Wall clock time and date at job start Mon Mar 30 2020 04:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 110.99723 * 2 1 4 4 C 1.52993 * 109.47409 * 293.95409 * 3 2 1 5 5 C 1.47200 * 109.47251 * 180.02562 * 4 3 2 6 6 N 4.80843 * 103.18796 * 343.64631 * 2 1 3 7 7 C 1.46895 * 110.99926 * 123.95577 * 2 1 3 8 8 C 1.52999 * 109.47329 * 164.00583 * 7 2 1 9 9 H 1.09006 * 109.47184 * 58.53036 * 8 7 2 10 10 O 1.42905 * 109.46942 * 298.53112 * 8 7 2 11 11 C 1.52997 * 109.47363 * 178.53056 * 8 7 2 12 12 N 1.46899 * 109.47058 * 184.99713 * 11 8 7 13 13 C 1.47479 * 111.00493 * 265.97171 * 12 11 8 14 14 C 1.53514 * 87.93332 * 221.29813 * 13 12 11 15 15 C 1.50704 * 114.34194 * 139.68071 * 14 13 12 16 16 H 1.08000 * 120.00256 * 266.07567 * 15 14 13 17 17 C 1.37878 * 119.99466 * 86.07688 * 15 14 13 18 18 N 1.31513 * 120.00557 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99625 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47156 * 90.00107 * 19 17 15 21 21 H 1.48498 * 109.47240 * 209.99837 * 19 17 15 22 22 H 1.48501 * 109.47424 * 330.00044 * 19 17 15 23 23 C 1.47485 * 110.99857 * 169.99893 * 12 11 8 24 24 H 1.08997 * 109.47246 * 302.02137 * 1 2 3 25 25 H 1.08997 * 109.47016 * 62.02752 * 1 2 3 26 26 H 1.09009 * 109.47116 * 182.02063 * 1 2 3 27 27 H 1.08998 * 109.47331 * 53.95874 * 3 2 1 28 28 H 1.09000 * 109.46828 * 173.95374 * 3 2 1 29 29 H 1.09003 * 109.47059 * 300.00068 * 4 3 2 30 30 H 1.09000 * 109.47154 * 60.00164 * 4 3 2 31 31 H 1.08998 * 109.47466 * 44.00381 * 7 2 1 32 32 H 1.09004 * 109.47274 * 284.00553 * 7 2 1 33 33 H 0.96696 * 114.00312 * 299.99831 * 10 8 7 34 34 H 1.08992 * 109.47261 * 304.99924 * 11 8 7 35 35 H 1.08998 * 109.47141 * 64.99982 * 11 8 7 36 36 H 1.09002 * 113.47105 * 336.06801 * 13 12 11 37 37 H 1.09000 * 113.47824 * 106.53103 * 13 12 11 38 38 H 1.08992 * 114.17061 * 272.37522 * 14 13 12 39 39 H 0.97001 * 120.00389 * 180.02562 * 18 17 15 40 40 H 1.09003 * 113.47713 * 253.47182 * 23 12 11 41 41 H 1.08997 * 113.47378 * 23.88121 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 -1.3182 5 6 2.1594 3.4315 -1.3184 6 7 2.5660 4.4922 -1.3182 7 6 1.9954 -0.7660 1.1375 8 6 3.4727 -1.0841 0.8983 9 1 4.0283 -0.1551 0.7700 10 8 3.6033 -1.8836 -0.2789 11 6 4.0305 -1.8501 2.0995 12 7 5.4751 -2.0510 1.9243 13 6 5.7554 -3.3580 1.3012 14 6 6.9269 -3.5116 2.2813 15 6 7.0882 -4.9004 2.8438 16 1 6.6323 -5.1567 3.7886 17 6 7.8181 -5.8437 2.1520 18 7 8.3730 -5.5318 1.0012 19 14 8.0187 -7.5649 2.8495 20 1 6.9115 -8.4277 2.3646 21 1 9.3179 -8.1307 2.4054 22 1 7.9861 -7.5049 4.3330 23 6 6.0901 -2.5710 3.1598 24 1 -0.3633 0.5449 0.8713 25 1 -0.3633 0.4820 -0.9076 26 1 -0.3634 -1.0271 0.0362 27 1 1.5611 1.9273 0.8309 28 1 3.0797 1.3444 0.1082 29 1 2.0658 1.5015 -2.1491 30 1 0.5471 2.0845 -1.4264 31 1 1.4356 -1.6956 1.2399 32 1 1.8934 -0.1782 2.0498 33 1 3.1332 -2.7275 -0.2354 34 1 3.8510 -1.2787 3.0101 35 1 3.5356 -2.8184 2.1746 36 1 4.9627 -4.0905 1.4537 37 1 6.0676 -3.2844 0.2595 38 1 7.8630 -3.0784 1.9293 39 1 8.8861 -6.1956 0.5144 40 1 6.6861 -1.8304 3.6932 41 1 5.3867 -3.0926 3.8087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594716866.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:31 Heat of formation + Delta-G solvation = 16.993921 kcal Electronic energy + Delta-G solvation = -20149.214123 eV Core-core repulsion = 17065.540106 eV Total energy + Delta-G solvation = -3083.674017 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.36291 -38.42288 -36.90554 -35.88575 -32.70474 -31.94696 -30.77427 -28.41514 -26.38064 -25.18616 -24.70162 -23.18894 -21.37266 -20.88362 -18.58586 -17.97400 -16.76680 -16.17266 -16.07205 -15.88097 -15.17784 -14.77313 -14.61996 -14.58406 -14.07275 -13.81272 -13.55127 -13.45163 -12.86929 -12.70768 -12.45095 -12.13288 -12.10492 -11.87963 -11.70532 -11.51462 -11.31809 -11.14434 -10.99679 -10.66739 -10.60951 -10.27495 -10.08756 -9.42371 -9.16771 -8.91202 -8.57584 -8.42306 -7.95319 -6.04074 -4.08930 2.46534 2.55123 3.28228 3.35718 3.37649 3.38474 3.97165 4.39932 4.55501 4.61967 4.65817 4.71280 5.00629 5.07111 5.13403 5.18898 5.23488 5.30948 5.36712 5.42849 5.55376 5.58439 5.64387 5.65227 5.84858 6.05004 6.29232 6.35774 6.50421 6.67114 6.68820 6.73011 6.79392 7.21124 7.26517 7.31478 7.73778 7.92776 8.01593 8.10810 8.38838 8.94113 9.55851 11.05346 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.033615 B = 0.003273 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.768269 B = 8552.672624 C = 8808.332523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.528 5.528 3 C 0.056 3.944 4 C -0.024 4.024 5 C 0.209 3.791 6 N -0.439 5.439 7 C 0.023 3.977 8 C 0.124 3.876 9 H 0.099 0.901 10 O -0.538 6.538 11 C -0.012 4.012 12 N -0.476 5.476 13 C 0.016 3.984 14 C 0.039 3.961 15 C -0.517 4.517 16 H 0.056 0.944 17 C 0.067 3.933 18 N -0.884 5.884 19 Si 0.890 3.110 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.008 4.008 24 H 0.025 0.975 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.041 0.959 28 H 0.089 0.911 29 H 0.121 0.879 30 H 0.106 0.894 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.366 0.634 34 H 0.066 0.934 35 H 0.042 0.958 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.262 0.738 40 H 0.060 0.940 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.268 9.185 -1.664 19.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.252 5.252 3 C -0.074 4.074 4 C -0.064 4.064 5 C -0.109 4.109 6 N -0.116 5.116 7 C -0.106 4.106 8 C 0.063 3.937 9 H 0.117 0.883 10 O -0.341 6.341 11 C -0.142 4.142 12 N -0.199 5.199 13 C -0.113 4.113 14 C 0.020 3.980 15 C -0.556 4.556 16 H 0.074 0.926 17 C -0.136 4.136 18 N -0.521 5.521 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.137 4.137 24 H 0.043 0.957 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.059 0.941 28 H 0.107 0.893 29 H 0.139 0.861 30 H 0.124 0.876 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.212 0.788 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.822 11.625 -2.750 19.826 hybrid contribution -1.229 -2.169 1.733 3.036 sum -17.051 9.457 -1.017 19.525 Atomic orbital electron populations 1.22511 0.87359 1.02360 1.00772 1.61811 1.07412 1.12330 1.43617 1.22063 1.02006 0.88500 0.94784 1.19270 1.02072 0.83653 1.01403 1.29165 0.93478 0.94932 0.93356 1.81246 1.09187 1.12792 1.08364 1.22924 0.97953 0.98356 0.91333 1.21822 0.91731 0.94897 0.85236 0.88309 1.86643 1.76048 1.33437 1.38009 1.23306 0.93507 0.99463 0.97919 1.68816 1.07891 1.30683 1.12469 1.24000 0.99820 0.86812 1.00670 1.20114 0.93395 0.93630 0.90868 1.21022 1.32870 0.95430 1.06245 0.92575 1.25018 0.94981 0.98721 0.94881 1.69970 1.33760 1.34437 1.13969 0.86635 0.77544 0.84673 0.79371 1.20670 1.21137 1.19902 1.24037 0.98463 0.97786 0.93414 0.95651 0.90957 0.91136 0.94081 0.89273 0.86094 0.87562 0.90262 0.93824 0.78822 0.91583 0.94001 0.93309 0.91430 0.91895 0.92845 0.92182 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.27 60.07 0.56 0.67 16 2 N -0.53 -4.40 4.61 -242.93 -1.12 -5.52 16 3 C 0.06 0.43 4.76 -3.83 -0.02 0.41 16 4 C -0.02 -0.14 5.62 -29.52 -0.17 -0.31 16 5 C 0.21 1.96 15.43 -20.76 -0.32 1.64 16 6 N -0.44 -5.58 18.54 42.15 0.78 -4.80 16 7 C 0.02 0.22 4.63 -3.83 -0.02 0.20 16 8 C 0.12 1.58 3.23 -26.73 -0.09 1.50 16 9 H 0.10 1.38 6.56 -51.93 -0.34 1.04 16 10 O -0.54 -7.86 12.57 -35.23 -0.44 -8.30 16 11 C -0.01 -0.18 4.53 -3.83 -0.02 -0.19 16 12 N -0.48 -9.32 6.31 -244.62 -1.54 -10.86 16 13 C 0.02 0.35 6.66 -7.54 -0.05 0.30 16 14 C 0.04 0.97 3.76 -91.24 -0.34 0.63 16 15 C -0.52 -13.96 8.83 -34.44 -0.30 -14.27 16 16 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 17 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 18 N -0.88 -25.46 13.26 55.43 0.74 -24.72 16 19 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 23 C -0.01 -0.17 7.25 -7.54 -0.05 -0.23 16 24 H 0.02 0.15 8.12 -51.93 -0.42 -0.28 16 25 H 0.07 0.33 6.57 -51.93 -0.34 -0.01 16 26 H 0.07 0.42 7.96 -51.92 -0.41 0.01 16 27 H 0.04 0.30 8.11 -51.93 -0.42 -0.12 16 28 H 0.09 0.83 6.38 -51.93 -0.33 0.49 16 29 H 0.12 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.11 0.40 6.60 -51.93 -0.34 0.06 16 31 H 0.08 0.69 7.87 -51.93 -0.41 0.28 16 32 H 0.04 0.39 8.05 -51.93 -0.42 -0.03 16 33 H 0.37 4.45 9.05 45.56 0.41 4.86 16 34 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 35 H 0.04 0.63 7.30 -51.93 -0.38 0.25 16 36 H 0.05 1.08 7.38 -51.93 -0.38 0.70 16 37 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 38 H 0.06 1.74 8.11 -51.93 -0.42 1.32 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.05 1.03 7.87 -51.93 -0.41 0.62 16 LS Contribution 340.12 15.07 5.13 5.13 Total: -1.00 -31.35 340.12 -8.25 -39.61 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -5.85 Total: 1.55 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: -0.92 Total: -7.91 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: -1.15 Total: -45.90 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -0.44 Total: -8.30 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.35 -8.25 -39.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594716866.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.601 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds