Wall clock time and date at job start Mon Mar 30 2020 04:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34773 * 120.00023 * 2 1 4 4 O 1.21589 * 120.00059 * 180.02562 * 3 2 1 5 5 N 1.34775 * 120.00235 * 0.02562 * 3 2 1 6 6 C 1.46503 * 120.00101 * 180.02562 * 5 3 2 7 7 C 1.50696 * 109.47067 * 179.97438 * 6 5 3 8 8 H 1.08006 * 119.99821 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00077 * 179.97438 * 7 6 5 10 10 N 1.31508 * 119.99677 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99992 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46892 * 90.00234 * 11 9 7 13 13 H 1.48497 * 109.47120 * 210.00023 * 11 9 7 14 14 H 1.48497 * 109.47276 * 330.00299 * 11 9 7 15 15 C 1.46504 * 119.99686 * 180.02562 * 2 1 3 16 16 H 1.08999 * 110.28475 * 179.32676 * 15 2 1 17 17 C 1.54256 * 110.32258 * 301.45223 * 15 2 1 18 18 C 1.54380 * 105.05847 * 118.89801 * 17 15 2 19 19 N 1.48561 * 104.59676 * 23.85390 * 18 17 15 20 20 C 1.46900 * 110.99787 * 200.96141 * 19 18 17 21 21 C 1.53000 * 117.49578 * 257.56749 * 20 19 18 22 22 C 1.53006 * 117.49485 * 188.91037 * 20 19 18 23 23 C 1.48562 * 104.21611 * 320.51457 * 19 18 17 24 24 H 1.08999 * 109.47003 * 89.99951 * 1 2 3 25 25 H 1.08995 * 109.47273 * 209.99722 * 1 2 3 26 26 H 1.09000 * 109.47043 * 330.00236 * 1 2 3 27 27 H 0.97006 * 119.99965 * 359.97438 * 5 3 2 28 28 H 1.08997 * 109.47401 * 59.99456 * 6 5 3 29 29 H 1.09003 * 109.46695 * 299.99379 * 6 5 3 30 30 H 0.96999 * 120.00271 * 359.97438 * 10 9 7 31 31 H 1.09001 * 110.32648 * 237.79147 * 17 15 2 32 32 H 1.09001 * 110.32759 * 0.02562 * 17 15 2 33 33 H 1.09002 * 110.41119 * 142.63160 * 18 17 15 34 34 H 1.09001 * 110.41612 * 264.95231 * 18 17 15 35 35 H 1.08996 * 115.55360 * 43.24068 * 20 19 18 36 36 H 1.09002 * 117.49933 * 0.02562 * 21 20 19 37 37 H 1.09006 * 117.49966 * 145.02353 * 21 20 19 38 38 H 1.08994 * 117.49678 * 214.97618 * 22 20 19 39 39 H 1.08999 * 117.49881 * 359.97438 * 22 20 19 40 40 H 1.08996 * 110.41531 * 280.70469 * 23 19 18 41 41 H 1.09008 * 110.40677 * 158.26379 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3548 1.1672 -0.0005 5 7 1.4651 2.3344 0.0005 6 6 2.1977 3.6031 0.0000 7 6 1.2184 4.7485 0.0001 8 1 0.1565 4.5512 0.0001 9 6 1.6780 6.0485 0.0001 10 7 2.9710 6.2887 -0.0004 11 14 0.4641 7.4683 -0.0004 12 1 0.1420 7.8447 1.3995 13 1 1.0643 8.6324 -0.7003 14 1 -0.7789 7.0566 -0.7008 15 6 2.1975 -1.2688 -0.0006 16 1 3.2718 -1.0850 -0.0125 17 6 1.8117 -2.1107 1.2331 18 6 1.1979 -3.4057 0.6589 19 7 1.7751 -3.5207 -0.7052 20 6 0.9481 -4.3874 -1.5553 21 6 1.4405 -5.8154 -1.7992 22 6 1.5100 -4.7789 -2.9236 23 6 1.7844 -2.1258 -1.2163 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 0.4951 2.3344 0.0005 28 1 2.8237 3.6608 -0.8904 29 1 2.8249 3.6608 0.8896 30 1 3.6013 5.5514 -0.0005 31 1 2.6968 -2.3417 1.8257 32 1 1.0770 -1.5802 1.8388 33 1 1.4844 -4.2641 1.2665 34 1 0.1123 -3.3220 0.6084 35 1 -0.1281 -4.2324 -1.4789 36 1 2.3779 -6.1118 -1.3286 37 1 0.6882 -6.5997 -1.8837 38 1 0.8035 -4.8817 -3.7471 39 1 2.4931 -4.3929 -3.1930 40 1 0.7908 -1.8410 -1.5621 41 1 2.5125 -2.0206 -2.0207 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426432629.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:36 Heat of formation + Delta-G solvation = -15.856803 kcal Electronic energy + Delta-G solvation = -20555.310892 eV Core-core repulsion = 17470.212361 eV Total energy + Delta-G solvation = -3085.098531 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.54800 -39.98423 -37.56045 -36.44727 -35.58121 -34.28639 -30.84698 -29.87651 -28.67257 -27.49184 -24.95177 -23.46487 -23.28426 -22.11525 -21.42002 -20.61223 -19.81788 -18.56338 -17.86400 -17.41533 -16.79208 -16.30356 -15.82010 -15.62366 -15.23252 -15.21636 -14.85092 -14.51395 -14.35151 -13.94860 -13.69243 -13.61911 -13.43529 -13.02041 -12.98313 -12.70183 -12.55382 -12.37665 -12.32671 -11.89054 -11.85856 -11.33382 -11.29196 -10.99222 -10.92467 -10.77672 -10.17451 -9.58548 -9.51395 -8.80382 -6.55631 1.54573 1.60521 1.65630 1.83003 2.06292 2.54809 2.77885 2.88783 3.08262 3.11397 3.53387 3.72144 3.94964 4.02149 4.06700 4.11427 4.27698 4.30789 4.34729 4.49253 4.54342 4.66615 4.72649 4.77709 4.80661 4.83476 4.95332 4.96104 4.98401 5.06428 5.13266 5.30649 5.36343 5.43950 5.50754 5.77988 5.94241 6.08157 6.09206 6.33095 7.02183 7.28351 7.55687 8.59222 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.042312 B = 0.003378 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.586820 B = 8287.852381 C = 8357.368851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.621 5.621 3 C 0.691 3.309 4 O -0.648 6.648 5 N -0.718 5.718 6 C 0.272 3.728 7 C -0.628 4.628 8 H 0.076 0.924 9 C -0.033 4.033 10 N -0.930 5.930 11 Si 1.134 2.866 12 H -0.270 1.270 13 H -0.285 1.285 14 H -0.259 1.259 15 C 0.149 3.851 16 H 0.074 0.926 17 C -0.130 4.130 18 C 0.046 3.954 19 N -0.494 5.494 20 C -0.019 4.019 21 C -0.151 4.151 22 C -0.173 4.173 23 C 0.039 3.961 24 H 0.066 0.934 25 H 0.099 0.901 26 H 0.072 0.928 27 H 0.405 0.595 28 H -0.020 1.020 29 H -0.019 1.019 30 H 0.254 0.746 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.607 -23.315 -1.305 26.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.358 5.358 3 C 0.392 3.608 4 O -0.531 6.531 5 N -0.373 5.373 6 C 0.148 3.852 7 C -0.665 4.665 8 H 0.094 0.906 9 C -0.231 4.231 10 N -0.566 5.566 11 Si 0.953 3.047 12 H -0.195 1.195 13 H -0.211 1.211 14 H -0.184 1.184 15 C 0.044 3.956 16 H 0.093 0.907 17 C -0.169 4.169 18 C -0.081 4.081 19 N -0.218 5.218 20 C -0.128 4.128 21 C -0.188 4.188 22 C -0.211 4.211 23 C -0.089 4.089 24 H 0.084 0.916 25 H 0.118 0.882 26 H 0.090 0.910 27 H 0.242 0.758 28 H -0.002 1.002 29 H -0.002 1.002 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.080 0.920 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.330 -21.919 -1.306 24.267 hybrid contribution -0.243 -1.109 -0.081 1.138 sum -10.574 -23.028 -1.387 25.377 Atomic orbital electron populations 1.21918 0.77690 1.04367 1.02887 1.47065 1.07491 1.03312 1.77895 1.16292 0.85010 0.81617 0.77889 1.90821 1.14208 1.87120 1.60907 1.45276 1.10216 1.04147 1.77626 1.18544 0.92364 0.81105 0.93166 1.22414 0.94557 0.92512 1.57040 0.90605 1.27687 0.99972 1.03526 0.91917 1.70865 1.02758 1.35532 1.47413 0.82751 0.72527 0.71482 0.77977 1.19536 1.21069 1.18362 1.21620 0.96705 0.81447 0.95843 0.90737 1.22699 1.02121 0.95457 0.96648 1.23078 0.97850 0.97638 0.89584 1.65173 1.47242 1.06973 1.02428 1.22699 0.95195 0.97079 0.97832 1.23064 1.03460 0.91132 1.01188 1.23050 1.02743 1.03608 0.91659 1.23199 1.01072 0.88138 0.96534 0.91558 0.88220 0.90976 0.75770 1.00214 1.00161 0.93676 0.90514 0.89672 0.88725 0.91974 0.88350 0.88870 0.86844 0.87293 0.89629 0.92013 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.54 8.83 127.77 1.13 2.66 16 2 N -0.62 -19.22 2.79 -835.58 -2.33 -21.55 16 3 C 0.69 30.22 8.28 179.06 1.48 31.71 16 4 O -0.65 -34.69 15.70 -4.00 -0.06 -34.76 16 5 N -0.72 -32.25 5.41 -482.30 -2.61 -34.87 16 6 C 0.27 15.35 4.74 85.63 0.41 15.76 16 7 C -0.63 -35.00 9.28 25.60 0.24 -34.76 16 8 H 0.08 3.86 7.60 -2.91 -0.02 3.84 16 9 C -0.03 -1.86 5.46 84.66 0.46 -1.39 16 10 N -0.93 -58.43 13.65 21.45 0.29 -58.14 16 11 Si 1.13 48.18 29.90 68.60 2.05 50.24 16 12 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 13 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 14 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 15 C 0.15 4.15 3.46 45.88 0.16 4.30 16 16 H 0.07 2.66 6.96 -2.39 -0.02 2.64 16 17 C -0.13 -2.71 6.17 31.49 0.19 -2.52 16 18 C 0.05 0.74 6.49 86.45 0.56 1.30 16 19 N -0.49 -9.63 5.52 -856.33 -4.72 -14.35 16 20 C -0.02 -0.30 4.90 44.92 0.22 -0.08 16 21 C -0.15 -1.98 10.46 30.62 0.32 -1.66 16 22 C -0.17 -2.56 10.33 30.62 0.32 -2.25 16 23 C 0.04 0.91 5.99 86.45 0.52 1.43 16 24 H 0.07 1.24 7.89 -2.39 -0.02 1.22 16 25 H 0.10 1.48 6.83 -2.39 -0.02 1.47 16 26 H 0.07 1.53 6.36 -2.39 -0.02 1.51 16 27 H 0.40 15.25 6.05 -92.70 -0.56 14.69 16 28 H -0.02 -1.25 8.01 -2.39 -0.02 -1.27 16 29 H -0.02 -1.22 8.01 -2.39 -0.02 -1.24 16 30 H 0.25 16.63 7.22 -92.71 -0.67 15.96 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.08 1.65 6.97 -2.39 -0.02 1.64 16 33 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.06 0.81 7.90 -2.39 -0.02 0.79 16 35 H 0.10 1.32 8.01 -2.39 -0.02 1.30 16 36 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.11 1.04 8.14 -2.38 -0.02 1.03 16 38 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.06 1.30 6.73 -2.39 -0.02 1.28 16 41 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 Total: -1.00 -74.94 330.24 -0.82 -75.77 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 0.56 Total: 23.15 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: 6.01 Total: 14.51 kcal Atomic # 7 Polarization: -119.53 SS G_CDS: -9.38 Total: -128.90 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -0.06 Total: -34.76 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 2.05 Total: 50.24 kcal Total: -74.94 -0.82 -75.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426432629.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.911 kcal (2) G-P(sol) polarization free energy of solvation -74.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds