Wall clock time and date at job start Mon Mar 30 2020 04:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48653 * 110.99807 * 2 1 4 4 C 1.54632 * 104.63095 * 201.48214 * 3 2 1 5 5 C 1.53266 * 104.68995 * 23.68442 * 4 3 2 6 6 C 1.53618 * 111.05922 * 120.40123 * 5 4 3 7 7 C 1.55162 * 102.67048 * 142.58253 * 6 5 4 8 8 N 1.48633 * 103.35647 * 323.41790 * 7 6 5 9 9 C 1.46903 * 110.99675 * 159.15995 * 8 7 6 10 10 C 1.50696 * 109.47177 * 52.54825 * 9 8 7 11 11 O 1.21292 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99627 * 179.97438 * 10 9 8 13 13 C 1.37090 * 119.99714 * 180.02562 * 12 10 9 14 14 H 1.07999 * 120.00232 * 0.02562 * 13 12 10 15 15 C 1.38955 * 119.99992 * 180.02562 * 13 12 10 16 16 N 1.31413 * 120.00236 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99845 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47174 * 270.00316 * 17 15 13 19 19 H 1.48501 * 109.47062 * 30.00267 * 17 15 13 20 20 H 1.48504 * 109.46913 * 150.00066 * 17 15 13 21 21 C 1.48177 * 105.85997 * 38.61711 * 8 7 6 22 22 C 1.48794 * 110.99697 * 244.39374 * 2 1 3 23 23 H 1.08998 * 109.47501 * 60.12542 * 1 2 3 24 24 H 1.09000 * 109.46938 * 180.12841 * 1 2 3 25 25 H 1.09001 * 109.46668 * 300.11850 * 1 2 3 26 26 H 1.09001 * 110.40365 * 82.68891 * 3 2 1 27 27 H 1.09001 * 110.40012 * 320.26760 * 3 2 1 28 28 H 1.08996 * 110.39493 * 264.87958 * 4 3 2 29 29 H 1.09006 * 110.49058 * 142.53767 * 4 3 2 30 30 H 1.09002 * 110.76951 * 260.87831 * 6 5 4 31 31 H 1.09000 * 110.76862 * 24.10046 * 6 5 4 32 32 H 1.08995 * 110.64135 * 204.95307 * 7 6 5 33 33 H 1.09003 * 110.64245 * 81.87971 * 7 6 5 34 34 H 1.09005 * 109.46883 * 292.54995 * 9 8 7 35 35 H 1.09002 * 109.46817 * 172.55445 * 9 8 7 36 36 H 0.96999 * 120.00048 * 0.02562 * 12 10 9 37 37 H 0.97001 * 119.99781 * 179.97438 * 16 15 13 38 38 H 1.09002 * 110.01816 * 94.18158 * 21 8 7 39 39 H 1.09004 * 110.01554 * 215.56607 * 21 8 7 40 40 H 1.08995 * 110.45889 * 39.49731 * 22 2 1 41 41 H 1.09004 * 110.45494 * 276.93020 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0017 1.3878 0.0000 4 6 3.4415 1.2536 -0.5479 5 6 3.4269 -0.0428 -1.3654 6 6 3.7979 0.2252 -2.8318 7 6 4.6436 -1.0219 -3.2023 8 7 5.4001 -1.3065 -1.9550 9 6 5.8701 -2.6981 -1.9304 10 6 6.6223 -2.9969 -3.2015 11 8 6.7545 -2.1352 -4.0448 12 7 7.1492 -4.2214 -3.4008 13 6 7.8340 -4.4930 -4.5569 14 1 7.9517 -3.7257 -5.3078 15 6 8.3767 -5.7555 -4.7627 16 7 9.0327 -6.0161 -5.8712 17 14 8.1738 -7.0824 -3.4636 18 1 9.3115 -7.0209 -2.5112 19 1 6.9013 -6.8657 -2.7293 20 1 8.1471 -8.4154 -4.1176 21 6 4.4585 -1.0441 -0.8414 22 6 2.0022 -0.6004 -1.2527 23 1 -0.3634 0.5119 -0.8911 24 1 -0.3633 -1.0277 0.0023 25 1 -0.3633 0.5157 0.8890 26 1 2.0165 1.7892 1.0133 27 1 1.4044 2.0241 -0.6530 28 1 4.1546 1.1771 0.2728 29 1 3.6876 2.1023 -1.1861 30 1 2.9036 0.2839 -3.4522 31 1 4.3887 1.1368 -2.9207 32 1 5.3253 -0.7942 -4.0217 33 1 3.9979 -1.8614 -3.4601 34 1 5.0148 -3.3690 -1.8481 35 1 6.5297 -2.8438 -1.0749 36 1 7.0438 -4.9104 -2.7262 37 1 9.4119 -6.8973 -6.0146 38 1 3.9637 -1.9692 -0.5453 39 1 4.9938 -0.6187 0.0075 40 1 1.4030 -0.2904 -2.1088 41 1 2.0236 -1.6874 -1.1751 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429038353.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:50 Heat of formation + Delta-G solvation = -9.275260 kcal Electronic energy + Delta-G solvation = -20863.307824 eV Core-core repulsion = 17778.494690 eV Total energy + Delta-G solvation = -3084.813134 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.36108 -38.53342 -36.74358 -34.01194 -32.76982 -31.67556 -30.35312 -28.82438 -27.51380 -26.14941 -24.30102 -22.91844 -21.48264 -21.20495 -19.50074 -19.14871 -18.17669 -15.98637 -15.94315 -15.67175 -15.37129 -14.83891 -14.72111 -14.35724 -14.22292 -13.63877 -13.45646 -13.25605 -12.76988 -12.56301 -12.33605 -12.22779 -12.11161 -11.72911 -11.68872 -11.45034 -11.39300 -11.23353 -10.99492 -10.65403 -10.58110 -10.48317 -10.40961 -9.96823 -9.53787 -8.74030 -8.43625 -8.18150 -7.94305 -6.30733 -3.81957 3.03515 3.08075 3.15852 3.74515 3.79347 4.09161 4.12437 4.38377 4.44139 4.58916 4.83662 5.00562 5.01771 5.12609 5.16521 5.22558 5.29485 5.42079 5.49491 5.56078 5.58244 5.60943 5.67642 5.72108 5.78768 5.89421 5.93314 5.95600 5.98261 6.07535 6.15686 6.31403 6.57191 6.69889 6.75355 7.23360 7.27529 7.59473 8.15570 8.60691 8.95817 9.43043 9.83979 10.82364 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.038590 B = 0.003871 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.405356 B = 7231.809519 C = 7555.234552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.517 5.517 3 C 0.031 3.969 4 C -0.109 4.109 5 C -0.074 4.074 6 C -0.115 4.115 7 C 0.038 3.962 8 N -0.497 5.497 9 C 0.034 3.966 10 C 0.452 3.548 11 O -0.562 6.562 12 N -0.590 5.590 13 C -0.304 4.304 14 H 0.120 0.880 15 C 0.041 3.959 16 N -0.882 5.882 17 Si 0.879 3.121 18 H -0.270 1.270 19 H -0.270 1.270 20 H -0.277 1.277 21 C 0.053 3.947 22 C 0.044 3.956 23 H 0.027 0.973 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.042 0.958 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.117 0.883 33 H 0.034 0.966 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.371 0.629 37 H 0.273 0.727 38 H 0.045 0.955 39 H 0.079 0.921 40 H 0.047 0.953 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.414 10.245 12.993 22.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.241 5.241 3 C -0.097 4.097 4 C -0.147 4.147 5 C -0.075 4.075 6 C -0.154 4.154 7 C -0.089 4.089 8 N -0.221 5.221 9 C -0.098 4.098 10 C 0.238 3.762 11 O -0.445 6.445 12 N -0.229 5.229 13 C -0.433 4.433 14 H 0.137 0.863 15 C -0.161 4.161 16 N -0.522 5.522 17 Si 0.706 3.294 18 H -0.195 1.195 19 H -0.195 1.195 20 H -0.202 1.202 21 C -0.075 4.075 22 C -0.084 4.084 23 H 0.045 0.955 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.135 0.865 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.203 0.797 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.097 0.903 40 H 0.065 0.935 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.578 10.680 12.805 22.148 hybrid contribution -1.156 -1.462 0.240 1.879 sum -15.733 9.217 13.044 22.420 Atomic orbital electron populations 1.22504 0.88248 1.02163 1.00642 1.65421 1.07918 1.15412 1.35324 1.23212 0.95652 0.89906 1.00954 1.22393 0.96114 0.96729 0.99459 1.21443 0.94184 0.95570 0.96275 1.22678 0.99506 0.99706 0.93462 1.23520 0.95564 0.95152 0.94648 1.64724 1.34089 1.20757 1.02534 1.22131 0.99216 0.89835 0.98636 1.19650 0.84639 0.83249 0.88686 1.90478 1.62047 1.45609 1.46339 1.42203 1.50350 1.10981 1.19353 1.19431 1.28912 0.99242 0.95726 0.86255 1.25038 0.96911 0.97382 0.96815 1.69623 1.35316 1.22687 1.24541 0.86676 0.78704 0.82287 0.81760 1.19548 1.19531 1.20192 1.22975 0.92172 0.97466 0.94922 1.23267 0.94208 1.00125 0.90751 0.95453 0.91308 0.91384 0.90229 0.93981 0.90500 0.90852 0.91532 0.90499 0.86511 0.94717 0.93368 0.89148 0.79679 0.91621 0.93632 0.90269 0.93468 0.90123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.52 60.07 0.57 0.68 16 2 N -0.52 -5.29 5.66 -238.40 -1.35 -6.64 16 3 C 0.03 0.28 6.53 -1.99 -0.01 0.27 16 4 C -0.11 -1.08 6.31 -25.74 -0.16 -1.24 16 5 C -0.07 -0.85 0.89 -153.83 -0.14 -0.99 16 6 C -0.12 -1.47 6.14 -25.27 -0.16 -1.63 16 7 C 0.04 0.64 5.30 -1.72 -0.01 0.63 16 8 N -0.50 -8.29 5.27 -232.04 -1.22 -9.51 16 9 C 0.03 0.59 5.52 -4.98 -0.03 0.56 16 10 C 0.45 10.35 7.49 -10.98 -0.08 10.27 16 11 O -0.56 -14.82 13.10 5.55 0.07 -14.74 16 12 N -0.59 -14.18 5.09 -10.96 -0.06 -14.24 16 13 C -0.30 -8.64 10.16 -14.93 -0.15 -8.79 16 14 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 15 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 16 N -0.88 -25.85 13.96 55.50 0.77 -25.07 16 17 Si 0.88 19.50 27.74 -169.99 -4.71 14.78 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 19 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 C 0.05 0.70 6.06 -3.11 -0.02 0.68 16 22 C 0.04 0.48 5.63 -2.56 -0.01 0.47 16 23 H 0.03 0.21 7.98 -51.93 -0.41 -0.20 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.04 0.36 7.96 -51.93 -0.41 -0.05 16 28 H 0.08 0.76 7.18 -51.93 -0.37 0.39 16 29 H 0.07 0.69 7.38 -51.93 -0.38 0.30 16 30 H 0.07 0.76 7.41 -51.93 -0.39 0.38 16 31 H 0.08 0.97 7.51 -51.93 -0.39 0.58 16 32 H 0.12 2.35 6.00 -51.93 -0.31 2.04 16 33 H 0.03 0.59 8.01 -51.93 -0.42 0.17 16 34 H 0.05 0.76 7.82 -51.93 -0.41 0.36 16 35 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 36 H 0.37 7.87 5.76 -40.82 -0.24 7.63 16 37 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.05 0.59 6.72 -51.93 -0.35 0.24 16 39 H 0.08 1.01 7.16 -51.93 -0.37 0.63 16 40 H 0.05 0.50 7.20 -51.93 -0.37 0.12 16 41 H 0.08 0.92 7.38 -51.93 -0.38 0.54 16 LS Contribution 316.35 15.07 4.77 4.77 Total: -1.00 -31.46 316.35 -8.48 -39.93 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -6.45 Total: 8.76 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -0.30 Total: 1.95 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -1.85 Total: -55.45 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: 0.07 Total: -14.74 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.71 Total: 14.78 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.46 -8.48 -39.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429038353.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.659 kcal (2) G-P(sol) polarization free energy of solvation -31.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds