Wall clock time and date at job start Mon Mar 30 2020 05:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47513 * 2 1 4 4 H 1.08989 * 109.47272 * 179.81212 * 3 2 1 5 5 C 1.50701 * 109.46791 * 299.81725 * 3 2 1 6 6 H 1.07998 * 120.00134 * 116.03405 * 5 3 2 7 7 C 1.37881 * 119.99799 * 296.02661 * 5 3 2 8 8 N 1.31516 * 119.99957 * 353.68736 * 7 5 3 9 9 Si 1.86802 * 120.00038 * 173.68097 * 7 5 3 10 10 H 1.48498 * 109.47138 * 270.00661 * 9 7 5 11 11 H 1.48503 * 109.47090 * 149.99898 * 9 7 5 12 12 H 1.48500 * 109.46789 * 30.00508 * 9 7 5 13 13 N 1.46904 * 109.47117 * 59.80897 * 3 2 1 14 14 C 1.46906 * 110.99567 * 88.46217 * 13 3 2 15 15 C 1.52994 * 109.46932 * 185.22376 * 14 13 3 16 16 H 1.08993 * 109.10785 * 64.13988 * 15 14 13 17 17 C 1.53512 * 109.11388 * 183.21266 * 15 14 13 18 18 N 1.44563 * 109.41846 * 125.10084 * 17 15 14 19 19 C 1.46927 * 110.58796 * 55.49918 * 18 17 15 20 20 C 1.52840 * 109.52394 * 294.65858 * 19 18 17 21 21 N 1.43344 * 109.11919 * 305.00165 * 15 14 13 22 22 C 1.44126 * 119.24523 * 313.65880 * 21 15 14 23 23 C 1.53244 * 110.21252 * 262.08224 * 22 21 15 24 24 C 1.43886 * 117.17187 * 281.62287 * 18 17 15 25 25 H 1.08998 * 109.46980 * 305.06472 * 1 2 3 26 26 H 1.08997 * 109.47222 * 65.06225 * 1 2 3 27 27 H 1.08999 * 109.47080 * 185.06814 * 1 2 3 28 28 H 1.09000 * 109.47372 * 239.99870 * 2 1 3 29 29 H 1.08999 * 109.47001 * 119.99616 * 2 1 3 30 30 H 0.96994 * 120.00038 * 355.16024 * 8 7 5 31 31 H 1.00894 * 111.00132 * 212.41702 * 13 3 2 32 32 H 1.08999 * 109.47339 * 305.22729 * 14 13 3 33 33 H 1.09010 * 109.46527 * 65.22867 * 14 13 3 34 34 H 1.09004 * 109.48247 * 245.08265 * 17 15 14 35 35 H 1.09003 * 109.47967 * 5.11823 * 17 15 14 36 36 H 1.08997 * 109.46020 * 54.67973 * 19 18 17 37 37 H 1.09001 * 109.46042 * 174.64293 * 19 18 17 38 38 H 1.09002 * 109.40815 * 252.44080 * 20 19 18 39 39 H 1.08999 * 109.40697 * 132.68461 * 20 19 18 40 40 H 1.08996 * 109.35362 * 22.31227 * 22 21 15 41 41 H 1.09003 * 109.34583 * 142.00958 * 22 21 15 42 42 H 1.08995 * 110.02217 * 180.89646 * 23 22 21 43 43 H 1.09005 * 110.02196 * 302.24325 * 23 22 21 44 44 H 1.08997 * 108.80593 * 335.96839 * 24 18 17 45 45 H 1.09001 * 108.71791 * 217.64996 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1300 1.4424 0.0034 5 6 1.5415 2.1515 -1.2328 6 1 0.8686 2.9909 -1.1379 7 6 1.9445 1.7287 -2.4817 8 7 2.8582 0.7895 -2.5948 9 14 1.1927 2.4897 -4.0131 10 1 -0.0096 1.7147 -4.4118 11 1 2.1860 2.4653 -5.1167 12 1 0.8041 3.8944 -3.7280 13 7 1.5467 2.1364 1.1972 14 6 2.4698 1.9592 2.3262 15 6 1.8622 2.5826 3.5843 16 1 0.9527 2.0422 3.8467 17 6 2.8666 2.4645 4.7392 18 7 3.1103 3.7744 5.3001 19 6 1.8481 4.4023 5.7137 20 6 0.9821 4.6679 4.4826 21 7 1.5340 3.9524 3.3181 22 6 2.4984 4.7907 2.6514 23 6 3.2716 5.6268 3.6767 24 6 4.0035 4.6420 4.5791 25 1 -0.3633 0.5904 0.8411 26 1 -0.3633 0.4333 -0.9318 27 1 -0.3633 -1.0236 0.0908 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.2991 0.4439 -1.8030 31 1 1.3894 3.1150 1.0088 32 1 2.6396 0.8956 2.4933 33 1 3.4179 2.4475 2.1003 34 1 2.4595 1.8093 5.5094 35 1 3.8026 2.0490 4.3658 36 1 1.3173 3.7367 6.3944 37 1 2.0598 5.3447 6.2190 38 1 0.9654 5.7380 4.2755 39 1 -0.0336 4.3212 4.6726 40 1 3.1967 4.1657 2.0948 41 1 1.9814 5.4574 1.9613 42 1 3.9889 6.2710 3.1683 43 1 2.5797 6.2302 4.2643 44 1 4.6682 4.0321 3.9674 45 1 4.6027 5.2019 5.2971 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394691485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:48 Heat of formation + Delta-G solvation = 6.775692 kcal Electronic energy + Delta-G solvation = -22356.551289 eV Core-core repulsion = 19408.267271 eV Total energy + Delta-G solvation = -2948.284018 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.24478 -38.40494 -35.80175 -34.89339 -33.81518 -32.87051 -31.56260 -28.30927 -26.92504 -26.65901 -25.61608 -24.90082 -23.41245 -21.41150 -20.99351 -19.70565 -18.88970 -18.20921 -17.57938 -16.79217 -16.04002 -15.98255 -15.70642 -15.38251 -15.13481 -14.81981 -14.41190 -14.19129 -13.87460 -13.76152 -13.58690 -13.22372 -13.19884 -13.04474 -12.70871 -12.68636 -12.60797 -12.31312 -12.01261 -11.96252 -11.95221 -11.73876 -11.64055 -11.44413 -11.29451 -10.55830 -10.43384 -9.58339 -9.05457 -8.58546 -8.49398 -6.28535 1.52798 1.60312 1.77473 2.56779 2.69354 3.17049 3.21500 3.43475 3.66771 3.83821 3.88556 4.06006 4.14605 4.20210 4.33184 4.38451 4.40039 4.49603 4.56078 4.58120 4.65456 4.68506 4.76521 4.76859 4.84485 4.88538 4.93571 5.00288 5.03119 5.04177 5.12094 5.14805 5.22094 5.40105 5.56803 5.70581 5.90841 6.03392 6.11707 6.28560 6.41950 6.50368 6.59493 6.66754 6.89697 7.50409 8.79034 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.026952 B = 0.005265 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.640103 B = 5316.928549 C = 5697.394784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.100 4.100 3 C 0.208 3.792 4 H -0.048 1.048 5 C -0.595 4.595 6 H 0.046 0.954 7 C -0.024 4.024 8 N -0.935 5.935 9 Si 1.110 2.890 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.662 5.662 14 C 0.071 3.929 15 C 0.100 3.900 16 H 0.082 0.918 17 C 0.049 3.951 18 N -0.576 5.576 19 C 0.045 3.955 20 C 0.036 3.964 21 N -0.576 5.576 22 C 0.072 3.928 23 C -0.175 4.175 24 C 0.081 3.919 25 H 0.059 0.941 26 H 0.032 0.968 27 H 0.040 0.960 28 H 0.031 0.969 29 H 0.031 0.969 30 H 0.257 0.743 31 H 0.337 0.663 32 H 0.061 0.939 33 H 0.001 0.999 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.041 0.959 41 H 0.061 0.939 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.046 0.954 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.340 8.378 16.891 18.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.139 4.139 3 C 0.099 3.901 4 H -0.031 1.031 5 C -0.633 4.633 6 H 0.064 0.936 7 C -0.223 4.223 8 N -0.573 5.573 9 Si 0.933 3.067 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.293 5.293 14 C -0.059 4.059 15 C -0.011 4.011 16 H 0.100 0.900 17 C -0.082 4.082 18 N -0.297 5.297 19 C -0.083 4.083 20 C -0.092 4.092 21 N -0.298 5.298 22 C -0.056 4.056 23 C -0.215 4.215 24 C -0.046 4.046 25 H 0.078 0.922 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.156 0.844 32 H 0.080 0.920 33 H 0.019 0.981 34 H 0.109 0.891 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.065 0.935 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.817 7.631 15.488 17.361 hybrid contribution 1.388 0.475 0.759 1.651 sum -0.429 8.106 16.247 18.162 Atomic orbital electron populations 1.21277 0.94983 0.98982 1.01124 1.21365 0.97512 0.97434 0.97563 1.19055 0.89939 0.92487 0.88646 1.03052 1.22258 1.30689 1.17398 0.92970 0.93606 1.26997 0.95441 0.95446 1.04382 1.70868 1.25166 1.28256 1.32991 0.83014 0.75595 0.75737 0.72334 1.20124 1.21291 1.19793 1.60434 1.46101 1.17608 1.05126 1.22105 0.92614 0.99185 0.91981 1.21380 0.98597 0.87453 0.93674 0.90011 1.22414 0.99041 0.90551 0.96210 1.57720 1.17610 1.04577 1.49839 1.22483 0.88392 1.00608 0.96832 1.22743 0.98681 0.98991 0.88789 1.57084 1.41273 1.01611 1.29874 1.21542 0.93000 0.94757 0.96271 1.22923 1.00854 0.99094 0.98630 1.21222 0.94272 0.93889 0.95265 0.92219 0.94885 0.94072 0.95017 0.95027 0.93242 0.84404 0.92031 0.98074 0.89114 0.91963 0.89912 0.89300 0.89776 0.90875 0.94009 0.92086 0.89970 0.89200 0.93514 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.70 9.48 71.98 0.68 -4.02 16 2 C -0.10 -4.86 5.51 30.60 0.17 -4.69 16 3 C 0.21 10.60 1.94 44.17 0.09 10.69 16 4 H -0.05 -2.74 7.22 -2.39 -0.02 -2.76 16 5 C -0.59 -33.09 7.35 25.60 0.19 -32.90 16 6 H 0.05 2.57 7.61 -2.91 -0.02 2.55 16 7 C -0.02 -1.36 5.24 84.66 0.44 -0.92 16 8 N -0.94 -56.87 12.83 21.45 0.28 -56.59 16 9 Si 1.11 50.71 29.91 68.60 2.05 52.76 16 10 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 12 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 13 N -0.66 -28.28 5.39 -495.43 -2.67 -30.95 16 14 C 0.07 2.57 4.08 86.30 0.35 2.92 16 15 C 0.10 2.83 2.74 45.74 0.13 2.95 16 16 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 17 C 0.05 1.17 5.75 86.91 0.50 1.67 16 18 N -0.58 -12.47 4.37 -910.85 -3.98 -16.45 16 19 C 0.05 0.81 5.51 86.24 0.47 1.29 16 20 C 0.04 0.74 5.71 86.15 0.49 1.24 16 21 N -0.58 -15.64 3.60 -884.23 -3.19 -18.83 16 22 C 0.07 1.99 4.67 86.90 0.41 2.39 16 23 C -0.17 -3.60 5.75 30.45 0.18 -3.42 16 24 C 0.08 1.74 5.74 86.63 0.50 2.24 16 25 H 0.06 2.54 7.44 -2.39 -0.02 2.53 16 26 H 0.03 1.57 7.41 -2.39 -0.02 1.55 16 27 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.03 1.70 6.18 -2.39 -0.01 1.69 16 29 H 0.03 1.41 7.63 -2.39 -0.02 1.39 16 30 H 0.26 15.94 6.06 -92.71 -0.56 15.37 16 31 H 0.34 14.96 6.65 -89.70 -0.60 14.36 16 32 H 0.06 2.25 7.59 -2.39 -0.02 2.23 16 33 H 0.00 0.05 6.43 -2.38 -0.02 0.03 16 34 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 35 H 0.06 1.60 7.27 -2.39 -0.02 1.59 16 36 H 0.08 1.37 8.12 -2.39 -0.02 1.35 16 37 H 0.09 1.32 7.90 -2.39 -0.02 1.30 16 38 H 0.08 1.57 6.21 -2.39 -0.01 1.55 16 39 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.04 1.39 5.57 -2.39 -0.01 1.38 16 41 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.09 1.60 5.30 -2.38 -0.01 1.59 16 44 H 0.05 1.15 7.64 -2.39 -0.02 1.13 16 45 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -61.93 322.15 -2.35 -64.28 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: 0.57 Total: 26.34 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: 4.59 Total: -20.56 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -9.57 Total: -122.82 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 2.05 Total: 52.76 kcal Total: -61.93 -2.35 -64.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394691485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.059 kcal (2) G-P(sol) polarization free energy of solvation -61.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds