Wall clock time and date at job start Mon Mar 30 2020 06:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46960 * 111.00104 * 2 1 4 4 C 1.53047 * 109.36501 * 183.18915 * 3 2 1 5 5 N 1.46957 * 109.36506 * 301.59580 * 4 3 2 6 6 C 1.46894 * 111.00322 * 183.19199 * 5 4 3 7 7 C 1.52997 * 109.47515 * 170.00049 * 6 5 4 8 8 N 1.46899 * 109.47254 * 179.97438 * 7 6 5 9 9 C 1.47844 * 111.00226 * 290.84366 * 8 7 6 10 10 C 1.54903 * 104.79617 * 213.63396 * 9 8 7 11 11 C 1.55139 * 101.65117 * 37.06999 * 10 9 8 12 12 H 1.09002 * 110.70592 * 82.72824 * 11 10 9 13 13 C 1.50703 * 110.85484 * 205.89133 * 11 10 9 14 14 H 1.07996 * 120.00001 * 113.68550 * 13 11 10 15 15 C 1.37884 * 119.99841 * 293.68588 * 13 11 10 16 16 N 1.31505 * 119.99961 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 119.99826 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47101 * 59.99933 * 17 15 13 19 19 H 1.48498 * 109.47516 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47276 * 300.00234 * 17 15 13 21 21 C 1.47446 * 110.99937 * 169.99935 * 8 7 6 22 22 C 1.46960 * 110.87742 * 59.32142 * 5 4 3 23 23 C 1.46957 * 111.00104 * 123.79718 * 2 1 3 24 24 H 1.08992 * 109.47200 * 60.00266 * 1 2 3 25 25 H 1.08998 * 109.47324 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47053 * 300.00059 * 1 2 3 27 27 H 1.09006 * 109.48624 * 63.21802 * 3 2 1 28 28 H 1.08998 * 109.48711 * 303.15821 * 3 2 1 29 29 H 1.09004 * 109.48758 * 181.63002 * 4 3 2 30 30 H 1.08994 * 109.48963 * 61.56491 * 4 3 2 31 31 H 1.09002 * 109.47104 * 49.99781 * 6 5 4 32 32 H 1.08998 * 109.46828 * 290.00613 * 6 5 4 33 33 H 1.09002 * 109.47153 * 59.99762 * 7 6 5 34 34 H 1.09001 * 109.46832 * 299.99953 * 7 6 5 35 35 H 1.09001 * 110.37215 * 332.46813 * 9 8 7 36 36 H 1.09001 * 110.37280 * 94.80277 * 9 8 7 37 37 H 1.08993 * 110.99404 * 278.97929 * 10 9 8 38 38 H 1.09008 * 111.02354 * 155.17382 * 10 9 8 39 39 H 0.97000 * 119.99986 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.88523 * 242.66658 * 21 8 7 41 41 H 1.08997 * 109.88991 * 3.69180 * 21 8 7 42 42 H 1.08996 * 109.48769 * 60.64915 * 22 5 4 43 43 H 1.09002 * 109.48610 * 180.71463 * 22 5 4 44 44 H 1.09003 * 109.49001 * 296.78135 * 23 2 1 45 45 H 1.09004 * 109.48815 * 56.84540 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5234 1.3291 -0.0803 5 7 4.0501 0.5659 1.0598 6 6 5.5190 0.5660 1.0599 7 6 6.0291 -0.0161 2.3797 8 7 7.4981 -0.0166 2.3795 9 6 8.0274 -0.9990 1.4097 10 6 9.3332 -1.5270 2.0543 11 6 8.9445 -1.5748 3.5554 12 1 8.4028 -2.4926 3.7843 13 6 10.1651 -1.4466 4.4300 14 1 10.2940 -0.5737 5.0527 15 6 11.1173 -2.4438 4.4352 16 7 10.9606 -3.5065 3.6766 17 14 12.6306 -2.2846 5.5187 18 1 12.2129 -2.1799 6.9400 19 1 13.4935 -3.4802 5.3427 20 1 13.3886 -1.0668 5.1346 21 6 8.0265 -0.3449 3.7162 22 6 3.5234 -0.8060 1.0598 23 6 1.9957 -0.7632 1.1401 24 1 -0.3633 0.5137 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6937 1.8774 0.9174 28 1 1.6013 1.9129 -0.8602 29 1 3.9178 2.3449 -0.0513 30 1 3.8253 0.8479 -1.0106 31 1 5.8824 1.5876 0.9488 32 1 5.8824 -0.0409 0.2306 33 1 5.6657 -1.0378 2.4907 34 1 5.6657 0.5909 3.2089 35 1 7.3172 -1.8138 1.2688 36 1 8.2433 -0.5139 0.4577 37 1 10.1589 -0.8355 1.8866 38 1 9.5783 -2.5220 1.6826 39 1 11.6306 -4.2079 3.6800 40 1 8.5992 0.4969 4.1055 41 1 7.2045 -0.5786 4.3928 42 1 3.8253 -1.3114 0.1425 43 1 3.9177 -1.3469 1.9201 44 1 1.6937 -0.2820 2.0704 45 1 1.6013 -1.7790 1.1111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397576493.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:46 Heat of formation + Delta-G solvation = 15.141797 kcal Electronic energy + Delta-G solvation = -20885.512012 eV Core-core repulsion = 17937.590776 eV Total energy + Delta-G solvation = -2947.921236 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.50568 -38.05524 -35.71585 -33.15926 -31.31203 -30.95665 -28.91384 -28.22993 -26.41763 -24.30131 -23.91447 -23.38086 -21.56831 -20.00445 -19.62629 -19.46512 -16.59490 -16.33677 -15.52360 -15.22220 -15.08719 -15.02269 -14.66523 -14.49092 -14.03314 -13.88472 -13.32792 -12.73639 -12.63838 -12.46087 -12.28632 -12.13215 -11.76622 -11.66117 -11.41804 -11.23986 -11.01092 -10.94215 -10.75232 -10.68069 -10.60123 -10.42438 -10.12339 -9.63267 -9.26182 -8.86263 -8.63937 -8.39334 -8.33448 -7.56799 -6.01449 -4.03882 3.33171 3.37535 3.40417 3.67762 3.76856 4.44432 4.66783 4.77859 4.83478 4.94856 5.12468 5.13326 5.25842 5.31262 5.31527 5.33089 5.36629 5.51144 5.56847 5.60180 5.73676 5.77648 5.82205 5.85630 5.92564 6.05013 6.18536 6.22836 6.30004 6.39848 6.60353 6.72935 6.74928 6.89548 7.03319 7.06449 7.17034 7.20595 7.60617 7.62746 7.85095 7.91665 8.00982 8.43001 8.97821 9.59949 11.08702 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.051883 B = 0.003159 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.548637 B = 8861.628230 C = 8972.156426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.058 3.942 4 C 0.058 3.942 5 N -0.541 5.541 6 C 0.063 3.937 7 C 0.058 3.942 8 N -0.534 5.534 9 C 0.038 3.962 10 C -0.105 4.105 11 C 0.035 3.965 12 H 0.029 0.971 13 C -0.510 4.510 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.891 5.891 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C 0.050 3.950 22 C 0.053 3.947 23 C 0.057 3.943 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.025 0.975 27 H 0.042 0.958 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.034 0.966 33 H 0.029 0.971 34 H 0.073 0.927 35 H 0.030 0.970 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.260 0.740 40 H 0.069 0.931 41 H 0.033 0.967 42 H 0.041 0.959 43 H 0.084 0.916 44 H 0.042 0.958 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.060 6.920 -7.801 20.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.071 4.071 4 C -0.070 4.070 5 N -0.266 5.266 6 C -0.064 4.064 7 C -0.071 4.071 8 N -0.258 5.258 9 C -0.090 4.090 10 C -0.144 4.144 11 C 0.016 3.984 12 H 0.047 0.953 13 C -0.549 4.549 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.202 1.202 21 C -0.077 4.077 22 C -0.075 4.075 23 C -0.071 4.071 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.044 0.956 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.091 0.909 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.051 0.949 42 H 0.060 0.940 43 H 0.102 0.898 44 H 0.061 0.939 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.821 7.252 -7.985 20.831 hybrid contribution 0.527 -0.848 0.760 1.255 sum -17.294 6.404 -7.225 19.806 Atomic orbital electron populations 1.22336 0.87302 1.02040 1.00582 1.62162 1.07726 1.14124 1.43198 1.22169 0.94792 0.89198 1.00897 1.22123 0.93997 0.98686 0.92230 1.62089 1.08411 1.13686 1.42452 1.22046 0.85204 1.01801 0.97381 1.22189 0.89081 0.98722 0.97105 1.63510 1.05474 1.49114 1.07737 1.23138 0.97859 0.92479 0.95497 1.22635 0.93864 1.00031 0.97868 1.19798 0.94011 0.92019 0.92594 0.95258 1.21045 1.04647 1.04767 1.24433 0.92491 1.24983 0.98209 0.95213 0.95549 1.69947 1.35223 1.08579 1.39209 0.86662 0.82909 0.77419 0.81031 1.20292 1.21376 1.20217 1.22974 0.97186 0.99975 0.87600 1.22220 0.93870 0.89944 1.01502 1.22182 0.94862 0.98270 0.91755 0.91437 0.91404 0.95631 0.93965 0.90459 0.90181 0.94086 0.90115 0.94756 0.95334 0.90858 0.95189 0.92286 0.92476 0.91336 0.93013 0.91277 0.94881 0.94033 0.89814 0.93932 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.60 60.06 0.58 0.78 16 2 N -0.55 -5.54 4.97 -242.76 -1.21 -6.74 16 3 C 0.06 0.55 5.62 -3.77 -0.02 0.53 16 4 C 0.06 0.62 5.61 -3.77 -0.02 0.60 16 5 N -0.54 -6.78 4.71 -234.48 -1.10 -7.88 16 6 C 0.06 0.89 5.00 -3.83 -0.02 0.87 16 7 C 0.06 0.94 4.50 -3.83 -0.02 0.92 16 8 N -0.53 -10.25 5.16 -231.26 -1.19 -11.44 16 9 C 0.04 0.74 5.78 -2.30 -0.01 0.73 16 10 C -0.11 -2.48 5.95 -24.60 -0.15 -2.63 16 11 C 0.04 0.88 2.77 -89.95 -0.25 0.63 16 12 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 13 C -0.51 -14.07 8.48 -34.44 -0.29 -14.37 16 14 H 0.06 1.55 7.53 -52.49 -0.40 1.15 16 15 C 0.06 1.73 5.36 -17.82 -0.10 1.63 16 16 N -0.89 -25.69 12.48 55.43 0.69 -25.00 16 17 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 C 0.05 1.07 6.45 -2.84 -0.02 1.05 16 22 C 0.05 0.63 5.41 -3.77 -0.02 0.61 16 23 C 0.06 0.60 5.62 -3.77 -0.02 0.58 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.48 8.13 -51.93 -0.42 0.06 16 26 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 30 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 1.13 8.03 -51.93 -0.42 0.71 16 32 H 0.03 0.50 7.47 -51.93 -0.39 0.11 16 33 H 0.03 0.48 6.20 -51.93 -0.32 0.15 16 34 H 0.07 1.18 8.03 -51.93 -0.42 0.77 16 35 H 0.03 0.57 7.62 -51.93 -0.40 0.18 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.40 8.04 -51.93 -0.42 0.98 16 38 H 0.07 1.72 7.76 -51.92 -0.40 1.32 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.07 1.53 7.63 -51.93 -0.40 1.14 16 41 H 0.03 0.67 7.55 -51.93 -0.39 0.28 16 42 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 1.04 6.34 -51.93 -0.33 0.71 16 44 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.72 8.13 -51.93 -0.42 0.30 16 LS Contribution 342.46 15.07 5.16 5.16 Total: -1.00 -28.58 342.46 -11.51 -40.09 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -8.48 Total: -2.48 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -0.36 Total: -8.05 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: -2.81 Total: -51.07 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.58 -11.51 -40.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397576493.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.227 kcal (2) G-P(sol) polarization free energy of solvation -28.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds