33 33 H 1.09003 * 109.47075 * 55.62380 * 14 13 3 34 34 H 1.09002 * 109.48004 * 245.07659 * 17 15 14 35 35 H 1.08996 * 109.48427 * 5.11079 * 17 15 14 36 36 H 1.09000 * 109.46386 * 54.70374 * 19 18 17 37 37 H 1.09005 * 109.45974 * 174.67567 * 19 18 17 38 38 H 1.08992 * 109.41058 * 252.44272 * 20 19 18 39 39 H 1.09008 * 109.40200 * 132.68859 * 20 19 18 40 40 H 1.08994 * 109.35027 * 22.31660 * 22 21 15 41 41 H 1.09005 * 109.34441 * 142.01108 * 22 21 15 42 42 H 1.09000 * 110.01858 * 180.89232 * 23 22 21 43 43 H 1.08996 * 110.02017 * 302.23984 * 23 22 21 44 44 H 1.09002 * 108.80302 * 335.96227 * 24 18 17 45 45 H 1.08994 * 108.72044 * 217.64548 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6088 1.9803 -0.8443 5 6 3.5424 1.4441 -0.1176 6 1 4.1445 1.8898 0.6604 7 6 4.1483 0.8765 -1.2185 8 7 3.4150 0.3341 -2.1660 9 14 6.0105 0.8791 -1.3647 10 1 6.4086 0.2137 -2.6312 11 1 6.5052 2.2793 -1.3650 12 1 6.5984 0.1468 -0.2143 13 7 1.6463 2.1011 1.2526 14 6 1.5748 3.5583 1.0814 15 6 1.0580 4.1987 2.3713 16 1 1.7800 4.0265 3.1693 17 6 0.8998 5.7101 2.1538 18 7 -0.4503 6.1052 2.4819 19 6 -0.7911 5.6947 3.8509 20 6 -0.8064 4.1688 3.9376 21 7 -0.1906 3.5920 2.7289 22 6 -1.1997 3.4080 1.7165 23 6 -2.2278 4.5426 1.7813 24 6 -1.4697 5.8340 1.5034 25 1 -0.3633 0.5791 0.8490 26 1 -0.3633 0.4457 -0.9259 27 1 -0.3634 -1.0248 0.0771 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8413 -0.0649 -2.9406 31 1 2.2743 1.8556 2.0032 32 1 2.5678 3.9467 0.8555 33 1 0.8969 3.7949 0.2613 34 1 1.6001 6.2449 2.7954 35 1 1.1055 5.9508 1.1108 36 1 -0.0489 6.0905 4.5441 37 1 -1.7755 6.0832 4.1121 38 1 -1.8360 3.8210 4.0207 39 1 -0.2459 3.8504 4.8167 40 1 -0.7285 3.4033 0.7336 41 1 -1.7051 2.4560 1.8792 42 1 -2.9979 4.3919 1.0248 43 1 -2.6805 4.5797 2.7721 44 1 -1.0035 5.7632 0.5207 45 1 -2.1778 6.6626 1.4969 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394691483.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:41 Heat of formation + Delta-G solvation = 9.088081 kcal Electronic energy + Delta-G solvation = -22374.985978 eV Core-core repulsion = 19426.802232 eV Total energy + Delta-G solvation = -2948.183745 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.09361 -38.02908 -35.50668 -34.77588 -33.81528 -32.93726 -31.58656 -28.54720 -26.97540 -26.53662 -25.49230 -24.25629 -23.20381 -21.38423 -20.95855 -19.52306 -18.73943 -18.05744 -17.41025 -16.80462 -16.53962 -15.71275 -15.56937 -15.20715 -14.75750 -14.67181 -14.27978 -13.96424 -13.75496 -13.70047 -13.40898 -13.15068 -13.07351 -12.89911 -12.81237 -12.68635 -12.57481 -12.42339 -12.18964 -12.07308 -11.83750 -11.50280 -11.44587 -11.34555 -11.12641 -10.95026 -10.45632 -9.44092 -8.92684 -8.36184 -8.03186 -6.27417 1.38207 1.38866 1.46373 2.39720 2.81398 3.14294 3.28661 3.58760 3.82051 3.90651 4.01457 4.14267 4.23025 4.41657 4.45880 4.52126 4.59365 4.63995 4.67158 4.78329 4.79372 4.84836 4.87626 4.91504 4.96151 4.99502 5.04412 5.10541 5.12292 5.18224 5.23862 5.30435 5.45437 5.53069 5.65471 5.79263 6.12428 6.14204 6.23217 6.40150 6.43843 6.57033 6.73167 6.89931 7.06768 7.44641 8.91143 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.026951 B = 0.005375 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.691072 B = 5208.506157 C = 5718.648515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.099 4.099 3 C 0.226 3.774 4 H -0.009 1.009 5 C -0.560 4.560 6 H 0.049 0.951 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.949 3.051 10 H -0.284 1.284 11 H -0.275 1.275 12 H -0.272 1.272 13 N -0.657 5.657 14 C 0.082 3.918 15 C 0.098 3.902 16 H 0.074 0.926 17 C 0.048 3.952 18 N -0.576 5.576 19 C 0.045 3.955 20 C 0.035 3.965 21 N -0.561 5.561 22 C 0.090 3.910 23 C -0.179 4.179 24 C 0.082 3.918 25 H 0.061 0.939 26 H 0.025 0.975 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.025 0.975 30 H 0.261 0.739 31 H 0.326 0.674 32 H 0.013 0.987 33 H 0.043 0.957 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.070 0.930 40 H 0.046 0.954 41 H 0.056 0.944 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.047 0.953 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.070 9.964 10.769 17.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.137 4.137 3 C 0.117 3.883 4 H 0.009 0.991 5 C -0.599 4.599 6 H 0.067 0.933 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.775 3.225 10 H -0.209 1.209 11 H -0.201 1.201 12 H -0.197 1.197 13 N -0.286 5.286 14 C -0.049 4.049 15 C -0.013 4.013 16 H 0.092 0.908 17 C -0.083 4.083 18 N -0.298 5.298 19 C -0.084 4.084 20 C -0.094 4.094 21 N -0.283 5.283 22 C -0.038 4.038 23 C -0.220 4.220 24 C -0.046 4.046 25 H 0.080 0.920 26 H 0.045 0.955 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.142 0.858 32 H 0.031 0.969 33 H 0.061 0.939 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.066 0.934 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.594 9.808 10.517 17.862 hybrid contribution 2.008 -0.141 -1.023 2.258 sum -8.586 9.667 9.494 16.041 Atomic orbital electron populations 1.21542 0.96467 0.99674 1.00265 1.21310 0.94344 0.98457 0.99626 1.18849 0.91196 0.91419 0.86857 0.99068 1.22186 0.94277 1.37882 1.05552 0.93301 1.25670 1.02054 0.94796 0.95507 1.70008 1.36468 1.38802 1.09824 0.85755 0.81148 0.78176 0.77391 1.20947 1.20063 1.19711 1.60719 1.54857 1.05964 1.07017 1.21888 0.97165 0.89785 0.96064 1.21364 0.90633 0.92692 0.96596 0.90797 1.22371 0.89865 0.94575 1.01488 1.57696 1.02089 1.66451 1.03591 1.22482 1.02706 0.94716 0.88497 1.22752 1.00111 0.94118 0.92400 1.56908 1.05055 1.58243 1.08078 1.21345 0.90926 0.97251 0.94308 1.22987 0.99204 0.96123 1.03638 1.21213 0.93068 0.96653 0.93686 0.91990 0.95536 0.93956 0.92460 0.95625 0.92956 0.85789 0.96914 0.93872 0.89629 0.92116 0.90231 0.89494 0.89917 0.91153 0.93513 0.92521 0.90065 0.89576 0.93435 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.06 9.85 71.98 0.71 -4.35 16 2 C -0.10 -4.84 5.45 30.59 0.17 -4.67 16 3 C 0.23 11.36 1.97 44.17 0.09 11.44 16 4 H -0.01 -0.49 7.73 -2.39 -0.02 -0.51 16 5 C -0.56 -30.58 8.41 25.60 0.22 -30.37 16 6 H 0.05 2.64 7.75 -2.91 -0.02 2.61 16 7 C 0.02 1.09 5.29 84.66 0.45 1.54 16 8 N -0.91 -52.80 11.29 21.45 0.24 -52.56 16 9 Si 0.95 43.75 29.54 68.60 2.03 45.77 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 13 N -0.66 -27.34 5.18 -495.47 -2.57 -29.91 16 14 C 0.08 3.03 4.02 86.31 0.35 3.37 16 15 C 0.10 2.86 2.72 45.75 0.12 2.99 16 16 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 17 C 0.05 1.23 5.74 86.93 0.50 1.73 16 18 N -0.58 -13.17 4.37 -911.15 -3.98 -17.15 16 19 C 0.04 0.84 5.51 86.25 0.48 1.32 16 20 C 0.03 0.73 5.71 86.15 0.49 1.22 16 21 N -0.56 -15.44 3.91 -884.19 -3.46 -18.90 16 22 C 0.09 2.50 5.46 86.90 0.47 2.97 16 23 C -0.18 -3.79 5.75 30.44 0.18 -3.62 16 24 C 0.08 1.82 5.74 86.63 0.50 2.32 16 25 H 0.06 2.46 7.63 -2.38 -0.02 2.44 16 26 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 28 H 0.06 3.17 5.96 -2.39 -0.01 3.16 16 29 H 0.02 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.26 14.46 8.31 -92.70 -0.77 13.69 16 31 H 0.33 13.76 8.48 -89.70 -0.76 13.00 16 32 H 0.01 0.52 8.06 -2.39 -0.02 0.50 16 33 H 0.04 1.72 6.25 -2.39 -0.01 1.71 16 34 H 0.09 1.97 8.14 -2.39 -0.02 1.96 16 35 H 0.06 1.69 7.26 -2.39 -0.02 1.67 16 36 H 0.08 1.41 8.12 -2.39 -0.02 1.39 16 37 H 0.09 1.38 7.90 -2.38 -0.02 1.36 16 38 H 0.08 1.59 6.21 -2.39 -0.01 1.57 16 39 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.05 1.58 5.61 -2.39 -0.01 1.57 16 41 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 42 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.09 1.60 5.30 -2.39 -0.01 1.59 16 44 H 0.05 1.21 7.64 -2.39 -0.02 1.20 16 45 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -58.44 328.73 -2.84 -61.28 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.19 Total: 25.59 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: 4.71 Total: -14.12 kcal Atomic # 7 Polarization: -108.75 SS G_CDS: -9.77 Total: -118.52 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Total: -58.44 -2.84 -61.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394691483.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.363 kcal (2) G-P(sol) polarization free energy of solvation -58.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds