Wall clock time and date at job start Mon Mar 30 2020 04:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42903 * 113.99775 * 2 1 4 4 C 1.52997 * 109.46895 * 184.61692 * 3 2 1 5 5 N 1.46900 * 109.46837 * 70.21973 * 4 3 2 6 6 C 1.46903 * 110.99911 * 285.16982 * 5 4 3 7 7 C 1.53010 * 109.46646 * 172.39793 * 6 5 4 8 8 C 1.50709 * 109.46653 * 185.57072 * 7 6 5 9 9 H 1.07998 * 119.99963 * 355.46126 * 8 7 6 10 10 C 1.37874 * 119.99759 * 175.46850 * 8 7 6 11 11 N 1.31509 * 119.99848 * 185.30712 * 10 8 7 12 12 Si 1.86800 * 120.00040 * 5.29735 * 10 8 7 13 13 H 1.48503 * 109.46836 * 94.47034 * 12 10 8 14 14 H 1.48501 * 109.47265 * 214.46783 * 12 10 8 15 15 H 1.48491 * 109.47302 * 334.47174 * 12 10 8 16 16 C 1.46904 * 110.99973 * 161.21873 * 5 4 3 17 17 C 1.50701 * 109.46950 * 293.95413 * 16 5 4 18 18 C 1.35319 * 126.12831 * 94.68906 * 17 16 5 19 19 C 1.39868 * 107.91888 * 179.90368 * 18 17 16 20 20 N 1.30831 * 108.20450 * 0.36084 * 19 18 17 21 21 N 1.34945 * 126.12850 * 274.99726 * 17 16 5 22 22 C 1.46504 * 126.03553 * 359.94331 * 21 17 16 23 23 H 1.08997 * 109.47330 * 304.89398 * 1 2 3 24 24 H 1.09003 * 109.46465 * 64.89205 * 1 2 3 25 25 H 1.09001 * 109.46721 * 184.88822 * 1 2 3 26 26 H 1.09001 * 109.47254 * 64.62029 * 3 2 1 27 27 H 1.09002 * 109.47038 * 304.61987 * 3 2 1 28 28 H 1.08996 * 109.47329 * 310.22220 * 4 3 2 29 29 H 1.08993 * 109.47185 * 190.21878 * 4 3 2 30 30 H 1.08994 * 109.47148 * 292.39117 * 6 5 4 31 31 H 1.08991 * 109.47355 * 52.40125 * 6 5 4 32 32 H 1.08995 * 109.46979 * 305.56643 * 7 6 5 33 33 H 1.08997 * 109.47247 * 65.57298 * 7 6 5 34 34 H 0.97000 * 119.99799 * 179.97438 * 11 10 8 35 35 H 1.08999 * 109.47501 * 173.95338 * 16 5 4 36 36 H 1.09006 * 109.47250 * 53.95196 * 16 5 4 37 37 H 1.08001 * 126.03837 * 0.03328 * 18 17 16 38 38 H 1.08003 * 125.89676 * 180.14359 * 19 18 17 39 39 H 1.09004 * 109.46798 * 89.99884 * 22 21 17 40 40 H 1.08994 * 109.47246 * 209.99747 * 22 21 17 41 41 H 1.09004 * 109.47005 * 330.00047 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5312 1.1866 -0.1161 5 7 3.8846 0.7242 -1.4649 6 6 3.5967 -0.7077 -1.6228 7 6 3.7968 -1.1098 -3.0855 8 6 3.3710 -2.5430 -3.2751 9 1 3.0647 -3.1325 -2.4236 10 6 3.3725 -3.1015 -4.5357 11 7 2.9030 -4.3164 -4.7171 12 14 4.0412 -2.1324 -5.9858 13 1 5.4674 -2.4855 -6.2017 14 1 3.2597 -2.4625 -7.2046 15 1 3.9284 -0.6788 -5.7041 16 6 5.2921 1.0148 -1.7692 17 6 5.4935 2.5068 -1.8374 18 6 5.9133 3.3022 -0.8263 19 6 5.9677 4.6150 -1.3059 20 7 5.5867 4.6091 -2.5574 21 7 5.2820 3.2897 -2.9160 22 6 4.8165 2.8392 -4.2300 23 1 -0.3634 0.5879 0.8429 24 1 -0.3632 0.4361 -0.9306 25 1 -0.3633 -1.0240 0.0876 26 1 1.7557 1.8166 0.9285 27 1 1.6246 1.8749 -0.8457 28 1 3.8970 0.4715 0.6206 29 1 3.9866 2.1601 0.0652 30 1 4.2716 -1.2857 -0.9916 31 1 2.5658 -0.9056 -1.3294 32 1 3.1951 -0.4643 -3.7252 33 1 4.8489 -1.0053 -3.3504 34 1 2.9037 -4.7092 -5.6040 35 1 5.5564 0.5683 -2.7277 36 1 5.9265 0.5979 -0.9869 37 1 6.1641 2.9800 0.1735 38 1 6.2687 5.4840 -0.7396 39 1 3.7274 2.8716 -4.2603 40 1 5.2211 3.4930 -5.0025 41 1 5.1546 1.8177 -4.4047 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000489859009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:12 Heat of formation + Delta-G solvation = 17.053090 kcal Electronic energy + Delta-G solvation = -21151.843656 eV Core-core repulsion = 18068.172205 eV Total energy + Delta-G solvation = -3083.671451 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.17749 -39.51079 -37.87813 -35.15831 -34.12158 -32.73822 -32.05832 -29.95126 -27.59071 -27.23628 -27.10838 -25.25188 -22.81362 -21.98307 -21.71017 -20.52902 -18.99186 -17.79750 -17.50463 -16.97995 -16.57300 -16.41725 -16.10866 -15.60995 -15.46179 -15.03709 -14.79164 -14.71511 -14.59970 -14.18888 -13.60330 -13.58429 -13.31943 -13.18854 -12.96521 -12.78275 -12.47233 -12.41473 -12.14642 -11.75971 -11.73043 -11.53676 -11.48452 -11.32851 -10.71625 -10.44226 -10.20653 -9.45819 -9.22818 -8.26712 -6.29670 0.91660 1.36341 1.38074 1.50380 1.67213 1.93044 2.38171 2.95243 3.05702 3.11537 3.64154 3.76720 4.09087 4.13206 4.32684 4.34206 4.41268 4.42908 4.52246 4.55635 4.56375 4.60621 4.68048 4.71830 4.78603 4.83432 4.87748 4.89804 4.97553 5.07575 5.24943 5.41134 5.56127 5.71597 5.82177 6.04175 6.13038 6.20413 6.34569 6.37006 6.78116 6.82809 7.34081 8.90293 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.013615 B = 0.007076 C = 0.005103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.990334 B = 3956.188981 C = 5485.539095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.410 6.410 3 C 0.068 3.932 4 C 0.052 3.948 5 N -0.536 5.536 6 C 0.078 3.922 7 C 0.004 3.996 8 C -0.527 4.527 9 H 0.028 0.972 10 C 0.006 3.994 11 N -0.952 5.952 12 Si 0.946 3.054 13 H -0.269 1.269 14 H -0.286 1.286 15 H -0.237 1.237 16 C 0.108 3.892 17 C 0.095 3.905 18 C -0.278 4.278 19 C 0.046 3.954 20 N -0.334 5.334 21 N -0.370 5.370 22 C 0.098 3.902 23 H 0.060 0.940 24 H 0.037 0.963 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.046 0.954 28 H 0.042 0.958 29 H 0.107 0.893 30 H 0.014 0.986 31 H 0.087 0.913 32 H 0.021 0.979 33 H 0.015 0.985 34 H 0.265 0.735 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.165 0.835 38 H 0.213 0.787 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.995 17.827 8.546 19.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.330 6.330 3 C -0.008 4.008 4 C -0.076 4.076 5 N -0.261 5.261 6 C -0.049 4.049 7 C -0.034 4.034 8 C -0.566 4.566 9 H 0.047 0.953 10 C -0.191 4.191 11 N -0.593 5.593 12 Si 0.769 3.231 13 H -0.195 1.195 14 H -0.212 1.212 15 H -0.160 1.160 16 C -0.021 4.021 17 C -0.034 4.034 18 C -0.308 4.308 19 C -0.139 4.139 20 N -0.156 5.156 21 N -0.152 5.152 22 C -0.043 4.043 23 H 0.079 0.921 24 H 0.056 0.944 25 H 0.101 0.899 26 H 0.092 0.908 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.125 0.875 30 H 0.032 0.968 31 H 0.105 0.895 32 H 0.040 0.960 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.183 0.817 38 H 0.230 0.770 39 H 0.094 0.906 40 H 0.117 0.883 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.513 18.456 6.897 19.862 hybrid contribution 0.409 -1.194 0.411 1.328 sum 2.921 17.262 7.308 18.971 Atomic orbital electron populations 1.22804 0.80362 1.03056 1.00467 1.87933 1.20876 1.28980 1.95220 1.22613 0.93300 0.84415 1.00520 1.22307 0.94710 1.01630 0.88912 1.62071 1.18706 1.17900 1.27434 1.22098 1.01603 0.84682 0.96469 1.19468 0.95789 0.93831 0.94327 1.21378 1.44110 0.97356 0.93712 0.95334 1.25977 0.95025 0.95911 1.02160 1.70084 1.48010 1.17426 1.23746 0.85724 0.78546 0.80957 0.77843 1.19464 1.21237 1.15980 1.20703 0.90225 0.88219 1.02945 1.21097 0.99729 0.94046 0.88562 1.21514 1.15516 0.92657 1.01075 1.24327 0.98483 0.99124 0.91936 1.77291 1.23555 0.97645 1.17109 1.48624 1.51034 1.04673 1.10914 1.21938 1.00856 1.01063 0.80408 0.92110 0.94386 0.89941 0.90770 0.93550 0.93938 0.87523 0.96819 0.89540 0.96015 0.96673 0.92617 0.90006 0.91158 0.81704 0.77029 0.90618 0.88294 0.89577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.98 16 2 O -0.41 -12.95 7.91 -148.98 -1.18 -14.13 16 3 C 0.07 1.77 6.21 71.98 0.45 2.22 16 4 C 0.05 1.38 5.37 86.30 0.46 1.84 16 5 N -0.54 -17.16 4.45 -900.79 -4.01 -21.17 16 6 C 0.08 3.16 4.66 86.31 0.40 3.56 16 7 C 0.00 0.16 3.73 29.85 0.11 0.28 16 8 C -0.53 -30.51 9.65 25.60 0.25 -30.26 16 9 H 0.03 1.84 7.99 -2.91 -0.02 1.81 16 10 C 0.01 0.34 5.47 84.65 0.46 0.80 16 11 N -0.95 -59.97 13.96 21.45 0.30 -59.67 16 12 Si 0.95 43.53 27.57 68.60 1.89 45.42 16 13 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 14 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 15 H -0.24 -9.79 6.41 99.48 0.64 -9.15 16 16 C 0.11 3.10 4.99 85.56 0.43 3.52 16 17 C 0.09 2.52 5.75 41.41 0.24 2.76 16 18 C -0.28 -6.18 9.23 21.99 0.20 -5.98 16 19 C 0.05 1.01 12.02 85.24 1.02 2.03 16 20 N -0.33 -9.27 12.58 -57.03 -0.72 -9.99 16 21 N -0.37 -10.37 4.01 -356.02 -1.43 -11.80 16 22 C 0.10 2.45 11.27 127.77 1.44 3.89 16 23 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.04 1.14 8.01 -2.39 -0.02 1.13 16 29 H 0.11 2.42 5.73 -2.39 -0.01 2.41 16 30 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.09 3.81 5.25 -2.39 -0.01 3.80 16 32 H 0.02 1.01 7.11 -2.39 -0.02 1.00 16 33 H 0.02 0.67 6.08 -2.39 -0.01 0.65 16 34 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 35 H 0.08 2.55 5.18 -2.39 -0.01 2.54 16 36 H 0.07 1.84 8.12 -2.38 -0.02 1.82 16 37 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 38 H 0.21 2.90 8.06 -2.91 -0.02 2.87 16 39 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 40 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.09 2.17 7.15 -2.39 -0.02 2.15 16 Total: -1.00 -70.85 330.66 2.50 -68.35 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.93 Total: 16.35 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: 6.72 Total: -13.36 kcal Atomic # 7 Polarization: -96.78 SS G_CDS: -5.86 Total: -102.63 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -1.18 Total: -14.13 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.89 Total: 45.42 kcal Total: -70.85 2.50 -68.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000489859009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.400 kcal (2) G-P(sol) polarization free energy of solvation -70.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds