Wall clock time and date at job start Mon Mar 30 2020 04:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.48653 * 110.99807 * 2 1 4 4 C 1.54632 * 104.63095 * 201.48214 * 3 2 1 5 5 C 1.53266 * 104.68995 * 23.68442 * 4 3 2 6 6 C 1.53618 * 111.05922 * 120.40123 * 5 4 3 7 7 C 1.55162 * 102.67048 * 142.58253 * 6 5 4 8 8 N 1.48633 * 103.35647 * 323.41790 * 7 6 5 9 9 C 1.46903 * 110.99675 * 159.15995 * 8 7 6 10 10 C 1.50696 * 109.47177 * 52.54825 * 9 8 7 11 11 O 1.21292 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99627 * 179.97438 * 10 9 8 13 13 C 1.37090 * 119.99714 * 180.02562 * 12 10 9 14 14 H 1.07999 * 120.00232 * 0.02562 * 13 12 10 15 15 C 1.38955 * 119.99992 * 180.02562 * 13 12 10 16 16 N 1.31413 * 120.00236 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99845 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47174 * 270.00316 * 17 15 13 19 19 H 1.48501 * 109.47062 * 30.00267 * 17 15 13 20 20 H 1.48504 * 109.46913 * 150.00066 * 17 15 13 21 21 C 1.48177 * 105.85997 * 38.61711 * 8 7 6 22 22 C 1.48794 * 110.99697 * 244.39374 * 2 1 3 23 23 H 1.08998 * 109.47501 * 60.12542 * 1 2 3 24 24 H 1.09000 * 109.46938 * 180.12841 * 1 2 3 25 25 H 1.09001 * 109.46668 * 300.11850 * 1 2 3 26 26 H 1.09001 * 110.40365 * 82.68891 * 3 2 1 27 27 H 1.09001 * 110.40012 * 320.26760 * 3 2 1 28 28 H 1.08996 * 110.39493 * 264.87958 * 4 3 2 29 29 H 1.09006 * 110.49058 * 142.53767 * 4 3 2 30 30 H 1.09002 * 110.76951 * 260.87831 * 6 5 4 31 31 H 1.09000 * 110.76862 * 24.10046 * 6 5 4 32 32 H 1.08995 * 110.64135 * 204.95307 * 7 6 5 33 33 H 1.09003 * 110.64245 * 81.87971 * 7 6 5 34 34 H 1.09005 * 109.46883 * 292.54995 * 9 8 7 35 35 H 1.09002 * 109.46817 * 172.55445 * 9 8 7 36 36 H 0.96999 * 120.00048 * 0.02562 * 12 10 9 37 37 H 0.97001 * 119.99781 * 179.97438 * 16 15 13 38 38 H 1.09002 * 110.01816 * 94.18158 * 21 8 7 39 39 H 1.09004 * 110.01554 * 215.56607 * 21 8 7 40 40 H 1.08995 * 110.45889 * 39.49731 * 22 2 1 41 41 H 1.09004 * 110.45494 * 276.93020 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0017 1.3878 0.0000 4 6 3.4415 1.2536 -0.5479 5 6 3.4269 -0.0428 -1.3654 6 6 3.7979 0.2252 -2.8318 7 6 4.6436 -1.0219 -3.2023 8 7 5.4001 -1.3065 -1.9550 9 6 5.8701 -2.6981 -1.9304 10 6 6.6223 -2.9969 -3.2015 11 8 6.7545 -2.1352 -4.0448 12 7 7.1492 -4.2214 -3.4008 13 6 7.8340 -4.4930 -4.5569 14 1 7.9517 -3.7257 -5.3078 15 6 8.3767 -5.7555 -4.7627 16 7 9.0327 -6.0161 -5.8712 17 14 8.1738 -7.0824 -3.4636 18 1 9.3115 -7.0209 -2.5112 19 1 6.9013 -6.8657 -2.7293 20 1 8.1471 -8.4154 -4.1176 21 6 4.4585 -1.0441 -0.8414 22 6 2.0022 -0.6004 -1.2527 23 1 -0.3634 0.5119 -0.8911 24 1 -0.3633 -1.0277 0.0023 25 1 -0.3633 0.5157 0.8890 26 1 2.0165 1.7892 1.0133 27 1 1.4044 2.0241 -0.6530 28 1 4.1546 1.1771 0.2728 29 1 3.6876 2.1023 -1.1861 30 1 2.9036 0.2839 -3.4522 31 1 4.3887 1.1368 -2.9207 32 1 5.3253 -0.7942 -4.0217 33 1 3.9979 -1.8614 -3.4601 34 1 5.0148 -3.3690 -1.8481 35 1 6.5297 -2.8438 -1.0749 36 1 7.0438 -4.9104 -2.7262 37 1 9.4119 -6.8973 -6.0146 38 1 3.9637 -1.9692 -0.5453 39 1 4.9938 -0.6187 0.0075 40 1 1.4030 -0.2904 -2.1088 41 1 2.0236 -1.6874 -1.1751 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429038353.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:49 Heat of formation + Delta-G solvation = -35.053684 kcal Electronic energy + Delta-G solvation = -20864.425660 eV Core-core repulsion = 17778.494690 eV Total energy + Delta-G solvation = -3085.930970 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.41660 -40.17422 -37.92144 -35.99236 -33.93775 -33.67567 -31.34926 -29.79240 -28.87999 -27.20044 -25.94126 -23.95866 -22.53673 -22.20720 -21.32138 -20.36961 -19.94403 -17.71128 -17.00418 -16.84585 -16.46760 -16.39358 -15.89569 -15.69024 -15.34521 -15.09373 -14.66254 -14.50399 -14.31601 -13.99364 -13.71685 -13.40927 -13.14012 -13.05991 -12.79666 -12.50049 -12.43085 -12.37543 -12.23044 -12.20015 -11.98675 -11.64178 -11.51511 -11.46531 -11.35782 -10.27266 -10.20680 -9.46609 -9.28173 -8.42225 -6.02881 1.29583 1.34870 1.43536 1.92939 2.22139 2.68537 3.06788 3.13435 3.21338 3.53968 3.60804 3.68696 4.03989 4.18195 4.25089 4.32908 4.34664 4.38987 4.46185 4.51938 4.55248 4.67867 4.70877 4.76134 4.83177 4.90433 4.97286 5.01587 5.10737 5.14583 5.19751 5.30281 5.32795 5.52533 5.83222 5.90348 5.95147 6.06356 6.10373 6.58589 6.87459 7.37963 7.95023 8.75371 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.038590 B = 0.003871 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.405356 B = 7231.809519 C = 7555.234552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.529 5.529 3 C 0.034 3.966 4 C -0.107 4.107 5 C -0.069 4.069 6 C -0.105 4.105 7 C 0.039 3.961 8 N -0.515 5.515 9 C 0.044 3.956 10 C 0.449 3.551 11 O -0.604 6.604 12 N -0.590 5.590 13 C -0.328 4.328 14 H 0.056 0.944 15 C -0.014 4.014 16 N -0.934 5.934 17 Si 0.964 3.036 18 H -0.256 1.256 19 H -0.233 1.233 20 H -0.274 1.274 21 C 0.056 3.944 22 C 0.047 3.953 23 H 0.030 0.970 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.027 0.973 34 H 0.075 0.925 35 H 0.118 0.882 36 H 0.389 0.611 37 H 0.279 0.721 38 H 0.054 0.946 39 H 0.089 0.911 40 H 0.050 0.950 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.347 9.740 16.479 25.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.253 5.253 3 C -0.094 4.094 4 C -0.145 4.145 5 C -0.071 4.071 6 C -0.143 4.143 7 C -0.089 4.089 8 N -0.240 5.240 9 C -0.087 4.087 10 C 0.237 3.763 11 O -0.488 6.488 12 N -0.232 5.232 13 C -0.457 4.457 14 H 0.075 0.925 15 C -0.213 4.213 16 N -0.575 5.575 17 Si 0.784 3.216 18 H -0.181 1.181 19 H -0.157 1.157 20 H -0.199 1.199 21 C -0.071 4.071 22 C -0.081 4.081 23 H 0.049 0.951 24 H 0.088 0.912 25 H 0.097 0.903 26 H 0.109 0.891 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.045 0.955 34 H 0.093 0.907 35 H 0.136 0.864 36 H 0.224 0.776 37 H 0.089 0.911 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.068 0.932 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.534 10.198 16.315 25.369 hybrid contribution -0.546 -1.177 -0.938 1.600 sum -17.080 9.021 15.378 24.690 Atomic orbital electron populations 1.22547 0.87130 1.02554 1.01359 1.65427 1.09089 1.16025 1.34718 1.23226 0.94896 0.89549 1.01713 1.22383 0.96966 0.95852 0.99327 1.21397 0.94297 0.96185 0.95178 1.22605 0.99259 0.97612 0.94835 1.23311 0.95007 0.96761 0.93814 1.64699 1.35622 1.20238 1.03450 1.22090 0.99837 0.91075 0.95712 1.20815 0.83363 0.82153 0.89933 1.90491 1.63082 1.46848 1.48375 1.42029 1.50530 1.12126 1.18533 1.19006 1.31346 0.98707 0.96614 0.92542 1.26098 0.95523 0.99974 0.99685 1.69802 1.36404 1.23892 1.27372 0.85379 0.80655 0.77349 0.78239 1.18088 1.15669 1.19916 1.23039 0.91972 0.98364 0.93764 1.23189 0.93654 0.99825 0.91408 0.95115 0.91151 0.90261 0.89133 0.93336 0.90277 0.90366 0.90175 0.90566 0.90917 0.95479 0.90717 0.86376 0.77559 0.91118 0.92770 0.89318 0.93187 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.52 127.69 1.22 1.39 16 2 N -0.53 -9.23 5.66 -908.17 -5.14 -14.37 16 3 C 0.03 0.51 6.53 86.52 0.56 1.07 16 4 C -0.11 -1.84 6.31 31.24 0.20 -1.64 16 5 C -0.07 -1.45 0.89 -51.74 -0.05 -1.50 16 6 C -0.10 -2.58 6.14 31.54 0.19 -2.38 16 7 C 0.04 1.30 5.30 86.71 0.46 1.76 16 8 N -0.52 -16.56 5.27 -888.04 -4.68 -21.24 16 9 C 0.04 1.46 5.52 85.56 0.47 1.93 16 10 C 0.45 20.81 7.49 87.65 0.66 21.47 16 11 O -0.60 -33.48 13.10 -3.07 -0.04 -33.52 16 12 N -0.59 -28.41 5.09 -306.98 -1.56 -29.97 16 13 C -0.33 -19.39 10.16 84.04 0.85 -18.54 16 14 H 0.06 3.97 7.39 -2.91 -0.02 3.94 16 15 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 16 N -0.93 -56.72 13.96 21.66 0.30 -56.41 16 17 Si 0.96 39.23 27.74 68.60 1.90 41.13 16 18 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 19 H -0.23 -8.06 6.52 99.48 0.65 -7.41 16 20 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 21 C 0.06 1.33 6.06 86.06 0.52 1.85 16 22 C 0.05 0.91 5.63 86.07 0.48 1.39 16 23 H 0.03 0.40 7.98 -2.39 -0.02 0.38 16 24 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 26 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.05 0.68 7.96 -2.39 -0.02 0.66 16 28 H 0.08 1.34 7.18 -2.39 -0.02 1.32 16 29 H 0.08 1.27 7.38 -2.38 -0.02 1.25 16 30 H 0.08 1.74 7.41 -2.39 -0.02 1.72 16 31 H 0.08 1.88 7.51 -2.39 -0.02 1.86 16 32 H 0.07 3.11 6.00 -2.39 -0.01 3.09 16 33 H 0.03 0.93 8.01 -2.39 -0.02 0.91 16 34 H 0.08 2.11 7.82 -2.38 -0.02 2.09 16 35 H 0.12 3.29 8.14 -2.39 -0.02 3.27 16 36 H 0.39 15.59 5.76 -92.71 -0.53 15.05 16 37 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 38 H 0.05 1.22 6.72 -2.39 -0.02 1.20 16 39 H 0.09 1.97 7.16 -2.39 -0.02 1.96 16 40 H 0.05 0.93 7.20 -2.39 -0.02 0.91 16 41 H 0.07 1.53 7.38 -2.39 -0.02 1.51 16 Total: -1.00 -73.29 316.35 -2.75 -76.04 By element: Atomic # 1 Polarization: 31.44 SS G_CDS: 0.43 Total: 31.87 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 6.04 Total: 6.48 kcal Atomic # 7 Polarization: -110.91 SS G_CDS: -11.08 Total: -122.00 kcal Atomic # 8 Polarization: -33.48 SS G_CDS: -0.04 Total: -33.52 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 1.90 Total: 41.13 kcal Total: -73.29 -2.75 -76.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429038353.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.985 kcal (2) G-P(sol) polarization free energy of solvation -73.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds