Wall clock time and date at job start Mon Mar 30 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46960 * 111.00104 * 2 1 4 4 C 1.53047 * 109.36501 * 183.18915 * 3 2 1 5 5 N 1.46957 * 109.36506 * 301.59580 * 4 3 2 6 6 C 1.46894 * 111.00322 * 183.19199 * 5 4 3 7 7 C 1.52997 * 109.47515 * 170.00049 * 6 5 4 8 8 N 1.46899 * 109.47254 * 179.97438 * 7 6 5 9 9 C 1.47844 * 111.00226 * 290.84366 * 8 7 6 10 10 C 1.54903 * 104.79617 * 213.63396 * 9 8 7 11 11 C 1.55139 * 101.65117 * 37.06999 * 10 9 8 12 12 H 1.09002 * 110.70592 * 82.72824 * 11 10 9 13 13 C 1.50703 * 110.85484 * 205.89133 * 11 10 9 14 14 H 1.07996 * 120.00001 * 113.68550 * 13 11 10 15 15 C 1.37884 * 119.99841 * 293.68588 * 13 11 10 16 16 N 1.31505 * 119.99961 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 119.99826 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47101 * 59.99933 * 17 15 13 19 19 H 1.48498 * 109.47516 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47276 * 300.00234 * 17 15 13 21 21 C 1.47446 * 110.99937 * 169.99935 * 8 7 6 22 22 C 1.46960 * 110.87742 * 59.32142 * 5 4 3 23 23 C 1.46957 * 111.00104 * 123.79718 * 2 1 3 24 24 H 1.08992 * 109.47200 * 60.00266 * 1 2 3 25 25 H 1.08998 * 109.47324 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47053 * 300.00059 * 1 2 3 27 27 H 1.09006 * 109.48624 * 63.21802 * 3 2 1 28 28 H 1.08998 * 109.48711 * 303.15821 * 3 2 1 29 29 H 1.09004 * 109.48758 * 181.63002 * 4 3 2 30 30 H 1.08994 * 109.48963 * 61.56491 * 4 3 2 31 31 H 1.09002 * 109.47104 * 49.99781 * 6 5 4 32 32 H 1.08998 * 109.46828 * 290.00613 * 6 5 4 33 33 H 1.09002 * 109.47153 * 59.99762 * 7 6 5 34 34 H 1.09001 * 109.46832 * 299.99953 * 7 6 5 35 35 H 1.09001 * 110.37215 * 332.46813 * 9 8 7 36 36 H 1.09001 * 110.37280 * 94.80277 * 9 8 7 37 37 H 1.08993 * 110.99404 * 278.97929 * 10 9 8 38 38 H 1.09008 * 111.02354 * 155.17382 * 10 9 8 39 39 H 0.97000 * 119.99986 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.88523 * 242.66658 * 21 8 7 41 41 H 1.08997 * 109.88991 * 3.69180 * 21 8 7 42 42 H 1.08996 * 109.48769 * 60.64915 * 22 5 4 43 43 H 1.09002 * 109.48610 * 180.71463 * 22 5 4 44 44 H 1.09003 * 109.49001 * 296.78135 * 23 2 1 45 45 H 1.09004 * 109.48815 * 56.84540 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5234 1.3291 -0.0803 5 7 4.0501 0.5659 1.0598 6 6 5.5190 0.5660 1.0599 7 6 6.0291 -0.0161 2.3797 8 7 7.4981 -0.0166 2.3795 9 6 8.0274 -0.9990 1.4097 10 6 9.3332 -1.5270 2.0543 11 6 8.9445 -1.5748 3.5554 12 1 8.4028 -2.4926 3.7843 13 6 10.1651 -1.4466 4.4300 14 1 10.2940 -0.5737 5.0527 15 6 11.1173 -2.4438 4.4352 16 7 10.9606 -3.5065 3.6766 17 14 12.6306 -2.2846 5.5187 18 1 12.2129 -2.1799 6.9400 19 1 13.4935 -3.4802 5.3427 20 1 13.3886 -1.0668 5.1346 21 6 8.0265 -0.3449 3.7162 22 6 3.5234 -0.8060 1.0598 23 6 1.9957 -0.7632 1.1401 24 1 -0.3633 0.5137 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6937 1.8774 0.9174 28 1 1.6013 1.9129 -0.8602 29 1 3.9178 2.3449 -0.0513 30 1 3.8253 0.8479 -1.0106 31 1 5.8824 1.5876 0.9488 32 1 5.8824 -0.0409 0.2306 33 1 5.6657 -1.0378 2.4907 34 1 5.6657 0.5909 3.2089 35 1 7.3172 -1.8138 1.2688 36 1 8.2433 -0.5139 0.4577 37 1 10.1589 -0.8355 1.8866 38 1 9.5783 -2.5220 1.6826 39 1 11.6306 -4.2079 3.6800 40 1 8.5992 0.4969 4.1055 41 1 7.2045 -0.5786 4.3928 42 1 3.8253 -1.3114 0.1425 43 1 3.9177 -1.3469 1.9201 44 1 1.6937 -0.2820 2.0704 45 1 1.6013 -1.7790 1.1111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397576493.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:45 Heat of formation + Delta-G solvation = -5.189890 kcal Electronic energy + Delta-G solvation = -20886.393660 eV Core-core repulsion = 17937.590776 eV Total energy + Delta-G solvation = -2948.802885 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.48965 -39.58574 -36.73752 -35.03740 -32.81821 -31.91577 -30.12081 -30.03421 -27.65180 -26.02223 -24.90370 -24.33334 -22.86561 -21.50593 -21.20179 -20.71838 -18.58759 -17.42470 -16.78687 -16.45099 -16.35263 -16.02143 -15.82999 -15.79966 -15.37912 -15.07185 -14.58727 -14.34276 -13.99254 -13.62615 -13.49189 -13.40992 -13.01013 -12.95295 -12.83548 -12.63246 -12.50421 -12.28887 -12.24792 -12.10398 -11.97048 -11.72160 -11.58632 -11.47807 -11.16284 -10.92975 -10.49532 -9.46006 -9.28629 -9.15274 -8.14580 -6.24222 1.42113 1.43696 1.51241 2.42808 2.68675 2.97515 3.16837 3.36877 3.88856 3.95788 4.00864 4.09065 4.13742 4.23780 4.35105 4.38337 4.44233 4.48829 4.52757 4.57683 4.61386 4.62569 4.69011 4.82604 4.84489 4.88757 4.91710 4.96649 4.99302 5.01498 5.04681 5.09629 5.26303 5.34162 5.57095 5.70157 5.86527 5.91061 5.95249 6.10427 6.13547 6.17191 6.29961 6.35842 6.84321 7.43196 8.94953 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.051883 B = 0.003159 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.548637 B = 8861.628230 C = 8972.156426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.560 5.560 3 C 0.061 3.939 4 C 0.057 3.943 5 N -0.545 5.545 6 C 0.075 3.925 7 C 0.062 3.938 8 N -0.532 5.532 9 C 0.052 3.948 10 C -0.099 4.099 11 C 0.027 3.973 12 H -0.002 1.002 13 C -0.530 4.530 14 H 0.056 0.944 15 C 0.012 3.988 16 N -0.921 5.921 17 Si 0.957 3.043 18 H -0.270 1.270 19 H -0.285 1.285 20 H -0.270 1.270 21 C 0.061 3.939 22 C 0.054 3.946 23 C 0.062 3.938 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.027 0.973 27 H 0.038 0.962 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.035 0.965 31 H 0.084 0.916 32 H 0.029 0.971 33 H 0.024 0.976 34 H 0.076 0.924 35 H 0.034 0.966 36 H 0.081 0.919 37 H 0.043 0.957 38 H 0.045 0.955 39 H 0.261 0.739 40 H 0.064 0.936 41 H 0.041 0.959 42 H 0.032 0.968 43 H 0.075 0.925 44 H 0.038 0.962 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.077 8.115 -8.169 22.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.285 5.285 3 C -0.067 4.067 4 C -0.071 4.071 5 N -0.271 5.271 6 C -0.053 4.053 7 C -0.066 4.066 8 N -0.257 5.257 9 C -0.075 4.075 10 C -0.138 4.138 11 C 0.007 3.993 12 H 0.016 0.984 13 C -0.568 4.568 14 H 0.075 0.925 15 C -0.187 4.187 16 N -0.560 5.560 17 Si 0.782 3.218 18 H -0.195 1.195 19 H -0.210 1.210 20 H -0.195 1.195 21 C -0.066 4.066 22 C -0.075 4.075 23 C -0.066 4.066 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.053 0.947 31 H 0.103 0.897 32 H 0.047 0.953 33 H 0.042 0.958 34 H 0.095 0.905 35 H 0.053 0.947 36 H 0.099 0.901 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.093 0.907 44 H 0.056 0.944 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.861 8.462 -8.358 22.298 hybrid contribution 0.790 -1.234 0.863 1.700 sum -18.071 7.228 -7.495 20.857 Atomic orbital electron populations 1.22382 0.85830 1.02711 1.01227 1.62188 1.09143 1.14324 1.42860 1.22178 0.93868 0.89185 1.01518 1.22204 0.94914 0.98813 0.91131 1.62095 1.07361 1.14094 1.43535 1.21855 0.86289 1.01573 0.95572 1.22205 0.86931 0.98789 0.98725 1.63520 1.07491 1.48480 1.06202 1.23008 0.95684 0.92820 0.96027 1.22430 0.95470 0.98590 0.97315 1.19772 0.93902 0.92251 0.93351 0.98400 1.21407 1.05680 1.04874 1.24885 0.92539 1.25784 1.01166 0.94879 0.96860 1.70074 1.36186 1.09223 1.40506 0.85630 0.79236 0.77524 0.79397 1.19520 1.21032 1.19535 1.22744 0.96784 0.97922 0.89197 1.22206 0.95098 0.89560 1.00615 1.22121 0.93644 0.99014 0.91835 0.90289 0.90798 0.95427 0.94350 0.88641 0.89084 0.94657 0.89717 0.95320 0.95760 0.90527 0.94723 0.90107 0.93864 0.93637 0.93026 0.91813 0.94016 0.94938 0.90662 0.94385 0.89368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.60 127.69 1.23 1.58 16 2 N -0.56 -10.21 4.97 -921.94 -4.58 -14.79 16 3 C 0.06 1.03 5.62 86.31 0.49 1.51 16 4 C 0.06 1.12 5.61 86.31 0.48 1.60 16 5 N -0.55 -12.82 4.71 -895.75 -4.22 -17.04 16 6 C 0.08 1.97 5.00 86.30 0.43 2.40 16 7 C 0.06 1.92 4.50 86.30 0.39 2.31 16 8 N -0.53 -19.90 5.16 -885.56 -4.57 -24.47 16 9 C 0.05 2.01 5.78 86.77 0.50 2.51 16 10 C -0.10 -4.76 5.95 31.98 0.19 -4.57 16 11 C 0.03 1.37 2.77 -10.36 -0.03 1.34 16 12 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 13 C -0.53 -29.65 8.48 25.60 0.22 -29.44 16 14 H 0.06 3.08 7.53 -2.91 -0.02 3.06 16 15 C 0.01 0.67 5.36 84.66 0.45 1.13 16 16 N -0.92 -54.12 12.48 21.45 0.27 -53.85 16 17 Si 0.96 43.99 29.54 68.60 2.03 46.01 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 21 C 0.06 2.62 6.45 86.64 0.56 3.18 16 22 C 0.05 1.23 5.41 86.31 0.47 1.70 16 23 C 0.06 1.21 5.62 86.31 0.49 1.69 16 24 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.07 0.89 8.13 -2.39 -0.02 0.87 16 26 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.09 1.57 8.07 -2.38 -0.02 1.55 16 30 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 2.18 8.03 -2.39 -0.02 2.16 16 32 H 0.03 0.79 7.47 -2.39 -0.02 0.77 16 33 H 0.02 0.79 6.20 -2.39 -0.01 0.77 16 34 H 0.08 2.35 8.03 -2.39 -0.02 2.33 16 35 H 0.03 1.30 7.62 -2.39 -0.02 1.29 16 36 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 37 H 0.04 2.15 8.04 -2.39 -0.02 2.13 16 38 H 0.04 2.35 7.76 -2.38 -0.02 2.33 16 39 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 40 H 0.06 2.80 7.63 -2.39 -0.02 2.79 16 41 H 0.04 1.69 7.55 -2.39 -0.02 1.67 16 42 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.08 1.83 6.34 -2.39 -0.02 1.81 16 44 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.09 1.51 8.13 -2.38 -0.02 1.49 16 Total: -1.00 -60.86 342.46 -4.30 -65.16 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.92 Total: 12.03 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 5.86 Total: -13.06 kcal Atomic # 7 Polarization: -97.05 SS G_CDS: -13.10 Total: -110.15 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -60.86 -4.30 -65.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397576493.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.970 kcal (2) G-P(sol) polarization free energy of solvation -60.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds