Wall clock time and date at job start Mon Mar 30 2020 05:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47513 * 2 1 4 4 H 1.08989 * 109.47272 * 179.81212 * 3 2 1 5 5 C 1.50701 * 109.46791 * 299.81725 * 3 2 1 6 6 H 1.07998 * 120.00134 * 116.03405 * 5 3 2 7 7 C 1.37881 * 119.99799 * 296.02661 * 5 3 2 8 8 N 1.31516 * 119.99957 * 353.68736 * 7 5 3 9 9 Si 1.86802 * 120.00038 * 173.68097 * 7 5 3 10 10 H 1.48498 * 109.47138 * 270.00661 * 9 7 5 11 11 H 1.48503 * 109.47090 * 149.99898 * 9 7 5 12 12 H 1.48500 * 109.46789 * 30.00508 * 9 7 5 13 13 N 1.46904 * 109.47117 * 59.80897 * 3 2 1 14 14 C 1.46906 * 110.99567 * 88.46217 * 13 3 2 15 15 C 1.52994 * 109.46932 * 185.22376 * 14 13 3 16 16 H 1.08993 * 109.10785 * 64.13988 * 15 14 13 17 17 C 1.53512 * 109.11388 * 183.21266 * 15 14 13 18 18 N 1.44563 * 109.41846 * 125.10084 * 17 15 14 19 19 C 1.46927 * 110.58796 * 55.49918 * 18 17 15 20 20 C 1.52840 * 109.52394 * 294.65858 * 19 18 17 21 21 N 1.43344 * 109.11919 * 305.00165 * 15 14 13 22 22 C 1.44126 * 119.24523 * 313.65880 * 21 15 14 23 23 C 1.53244 * 110.21252 * 262.08224 * 22 21 15 24 24 C 1.43886 * 117.17187 * 281.62287 * 18 17 15 25 25 H 1.08998 * 109.46980 * 305.06472 * 1 2 3 26 26 H 1.08997 * 109.47222 * 65.06225 * 1 2 3 27 27 H 1.08999 * 109.47080 * 185.06814 * 1 2 3 28 28 H 1.09000 * 109.47372 * 239.99870 * 2 1 3 29 29 H 1.08999 * 109.47001 * 119.99616 * 2 1 3 30 30 H 0.96994 * 120.00038 * 355.16024 * 8 7 5 31 31 H 1.00894 * 111.00132 * 212.41702 * 13 3 2 32 32 H 1.08999 * 109.47339 * 305.22729 * 14 13 3 33 33 H 1.09010 * 109.46527 * 65.22867 * 14 13 3 34 34 H 1.09004 * 109.48247 * 245.08265 * 17 15 14 35 35 H 1.09003 * 109.47967 * 5.11823 * 17 15 14 36 36 H 1.08997 * 109.46020 * 54.67973 * 19 18 17 37 37 H 1.09001 * 109.46042 * 174.64293 * 19 18 17 38 38 H 1.09002 * 109.40815 * 252.44080 * 20 19 18 39 39 H 1.08999 * 109.40697 * 132.68461 * 20 19 18 40 40 H 1.08996 * 109.35362 * 22.31227 * 22 21 15 41 41 H 1.09003 * 109.34583 * 142.00958 * 22 21 15 42 42 H 1.08995 * 110.02217 * 180.89646 * 23 22 21 43 43 H 1.09005 * 110.02196 * 302.24325 * 23 22 21 44 44 H 1.08997 * 108.80593 * 335.96839 * 24 18 17 45 45 H 1.09001 * 108.71791 * 217.64996 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1300 1.4424 0.0034 5 6 1.5415 2.1515 -1.2328 6 1 0.8686 2.9909 -1.1379 7 6 1.9445 1.7287 -2.4817 8 7 2.8582 0.7895 -2.5948 9 14 1.1927 2.4897 -4.0131 10 1 -0.0096 1.7147 -4.4118 11 1 2.1860 2.4653 -5.1167 12 1 0.8041 3.8944 -3.7280 13 7 1.5467 2.1364 1.1972 14 6 2.4698 1.9592 2.3262 15 6 1.8622 2.5826 3.5843 16 1 0.9527 2.0422 3.8467 17 6 2.8666 2.4645 4.7392 18 7 3.1103 3.7744 5.3001 19 6 1.8481 4.4023 5.7137 20 6 0.9821 4.6679 4.4826 21 7 1.5340 3.9524 3.3181 22 6 2.4984 4.7907 2.6514 23 6 3.2716 5.6268 3.6767 24 6 4.0035 4.6420 4.5791 25 1 -0.3633 0.5904 0.8411 26 1 -0.3633 0.4333 -0.9318 27 1 -0.3633 -1.0236 0.0908 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.2991 0.4439 -1.8030 31 1 1.3894 3.1150 1.0088 32 1 2.6396 0.8956 2.4933 33 1 3.4179 2.4475 2.1003 34 1 2.4595 1.8093 5.5094 35 1 3.8026 2.0490 4.3658 36 1 1.3173 3.7367 6.3944 37 1 2.0598 5.3447 6.2190 38 1 0.9654 5.7380 4.2755 39 1 -0.0336 4.3212 4.6726 40 1 3.1967 4.1657 2.0948 41 1 1.9814 5.4574 1.9613 42 1 3.9889 6.2710 3.1683 43 1 2.5797 6.2302 4.2643 44 1 4.6682 4.0321 3.9674 45 1 4.6027 5.2019 5.2971 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394691485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:49 Heat of formation + Delta-G solvation = 26.338721 kcal Electronic energy + Delta-G solvation = -22355.702973 eV Core-core repulsion = 19408.267271 eV Total energy + Delta-G solvation = -2947.435701 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.20696 -36.60369 -34.46350 -33.68956 -32.39957 -31.27223 -30.03850 -26.75940 -25.70673 -25.40640 -23.91427 -23.26510 -22.20318 -20.23613 -19.19290 -18.55421 -17.18342 -16.93280 -16.49274 -15.62159 -14.67684 -14.24526 -14.10493 -13.77971 -13.63083 -13.45578 -13.12547 -12.94866 -12.67784 -12.38922 -12.19707 -12.06748 -11.72531 -11.48851 -11.38871 -11.19253 -11.05641 -10.79453 -10.75235 -10.55191 -10.39090 -10.11287 -10.01849 -9.83237 -9.59691 -8.58217 -8.44933 -8.30645 -7.49105 -7.23743 -6.31890 -4.03143 3.45272 3.47123 3.63019 3.68717 4.19294 4.53119 4.61649 4.74363 4.84867 4.91200 5.10745 5.27323 5.36650 5.37625 5.42180 5.49782 5.57667 5.60500 5.69020 5.73921 5.80904 5.86236 5.89616 5.96257 5.98333 6.09312 6.25677 6.35230 6.38058 6.52344 6.68058 6.98011 7.03487 7.12165 7.28527 7.33481 7.39613 7.56125 7.59915 7.70436 7.96657 8.20181 8.59164 8.70183 8.91725 9.67387 11.04196 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.026952 B = 0.005265 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.640103 B = 5316.928549 C = 5697.394784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.105 4.105 3 C 0.203 3.797 4 H -0.013 1.013 5 C -0.591 4.591 6 H 0.052 0.948 7 C 0.023 3.977 8 N -0.912 5.912 9 Si 1.066 2.934 10 H -0.287 1.287 11 H -0.287 1.287 12 H -0.290 1.290 13 N -0.670 5.670 14 C 0.067 3.933 15 C 0.087 3.913 16 H 0.086 0.914 17 C 0.042 3.958 18 N -0.573 5.573 19 C 0.042 3.958 20 C 0.035 3.965 21 N -0.558 5.558 22 C 0.069 3.931 23 C -0.187 4.187 24 C 0.082 3.918 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.015 0.985 28 H 0.059 0.941 29 H 0.016 0.984 30 H 0.270 0.730 31 H 0.342 0.658 32 H 0.066 0.934 33 H 0.013 0.987 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.268 7.242 15.279 16.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.144 4.144 3 C 0.095 3.905 4 H 0.005 0.995 5 C -0.629 4.629 6 H 0.071 0.929 7 C -0.181 4.181 8 N -0.549 5.549 9 Si 0.895 3.105 10 H -0.214 1.214 11 H -0.213 1.213 12 H -0.216 1.216 13 N -0.302 5.302 14 C -0.064 4.064 15 C -0.024 4.024 16 H 0.104 0.896 17 C -0.089 4.089 18 N -0.295 5.295 19 C -0.087 4.087 20 C -0.094 4.094 21 N -0.280 5.280 22 C -0.059 4.059 23 C -0.227 4.227 24 C -0.046 4.046 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.034 0.966 28 H 0.077 0.923 29 H 0.035 0.965 30 H 0.081 0.919 31 H 0.161 0.839 32 H 0.084 0.916 33 H 0.031 0.969 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.739 6.486 13.837 15.300 hybrid contribution 1.032 0.817 1.213 1.790 sum 0.293 7.303 15.051 16.732 Atomic orbital electron populations 1.21404 0.96559 0.97441 1.02141 1.21475 0.96273 0.98398 0.98232 1.19219 0.92105 0.91544 0.87679 0.99521 1.22018 1.31394 1.17671 0.91852 0.92940 1.25673 0.95689 0.95645 1.01117 1.70751 1.23766 1.26723 1.33645 0.83590 0.75966 0.75456 0.75499 1.21397 1.21280 1.21589 1.60457 1.45607 1.18308 1.05810 1.22082 0.93420 0.99200 0.91699 1.21569 0.98590 0.87274 0.94948 0.89581 1.22503 1.00106 0.89571 0.96724 1.57623 1.16862 1.04755 1.50276 1.22429 0.89375 0.99606 0.97299 1.22670 0.98555 0.98780 0.89404 1.57133 1.40997 1.01624 1.28250 1.21645 0.93451 0.95083 0.95728 1.23009 1.00842 0.99452 0.99408 1.21197 0.94350 0.94011 0.95066 0.92801 0.92729 0.96613 0.92273 0.96514 0.91851 0.83882 0.91582 0.96872 0.90633 0.91052 0.90821 0.91099 0.90762 0.91125 0.91004 0.91147 0.90818 0.90760 0.91842 0.91839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.48 37.16 0.35 -2.30 16 2 C -0.10 -2.52 5.51 -26.73 -0.15 -2.67 16 3 C 0.20 5.03 1.94 -68.86 -0.13 4.89 16 4 H -0.01 -0.35 7.22 -51.94 -0.38 -0.72 16 5 C -0.59 -16.13 7.35 -34.44 -0.25 -16.38 16 6 H 0.05 1.46 7.61 -52.49 -0.40 1.06 16 7 C 0.02 0.65 5.24 -17.82 -0.09 0.55 16 8 N -0.91 -27.05 12.83 55.43 0.71 -26.34 16 9 Si 1.07 25.17 29.91 -169.99 -5.08 20.08 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.67 -14.09 5.39 -107.95 -0.58 -14.67 16 14 C 0.07 1.18 4.08 -3.82 -0.02 1.16 16 15 C 0.09 1.27 2.74 -69.34 -0.19 1.08 16 16 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 17 C 0.04 0.53 5.75 -4.81 -0.03 0.50 16 18 N -0.57 -6.87 4.37 -239.25 -1.05 -7.92 16 19 C 0.04 0.44 5.51 -3.89 -0.02 0.42 16 20 C 0.03 0.40 5.71 -3.63 -0.02 0.38 16 21 N -0.56 -7.86 3.60 -230.84 -0.83 -8.70 16 22 C 0.07 0.96 4.67 -5.18 -0.02 0.93 16 23 C -0.19 -2.09 5.75 -26.96 -0.16 -2.25 16 24 C 0.08 0.95 5.74 -5.79 -0.03 0.91 16 25 H 0.05 1.18 7.44 -51.93 -0.39 0.79 16 26 H 0.05 1.32 7.41 -51.93 -0.38 0.94 16 27 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 1.56 6.18 -51.93 -0.32 1.24 16 29 H 0.02 0.36 7.63 -51.93 -0.40 -0.03 16 30 H 0.27 8.02 6.06 -40.82 -0.25 7.78 16 31 H 0.34 7.44 6.65 -39.29 -0.26 7.18 16 32 H 0.07 1.19 7.59 -51.93 -0.39 0.79 16 33 H 0.01 0.25 6.43 -51.92 -0.33 -0.09 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.94 7.27 -51.93 -0.38 0.56 16 36 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 37 H 0.07 0.67 7.90 -51.93 -0.41 0.26 16 38 H 0.07 0.80 6.21 -51.93 -0.32 0.48 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 1.16 5.57 -51.93 -0.29 0.87 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.07 0.78 5.30 -51.93 -0.28 0.51 16 44 H 0.06 0.80 7.64 -51.93 -0.40 0.40 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 322.15 15.07 4.85 4.85 Total: -1.00 -28.52 322.15 -10.49 -39.01 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.75 Total: 6.44 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -0.76 Total: -12.77 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -1.75 Total: -57.62 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -5.08 Total: 20.08 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.52 -10.49 -39.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394691485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.350 kcal (2) G-P(sol) polarization free energy of solvation -28.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds