Wall clock time and date at job start Mon Mar 30 2020 04:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34773 * 120.00023 * 2 1 4 4 O 1.21589 * 120.00059 * 180.02562 * 3 2 1 5 5 N 1.34775 * 120.00235 * 0.02562 * 3 2 1 6 6 C 1.46503 * 120.00101 * 180.02562 * 5 3 2 7 7 C 1.50696 * 109.47067 * 179.97438 * 6 5 3 8 8 H 1.08006 * 119.99821 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00077 * 179.97438 * 7 6 5 10 10 N 1.31508 * 119.99677 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99992 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46892 * 90.00234 * 11 9 7 13 13 H 1.48497 * 109.47120 * 210.00023 * 11 9 7 14 14 H 1.48497 * 109.47276 * 330.00299 * 11 9 7 15 15 C 1.46504 * 119.99686 * 180.02562 * 2 1 3 16 16 H 1.08999 * 110.28475 * 179.32676 * 15 2 1 17 17 C 1.54256 * 110.32258 * 301.45223 * 15 2 1 18 18 C 1.54380 * 105.05847 * 118.89801 * 17 15 2 19 19 N 1.48561 * 104.59676 * 23.85390 * 18 17 15 20 20 C 1.46900 * 110.99787 * 200.96141 * 19 18 17 21 21 C 1.53000 * 117.49578 * 257.56749 * 20 19 18 22 22 C 1.53006 * 117.49485 * 188.91037 * 20 19 18 23 23 C 1.48562 * 104.21611 * 320.51457 * 19 18 17 24 24 H 1.08999 * 109.47003 * 89.99951 * 1 2 3 25 25 H 1.08995 * 109.47273 * 209.99722 * 1 2 3 26 26 H 1.09000 * 109.47043 * 330.00236 * 1 2 3 27 27 H 0.97006 * 119.99965 * 359.97438 * 5 3 2 28 28 H 1.08997 * 109.47401 * 59.99456 * 6 5 3 29 29 H 1.09003 * 109.46695 * 299.99379 * 6 5 3 30 30 H 0.96999 * 120.00271 * 359.97438 * 10 9 7 31 31 H 1.09001 * 110.32648 * 237.79147 * 17 15 2 32 32 H 1.09001 * 110.32759 * 0.02562 * 17 15 2 33 33 H 1.09002 * 110.41119 * 142.63160 * 18 17 15 34 34 H 1.09001 * 110.41612 * 264.95231 * 18 17 15 35 35 H 1.08996 * 115.55360 * 43.24068 * 20 19 18 36 36 H 1.09002 * 117.49933 * 0.02562 * 21 20 19 37 37 H 1.09006 * 117.49966 * 145.02353 * 21 20 19 38 38 H 1.08994 * 117.49678 * 214.97618 * 22 20 19 39 39 H 1.08999 * 117.49881 * 359.97438 * 22 20 19 40 40 H 1.08996 * 110.41531 * 280.70469 * 23 19 18 41 41 H 1.09008 * 110.40677 * 158.26379 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3548 1.1672 -0.0005 5 7 1.4651 2.3344 0.0005 6 6 2.1977 3.6031 0.0000 7 6 1.2184 4.7485 0.0001 8 1 0.1565 4.5512 0.0001 9 6 1.6780 6.0485 0.0001 10 7 2.9710 6.2887 -0.0004 11 14 0.4641 7.4683 -0.0004 12 1 0.1420 7.8447 1.3995 13 1 1.0643 8.6324 -0.7003 14 1 -0.7789 7.0566 -0.7008 15 6 2.1975 -1.2688 -0.0006 16 1 3.2718 -1.0850 -0.0125 17 6 1.8117 -2.1107 1.2331 18 6 1.1979 -3.4057 0.6589 19 7 1.7751 -3.5207 -0.7052 20 6 0.9481 -4.3874 -1.5553 21 6 1.4405 -5.8154 -1.7992 22 6 1.5100 -4.7789 -2.9236 23 6 1.7844 -2.1258 -1.2163 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 0.4951 2.3344 0.0005 28 1 2.8237 3.6608 -0.8904 29 1 2.8249 3.6608 0.8896 30 1 3.6013 5.5514 -0.0005 31 1 2.6968 -2.3417 1.8257 32 1 1.0770 -1.5802 1.8388 33 1 1.4844 -4.2641 1.2665 34 1 0.1123 -3.3220 0.6084 35 1 -0.1281 -4.2324 -1.4789 36 1 2.3779 -6.1118 -1.3286 37 1 0.6882 -6.5997 -1.8837 38 1 0.8035 -4.8817 -3.7471 39 1 2.4931 -4.3929 -3.1930 40 1 0.7908 -1.8410 -1.5621 41 1 2.5125 -2.0206 -2.0207 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426432629.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:37 Heat of formation + Delta-G solvation = 7.824930 kcal Electronic energy + Delta-G solvation = -20554.283975 eV Core-core repulsion = 17470.212361 eV Total energy + Delta-G solvation = -3084.071614 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.19556 -38.80475 -36.56033 -34.43027 -34.31297 -32.33238 -29.86339 -28.81406 -26.95292 -26.03784 -23.02492 -22.63695 -22.42435 -20.86620 -20.55948 -19.06707 -18.27594 -16.96572 -16.56647 -16.24842 -15.27536 -15.09840 -14.86359 -14.12898 -13.94475 -13.71911 -13.32376 -13.07491 -12.93224 -12.77692 -12.32071 -12.27402 -12.05879 -11.99622 -11.76920 -11.57709 -11.47939 -10.97501 -10.83514 -10.76870 -10.66124 -10.28633 -10.17700 -9.50087 -8.78799 -8.77008 -8.69240 -8.47383 -7.87287 -6.50476 -4.23586 2.99363 3.37505 3.41092 3.48159 3.56754 3.68520 3.77956 4.40522 4.46264 4.59431 4.64842 4.71057 4.82270 4.85845 5.03916 5.09787 5.23618 5.26297 5.28628 5.29932 5.38776 5.45688 5.53176 5.62809 5.69905 5.72526 5.83630 5.91442 6.02309 6.06240 6.42593 6.73196 6.82911 6.97751 7.27536 7.34355 7.43774 7.81033 8.29704 8.61324 8.78978 9.23151 9.50894 10.89965 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.042312 B = 0.003378 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.586820 B = 8287.852381 C = 8357.368851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.634 5.634 3 C 0.696 3.304 4 O -0.599 6.599 5 N -0.723 5.723 6 C 0.256 3.744 7 C -0.622 4.622 8 H 0.056 0.944 9 C 0.022 3.978 10 N -0.903 5.903 11 Si 1.079 2.921 12 H -0.286 1.286 13 H -0.282 1.282 14 H -0.288 1.288 15 C 0.157 3.843 16 H 0.112 0.888 17 C -0.138 4.138 18 C 0.038 3.962 19 N -0.482 5.482 20 C -0.009 4.009 21 C -0.162 4.162 22 C -0.169 4.169 23 C 0.028 3.972 24 H 0.050 0.950 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.389 0.611 28 H 0.015 0.985 29 H 0.015 0.985 30 H 0.273 0.727 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.051 0.949 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.117 -21.893 -1.408 23.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.373 5.373 3 C 0.397 3.603 4 O -0.478 6.478 5 N -0.376 5.376 6 C 0.134 3.866 7 C -0.660 4.660 8 H 0.074 0.926 9 C -0.183 4.183 10 N -0.537 5.537 11 Si 0.906 3.094 12 H -0.213 1.213 13 H -0.208 1.208 14 H -0.214 1.214 15 C 0.051 3.949 16 H 0.130 0.870 17 C -0.177 4.177 18 C -0.089 4.089 19 N -0.207 5.207 20 C -0.118 4.118 21 C -0.199 4.199 22 C -0.206 4.206 23 C -0.101 4.101 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.223 0.777 28 H 0.033 0.967 29 H 0.033 0.967 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.119 0.881 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.070 0.930 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.779 -20.401 -1.412 21.544 hybrid contribution -1.369 -1.414 -0.040 1.969 sum -8.149 -21.815 -1.452 23.332 Atomic orbital electron populations 1.21604 0.80763 1.02643 1.01292 1.47077 1.05703 1.04743 1.79771 1.16089 0.85496 0.80502 0.78196 1.90856 1.11763 1.86209 1.58942 1.45662 1.09696 1.05245 1.77002 1.19050 0.92619 0.78554 0.96331 1.22076 0.93657 0.92353 1.57950 0.92588 1.25870 0.99271 0.99842 0.93363 1.70715 1.01659 1.36361 1.44986 0.83407 0.74027 0.75095 0.76842 1.21289 1.20774 1.21406 1.21509 0.98714 0.81724 0.92954 0.86964 1.22759 1.01854 0.95023 0.98038 1.23074 0.97047 0.98449 0.90373 1.65191 1.45935 1.07932 1.01595 1.22579 0.94838 0.96639 0.97728 1.23013 1.03355 0.91314 1.02263 1.23010 1.03092 1.03278 0.91229 1.23417 1.01198 0.87392 0.98104 0.93142 0.91511 0.91111 0.77686 0.96726 0.96739 0.91593 0.90152 0.90456 0.89977 0.93819 0.89618 0.88122 0.88864 0.88743 0.88166 0.93032 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.96 8.83 59.85 0.53 1.49 16 2 N -0.63 -10.00 2.79 -178.08 -0.50 -10.50 16 3 C 0.70 14.82 8.28 -86.92 -0.72 14.10 16 4 O -0.60 -15.14 15.70 5.29 0.08 -15.06 16 5 N -0.72 -16.01 5.41 -66.41 -0.36 -16.37 16 6 C 0.26 6.94 4.74 -5.19 -0.02 6.92 16 7 C -0.62 -17.31 9.28 -34.44 -0.32 -17.63 16 8 H 0.06 1.48 7.60 -52.48 -0.40 1.08 16 9 C 0.02 0.64 5.46 -17.82 -0.10 0.54 16 10 N -0.90 -27.58 13.65 55.43 0.76 -26.83 16 11 Si 1.08 24.58 29.90 -169.99 -5.08 19.50 16 12 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 15 C 0.16 2.19 3.46 -66.55 -0.23 1.96 16 16 H 0.11 1.88 6.96 -51.93 -0.36 1.52 16 17 C -0.14 -1.54 6.17 -25.35 -0.16 -1.70 16 18 C 0.04 0.37 6.49 -2.18 -0.01 0.35 16 19 N -0.48 -5.15 5.52 -222.02 -1.22 -6.38 16 20 C -0.01 -0.08 4.90 -67.71 -0.33 -0.41 16 21 C -0.16 -1.27 10.46 -26.69 -0.28 -1.55 16 22 C -0.17 -1.40 10.33 -26.69 -0.28 -1.68 16 23 C 0.03 0.33 5.99 -2.18 -0.01 0.32 16 24 H 0.05 0.56 7.89 -51.93 -0.41 0.15 16 25 H 0.07 0.64 6.83 -51.93 -0.35 0.29 16 26 H 0.07 0.85 6.36 -51.93 -0.33 0.52 16 27 H 0.39 7.51 6.05 -40.82 -0.25 7.27 16 28 H 0.01 0.44 8.01 -51.93 -0.42 0.02 16 29 H 0.01 0.43 8.01 -51.93 -0.42 0.02 16 30 H 0.27 8.49 7.22 -40.82 -0.29 8.19 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.08 0.85 6.97 -51.93 -0.36 0.49 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.04 0.38 7.90 -51.93 -0.41 -0.03 16 35 H 0.09 0.74 8.01 -51.93 -0.42 0.32 16 36 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.60 6.73 -51.93 -0.35 0.25 16 41 H 0.09 1.10 8.14 -51.92 -0.42 0.67 16 LS Contribution 330.24 15.07 4.98 4.98 Total: -1.00 -32.95 330.24 -9.80 -42.75 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -6.52 Total: 5.19 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -1.93 Total: 2.71 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: -1.32 Total: -60.07 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.08 Total: -15.06 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -5.08 Total: 19.50 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.95 -9.80 -42.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426432629.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.574 kcal (2) G-P(sol) polarization free energy of solvation -32.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds