Wall clock time and date at job start Mon Mar 30 2020 04:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35752 * 116.99971 * 2 1 4 4 C 1.35945 * 126.19352 * 183.30584 * 3 2 1 5 5 C 1.39816 * 107.83739 * 179.84680 * 4 3 2 6 6 C 1.50705 * 125.85982 * 180.16082 * 5 4 3 7 7 N 1.46904 * 109.47031 * 95.27714 * 6 5 4 8 8 C 1.46895 * 110.99963 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.47194 * 180.02562 * 8 7 6 10 10 C 1.52993 * 109.47185 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.47185 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47334 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00047 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99805 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00295 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99687 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47169 * 90.00145 * 16 14 12 18 18 H 1.48501 * 109.47018 * 210.00505 * 16 14 12 19 19 H 1.48508 * 109.47054 * 330.00065 * 16 14 12 20 20 N 1.30832 * 108.28269 * 0.42045 * 5 4 3 21 21 N 1.35134 * 126.19513 * 3.61700 * 3 2 1 22 22 C 1.46503 * 126.03651 * 359.96163 * 21 3 2 23 23 H 1.09002 * 109.46862 * 306.97621 * 1 2 3 24 24 H 1.09001 * 109.46911 * 66.97084 * 1 2 3 25 25 H 1.08996 * 109.47278 * 186.97562 * 1 2 3 26 26 H 1.08006 * 126.08195 * 359.96407 * 4 3 2 27 27 H 1.09000 * 109.47028 * 215.27316 * 6 5 4 28 28 H 1.09000 * 109.47030 * 335.27804 * 6 5 4 29 29 H 1.00892 * 110.99990 * 303.95559 * 7 6 5 30 30 H 1.08999 * 109.47421 * 299.99965 * 8 7 6 31 31 H 1.09007 * 109.46992 * 60.00175 * 8 7 6 32 32 H 1.08999 * 109.46828 * 300.00229 * 9 8 7 33 33 H 1.09000 * 109.47072 * 59.99721 * 9 8 7 34 34 H 1.08999 * 109.47310 * 299.99794 * 10 9 8 35 35 H 1.09004 * 109.47216 * 60.00531 * 10 9 8 36 36 H 1.08999 * 109.46828 * 300.00089 * 11 10 9 37 37 H 1.09000 * 109.47072 * 59.99580 * 11 10 9 38 38 H 0.96997 * 119.99803 * 179.97438 * 15 14 12 39 39 H 1.08997 * 109.46939 * 82.76663 * 22 21 3 40 40 H 1.09005 * 109.47015 * 202.76892 * 22 21 3 41 41 H 1.08998 * 109.46981 * 322.76089 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 3.3857 1.4276 -0.0633 5 6 3.5963 2.8096 -0.0414 6 6 4.9350 3.4997 -0.0969 7 7 5.2377 3.8701 -1.4859 8 6 6.5380 4.5471 -1.5786 9 6 6.8175 4.9172 -3.0367 10 6 8.1721 5.6218 -3.1334 11 6 8.4518 5.9913 -4.5916 12 6 9.7864 6.6847 -4.6870 13 1 10.3763 6.8454 -3.7967 14 6 10.2547 7.1130 -5.9110 15 7 9.5367 6.9169 -6.9952 16 14 11.9094 7.9720 -6.0293 17 1 12.9759 6.9632 -6.2530 18 1 11.8893 8.9309 -7.1630 19 1 12.1782 8.7047 -4.7659 20 7 2.4322 3.4009 0.0411 21 7 1.4379 2.4147 0.0688 22 6 -0.0057 2.6485 0.1560 23 1 -0.3633 0.6181 0.8210 24 1 -0.3633 0.4020 -0.9458 25 1 -0.3633 -1.0200 0.1248 26 1 4.1516 0.6683 -0.1220 27 1 4.9068 4.3974 0.5206 28 1 5.7066 2.8261 0.2759 29 1 5.2059 3.0630 -2.0905 30 1 6.5206 5.4522 -0.9714 31 1 7.3211 3.8812 -1.2159 32 1 6.8347 4.0124 -3.6443 33 1 6.0344 5.5832 -3.3990 34 1 8.1553 6.5265 -2.5258 35 1 8.9550 4.9553 -2.7714 36 1 8.4688 5.0863 -5.1989 37 1 7.6690 6.6575 -4.9542 38 1 9.8661 7.2186 -7.8562 39 1 -0.3278 2.5493 1.1926 40 1 -0.2333 3.6531 -0.2007 41 1 -0.5300 1.9172 -0.4591 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395385230.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:09 Heat of formation + Delta-G solvation = 14.780304 kcal Electronic energy + Delta-G solvation = -19197.994452 eV Core-core repulsion = 16114.224446 eV Total energy + Delta-G solvation = -3083.770006 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.57983 -39.40593 -37.88650 -36.02585 -34.63825 -33.69991 -31.25939 -30.34819 -28.80356 -27.55596 -26.35000 -24.99616 -22.83002 -22.45533 -21.80858 -20.90679 -18.63277 -18.36380 -17.62827 -17.07978 -16.53772 -16.43723 -16.26898 -15.82049 -15.66741 -15.19864 -14.96093 -14.60344 -14.37486 -14.08189 -13.88677 -13.73917 -13.61259 -13.02109 -12.95325 -12.81618 -12.31813 -12.27314 -12.17027 -12.09393 -12.05124 -11.47020 -11.32558 -11.27653 -10.98604 -10.53437 -10.01436 -9.38370 -9.31825 -8.17863 -6.29280 0.80993 1.33495 1.40760 1.42854 1.54015 1.64207 2.07390 2.42674 3.14685 3.26760 3.44601 3.91294 4.01390 4.15099 4.16926 4.23644 4.27306 4.33695 4.42451 4.47564 4.56373 4.64467 4.68631 4.73730 4.75713 4.89010 4.95004 4.98610 5.20719 5.28853 5.31376 5.39902 5.56648 5.58590 5.81593 5.89670 6.07618 6.28204 6.39498 6.43383 6.67297 6.88644 7.39863 8.94129 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.050320 B = 0.002268 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.304233 B =12343.598411 C =12432.449589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.003 4.003 2 O -0.305 6.305 3 C 0.271 3.729 4 C -0.306 4.306 5 C 0.097 3.903 6 C 0.142 3.858 7 N -0.695 5.695 8 C 0.073 3.927 9 C -0.106 4.106 10 C -0.096 4.096 11 C 0.021 3.979 12 C -0.543 4.543 13 H 0.061 0.939 14 C -0.006 4.006 15 N -0.936 5.936 16 Si 0.968 3.032 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.262 1.262 20 N -0.304 5.304 21 N -0.405 5.405 22 C 0.067 3.933 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.130 0.870 26 H 0.163 0.837 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.345 0.655 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.054 0.946 36 H -0.011 1.011 37 H -0.013 1.013 38 H 0.263 0.737 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.774 -14.697 18.180 31.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 O -0.212 6.212 3 C 0.102 3.898 4 C -0.336 4.336 5 C -0.070 4.070 6 C 0.012 3.988 7 N -0.327 5.327 8 C -0.055 4.055 9 C -0.144 4.144 10 C -0.134 4.134 11 C -0.016 4.016 12 C -0.581 4.581 13 H 0.080 0.920 14 C -0.203 4.203 15 N -0.576 5.576 16 Si 0.792 3.208 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.186 1.186 20 N -0.131 5.131 21 N -0.200 5.200 22 C -0.072 4.072 23 H 0.097 0.903 24 H 0.091 0.909 25 H 0.148 0.852 26 H 0.180 0.820 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.163 0.837 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.008 0.992 37 H 0.005 0.995 38 H 0.072 0.928 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -21.868 -13.282 18.127 31.356 hybrid contribution 1.330 -0.925 -0.550 1.711 sum -20.537 -14.206 17.577 30.538 Atomic orbital electron populations 1.24008 0.75792 1.07189 1.02685 1.86285 1.24043 1.21148 1.89704 1.19714 0.91594 0.79671 0.98806 1.20604 0.92959 0.96469 1.23594 1.22063 0.94611 0.92023 0.98305 1.20237 0.88865 0.99021 0.90670 1.60355 1.32504 1.32170 1.07696 1.21866 0.88573 0.98705 0.96391 1.21460 0.96725 0.99928 0.96279 1.21394 0.95949 0.99163 0.96935 1.19039 0.94946 0.94519 0.93077 1.21758 1.04971 1.37675 0.93688 0.92031 1.26056 1.01758 0.96967 0.95512 1.70112 1.39895 1.48446 0.99158 0.85409 0.79014 0.78353 0.78032 1.19649 1.20791 1.18638 1.77432 0.96271 1.12124 1.27254 1.49192 1.08181 1.02648 1.59982 1.22834 0.73181 1.06301 1.04881 0.90314 0.90906 0.85150 0.81978 0.89525 0.91017 0.83699 0.90750 0.93809 0.92842 0.93078 0.92984 0.92729 0.99238 0.99454 0.92822 0.88739 0.88632 0.86401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 9.40 113.37 1.07 1.04 16 2 O -0.31 -5.20 10.57 -90.77 -0.96 -6.16 16 3 C 0.27 5.81 7.79 83.65 0.65 6.46 16 4 C -0.31 -7.12 10.76 22.12 0.24 -6.88 16 5 C 0.10 2.44 6.72 43.09 0.29 2.73 16 6 C 0.14 3.25 6.24 85.56 0.53 3.79 16 7 N -0.69 -18.41 6.49 -517.91 -3.36 -21.77 16 8 C 0.07 2.04 5.69 86.31 0.49 2.53 16 9 C -0.11 -3.73 5.47 30.59 0.17 -3.57 16 10 C -0.10 -4.06 5.15 30.59 0.16 -3.90 16 11 C 0.02 1.17 4.97 29.85 0.15 1.32 16 12 C -0.54 -31.97 9.11 25.60 0.23 -31.73 16 13 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 14 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 15 N -0.94 -58.80 13.29 21.45 0.28 -58.52 16 16 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 18 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 19 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 20 N -0.30 -8.27 12.57 -47.42 -0.60 -8.87 16 21 N -0.40 -8.45 4.02 -481.26 -1.93 -10.39 16 22 C 0.07 0.69 9.59 127.77 1.23 1.91 16 23 H 0.08 0.28 5.81 -2.39 -0.01 0.27 16 24 H 0.07 0.33 6.62 -2.39 -0.02 0.31 16 25 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 26 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 27 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.34 8.82 8.72 -89.70 -0.78 8.04 16 30 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 36 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 37 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 38 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 39 H 0.09 0.58 7.64 -2.39 -0.02 0.56 16 40 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.12 0.55 4.65 -2.39 -0.01 0.54 16 Total: -1.00 -75.28 339.40 1.36 -73.92 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.23 Total: 10.59 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: 5.66 Total: -26.17 kcal Atomic # 7 Polarization: -93.93 SS G_CDS: -5.61 Total: -99.54 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.96 Total: -6.16 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -75.28 1.36 -73.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395385230.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.701 kcal (2) G-P(sol) polarization free energy of solvation -75.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds