Wall clock time and date at job start Mon Mar 30 2020 04:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35752 * 116.99971 * 2 1 4 4 C 1.35945 * 126.19352 * 183.30584 * 3 2 1 5 5 C 1.39816 * 107.83739 * 179.84680 * 4 3 2 6 6 C 1.50705 * 125.85982 * 180.16082 * 5 4 3 7 7 N 1.46904 * 109.47031 * 95.27714 * 6 5 4 8 8 C 1.46895 * 110.99963 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.47194 * 180.02562 * 8 7 6 10 10 C 1.52993 * 109.47185 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.47185 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47334 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00047 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99805 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00295 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99687 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47169 * 90.00145 * 16 14 12 18 18 H 1.48501 * 109.47018 * 210.00505 * 16 14 12 19 19 H 1.48508 * 109.47054 * 330.00065 * 16 14 12 20 20 N 1.30832 * 108.28269 * 0.42045 * 5 4 3 21 21 N 1.35134 * 126.19513 * 3.61700 * 3 2 1 22 22 C 1.46503 * 126.03651 * 359.96163 * 21 3 2 23 23 H 1.09002 * 109.46862 * 306.97621 * 1 2 3 24 24 H 1.09001 * 109.46911 * 66.97084 * 1 2 3 25 25 H 1.08996 * 109.47278 * 186.97562 * 1 2 3 26 26 H 1.08006 * 126.08195 * 359.96407 * 4 3 2 27 27 H 1.09000 * 109.47028 * 215.27316 * 6 5 4 28 28 H 1.09000 * 109.47030 * 335.27804 * 6 5 4 29 29 H 1.00892 * 110.99990 * 303.95559 * 7 6 5 30 30 H 1.08999 * 109.47421 * 299.99965 * 8 7 6 31 31 H 1.09007 * 109.46992 * 60.00175 * 8 7 6 32 32 H 1.08999 * 109.46828 * 300.00229 * 9 8 7 33 33 H 1.09000 * 109.47072 * 59.99721 * 9 8 7 34 34 H 1.08999 * 109.47310 * 299.99794 * 10 9 8 35 35 H 1.09004 * 109.47216 * 60.00531 * 10 9 8 36 36 H 1.08999 * 109.46828 * 300.00089 * 11 10 9 37 37 H 1.09000 * 109.47072 * 59.99580 * 11 10 9 38 38 H 0.96997 * 119.99803 * 179.97438 * 15 14 12 39 39 H 1.08997 * 109.46939 * 82.76663 * 22 21 3 40 40 H 1.09005 * 109.47015 * 202.76892 * 22 21 3 41 41 H 1.08998 * 109.46981 * 322.76089 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 3.3857 1.4276 -0.0633 5 6 3.5963 2.8096 -0.0414 6 6 4.9350 3.4997 -0.0969 7 7 5.2377 3.8701 -1.4859 8 6 6.5380 4.5471 -1.5786 9 6 6.8175 4.9172 -3.0367 10 6 8.1721 5.6218 -3.1334 11 6 8.4518 5.9913 -4.5916 12 6 9.7864 6.6847 -4.6870 13 1 10.3763 6.8454 -3.7967 14 6 10.2547 7.1130 -5.9110 15 7 9.5367 6.9169 -6.9952 16 14 11.9094 7.9720 -6.0293 17 1 12.9759 6.9632 -6.2530 18 1 11.8893 8.9309 -7.1630 19 1 12.1782 8.7047 -4.7659 20 7 2.4322 3.4009 0.0411 21 7 1.4379 2.4147 0.0688 22 6 -0.0057 2.6485 0.1560 23 1 -0.3633 0.6181 0.8210 24 1 -0.3633 0.4020 -0.9458 25 1 -0.3633 -1.0200 0.1248 26 1 4.1516 0.6683 -0.1220 27 1 4.9068 4.3974 0.5206 28 1 5.7066 2.8261 0.2759 29 1 5.2059 3.0630 -2.0905 30 1 6.5206 5.4522 -0.9714 31 1 7.3211 3.8812 -1.2159 32 1 6.8347 4.0124 -3.6443 33 1 6.0344 5.5832 -3.3990 34 1 8.1553 6.5265 -2.5258 35 1 8.9550 4.9553 -2.7714 36 1 8.4688 5.0863 -5.1989 37 1 7.6690 6.6575 -4.9542 38 1 9.8661 7.2186 -7.8562 39 1 -0.3278 2.5493 1.1926 40 1 -0.2333 3.6531 -0.2007 41 1 -0.5300 1.9172 -0.4591 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395385230.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:09 Heat of formation + Delta-G solvation = 39.990480 kcal Electronic energy + Delta-G solvation = -19196.901257 eV Core-core repulsion = 16114.224446 eV Total energy + Delta-G solvation = -3082.676811 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.79970 -38.71854 -36.69020 -34.44831 -33.44227 -32.04146 -30.35628 -29.02314 -27.84441 -26.69629 -25.11229 -23.55472 -21.71601 -21.33556 -20.30328 -19.78624 -17.86946 -17.00573 -16.21042 -16.08583 -15.74807 -15.30314 -14.99502 -14.60226 -14.38129 -14.32794 -14.11309 -13.62052 -13.41341 -13.28768 -12.42214 -12.24949 -12.21588 -11.72149 -11.66039 -11.52640 -11.29254 -10.94927 -10.65854 -10.48362 -10.43341 -10.35486 -9.55142 -9.30004 -9.16013 -8.93216 -8.54299 -8.30653 -8.26831 -5.92514 -3.94460 1.63763 2.03402 2.51609 2.64816 3.36577 3.42427 3.46212 3.98212 4.31033 4.37353 4.47416 4.53380 4.63389 4.69239 4.76986 5.02548 5.08832 5.17874 5.41307 5.42983 5.51888 5.57095 5.64988 5.70853 5.96958 5.99796 6.23935 6.32332 6.40758 6.59748 6.91284 7.03774 7.07871 7.10597 7.30157 7.45021 7.55155 7.77502 7.94068 8.09290 8.52034 9.13264 9.69050 11.18873 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.050320 B = 0.002268 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.304233 B =12343.598411 C =12432.449589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.293 6.293 3 C 0.270 3.730 4 C -0.286 4.286 5 C 0.107 3.893 6 C 0.138 3.862 7 N -0.685 5.685 8 C 0.061 3.939 9 C -0.115 4.115 10 C -0.109 4.109 11 C 0.020 3.980 12 C -0.519 4.519 13 H 0.054 0.946 14 C 0.054 3.946 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 N -0.267 5.267 21 N -0.406 5.406 22 C 0.080 3.920 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.107 0.893 26 H 0.154 0.846 27 H 0.088 0.912 28 H 0.052 0.948 29 H 0.343 0.657 30 H 0.071 0.929 31 H 0.029 0.971 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.045 0.955 36 H 0.014 0.986 37 H 0.016 0.984 38 H 0.259 0.741 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.627 -14.079 16.841 30.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.199 6.199 3 C 0.102 3.898 4 C -0.316 4.316 5 C -0.061 4.061 6 C 0.008 3.992 7 N -0.317 5.317 8 C -0.068 4.068 9 C -0.153 4.153 10 C -0.147 4.147 11 C -0.017 4.017 12 C -0.557 4.557 13 H 0.072 0.928 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 N -0.092 5.092 21 N -0.200 5.200 22 C -0.061 4.061 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.125 0.875 26 H 0.171 0.829 27 H 0.106 0.894 28 H 0.070 0.930 29 H 0.161 0.839 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.033 0.967 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.696 -12.652 16.768 30.198 hybrid contribution 1.442 -1.047 -0.119 1.786 sum -20.254 -13.699 16.649 29.581 Atomic orbital electron populations 1.23625 0.78237 1.05112 1.01472 1.86277 1.21450 1.22234 1.89961 1.19608 0.91425 0.78923 0.99800 1.20389 0.91986 0.96524 1.22653 1.21949 0.94558 0.91523 0.98080 1.20233 0.88480 0.98642 0.91887 1.60437 1.33142 1.31706 1.06371 1.22093 0.87543 0.98060 0.99081 1.21633 0.99244 1.00746 0.93720 1.21588 0.93713 0.98430 1.00956 1.19098 0.96353 0.96447 0.89780 1.21300 1.03956 1.37303 0.93143 0.92754 1.25043 0.97359 0.96263 0.95966 1.69970 1.37725 1.47435 0.98473 0.86610 0.84392 0.79479 0.77602 1.20732 1.21280 1.19904 1.77536 0.95331 1.10464 1.25889 1.48908 1.07069 1.03173 1.60839 1.22413 0.75363 1.05416 1.02886 0.91821 0.91945 0.87466 0.82860 0.89380 0.92952 0.83944 0.91053 0.95286 0.92722 0.91638 0.93404 0.93635 0.96740 0.96603 0.93092 0.90795 0.88501 0.89015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.40 101.05 0.95 1.00 16 2 O -0.29 -2.72 10.57 -18.96 -0.20 -2.92 16 3 C 0.27 3.03 7.79 -16.92 -0.13 2.90 16 4 C -0.29 -3.39 10.76 -39.81 -0.43 -3.82 16 5 C 0.11 1.37 6.72 -82.43 -0.55 0.81 16 6 C 0.14 1.64 6.24 -4.97 -0.03 1.61 16 7 N -0.68 -9.33 6.49 -115.05 -0.75 -10.08 16 8 C 0.06 0.88 5.69 -3.82 -0.02 0.86 16 9 C -0.12 -2.04 5.47 -26.73 -0.15 -2.19 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 11 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 12 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 13 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 14 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.69 13.29 55.43 0.74 -26.96 16 16 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 20 N -0.27 -3.66 12.57 33.66 0.42 -3.24 16 21 N -0.41 -4.43 4.02 -68.28 -0.27 -4.71 16 22 C 0.08 0.48 9.59 59.85 0.57 1.06 16 23 H 0.06 0.21 5.81 -51.93 -0.30 -0.10 16 24 H 0.06 0.22 6.62 -51.93 -0.34 -0.12 16 25 H 0.11 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.15 1.57 8.06 -52.48 -0.42 1.15 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.34 4.48 8.72 -39.30 -0.34 4.14 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.07 0.31 7.64 -51.93 -0.40 -0.08 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.33 4.65 -51.93 -0.24 0.09 16 LS Contribution 339.40 15.07 5.11 5.11 Total: -1.00 -34.57 339.40 -7.11 -41.68 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -6.66 Total: -2.26 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -0.48 Total: -13.76 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: 0.14 Total: -44.98 kcal Atomic # 8 Polarization: -2.72 SS G_CDS: -0.20 Total: -2.92 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.57 -7.11 -41.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395385230.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.670 kcal (2) G-P(sol) polarization free energy of solvation -34.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds