Wall clock time and date at job start Mon Mar 30 2020 04:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 110.99723 * 2 1 4 4 C 1.52993 * 109.47409 * 293.95409 * 3 2 1 5 5 C 1.47200 * 109.47251 * 180.02562 * 4 3 2 6 6 N 4.80843 * 103.18796 * 343.64631 * 2 1 3 7 7 C 1.46895 * 110.99926 * 123.95577 * 2 1 3 8 8 C 1.52999 * 109.47329 * 164.00583 * 7 2 1 9 9 H 1.09006 * 109.47184 * 58.53036 * 8 7 2 10 10 O 1.42905 * 109.46942 * 298.53112 * 8 7 2 11 11 C 1.52997 * 109.47363 * 178.53056 * 8 7 2 12 12 N 1.46899 * 109.47058 * 184.99713 * 11 8 7 13 13 C 1.47479 * 111.00493 * 265.97171 * 12 11 8 14 14 C 1.53514 * 87.93332 * 221.29813 * 13 12 11 15 15 C 1.50704 * 114.34194 * 139.68071 * 14 13 12 16 16 H 1.08000 * 120.00256 * 266.07567 * 15 14 13 17 17 C 1.37878 * 119.99466 * 86.07688 * 15 14 13 18 18 N 1.31513 * 120.00557 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99625 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47156 * 90.00107 * 19 17 15 21 21 H 1.48498 * 109.47240 * 209.99837 * 19 17 15 22 22 H 1.48501 * 109.47424 * 330.00044 * 19 17 15 23 23 C 1.47485 * 110.99857 * 169.99893 * 12 11 8 24 24 H 1.08997 * 109.47246 * 302.02137 * 1 2 3 25 25 H 1.08997 * 109.47016 * 62.02752 * 1 2 3 26 26 H 1.09009 * 109.47116 * 182.02063 * 1 2 3 27 27 H 1.08998 * 109.47331 * 53.95874 * 3 2 1 28 28 H 1.09000 * 109.46828 * 173.95374 * 3 2 1 29 29 H 1.09003 * 109.47059 * 300.00068 * 4 3 2 30 30 H 1.09000 * 109.47154 * 60.00164 * 4 3 2 31 31 H 1.08998 * 109.47466 * 44.00381 * 7 2 1 32 32 H 1.09004 * 109.47274 * 284.00553 * 7 2 1 33 33 H 0.96696 * 114.00312 * 299.99831 * 10 8 7 34 34 H 1.08992 * 109.47261 * 304.99924 * 11 8 7 35 35 H 1.08998 * 109.47141 * 64.99982 * 11 8 7 36 36 H 1.09002 * 113.47105 * 336.06801 * 13 12 11 37 37 H 1.09000 * 113.47824 * 106.53103 * 13 12 11 38 38 H 1.08992 * 114.17061 * 272.37522 * 14 13 12 39 39 H 0.97001 * 120.00389 * 180.02562 * 18 17 15 40 40 H 1.09003 * 113.47713 * 253.47182 * 23 12 11 41 41 H 1.08997 * 113.47378 * 23.88121 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 -1.3182 5 6 2.1594 3.4315 -1.3184 6 7 2.5660 4.4922 -1.3182 7 6 1.9954 -0.7660 1.1375 8 6 3.4727 -1.0841 0.8983 9 1 4.0283 -0.1551 0.7700 10 8 3.6033 -1.8836 -0.2789 11 6 4.0305 -1.8501 2.0995 12 7 5.4751 -2.0510 1.9243 13 6 5.7554 -3.3580 1.3012 14 6 6.9269 -3.5116 2.2813 15 6 7.0882 -4.9004 2.8438 16 1 6.6323 -5.1567 3.7886 17 6 7.8181 -5.8437 2.1520 18 7 8.3730 -5.5318 1.0012 19 14 8.0187 -7.5649 2.8495 20 1 6.9115 -8.4277 2.3646 21 1 9.3179 -8.1307 2.4054 22 1 7.9861 -7.5049 4.3330 23 6 6.0901 -2.5710 3.1598 24 1 -0.3633 0.5449 0.8713 25 1 -0.3633 0.4820 -0.9076 26 1 -0.3634 -1.0271 0.0362 27 1 1.5611 1.9273 0.8309 28 1 3.0797 1.3444 0.1082 29 1 2.0658 1.5015 -2.1491 30 1 0.5471 2.0845 -1.4264 31 1 1.4356 -1.6956 1.2399 32 1 1.8934 -0.1782 2.0498 33 1 3.1332 -2.7275 -0.2354 34 1 3.8510 -1.2787 3.0101 35 1 3.5356 -2.8184 2.1746 36 1 4.9627 -4.0905 1.4537 37 1 6.0676 -3.2844 0.2595 38 1 7.8630 -3.0784 1.9293 39 1 8.8861 -6.1956 0.5144 40 1 6.6861 -1.8304 3.6932 41 1 5.3867 -3.0926 3.8087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594716866.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:31 Heat of formation + Delta-G solvation = -8.622012 kcal Electronic energy + Delta-G solvation = -20150.324913 eV Core-core repulsion = 17065.540106 eV Total energy + Delta-G solvation = -3084.784807 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.80250 -39.35763 -37.82360 -36.82244 -34.69304 -32.76752 -31.92661 -29.65385 -27.54783 -26.46040 -26.29074 -24.46828 -22.53043 -21.71585 -20.40078 -18.77017 -18.52691 -17.22938 -17.02804 -16.71111 -16.49959 -16.33753 -15.69949 -15.52646 -15.43473 -15.16313 -14.55065 -14.27521 -13.86310 -13.82637 -13.48925 -13.37900 -13.25983 -13.14459 -12.84230 -12.71966 -12.60682 -12.38504 -12.25152 -12.06213 -11.85570 -11.74107 -11.51238 -11.12854 -10.83089 -10.64936 -10.42401 -9.58670 -9.17807 -8.12406 -6.24315 1.43899 1.45110 1.55494 1.73012 1.82076 2.44081 2.71474 3.16671 3.19477 3.52230 3.73752 3.97195 4.03532 4.08678 4.21583 4.23621 4.40111 4.46496 4.52060 4.58441 4.63865 4.71770 4.73594 4.80513 4.83567 4.93922 4.99580 5.01888 5.05012 5.22050 5.23698 5.36497 5.57412 5.64838 5.87919 6.05667 6.17559 6.32273 6.47972 6.60642 6.85515 7.04815 7.44219 8.97286 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.033615 B = 0.003273 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.768269 B = 8552.672624 C = 8808.332523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.539 5.539 3 C 0.056 3.944 4 C -0.015 4.015 5 C 0.237 3.763 6 N -0.503 5.503 7 C 0.034 3.966 8 C 0.129 3.871 9 H 0.084 0.916 10 O -0.559 6.559 11 C -0.013 4.013 12 N -0.480 5.480 13 C 0.034 3.966 14 C 0.015 3.985 15 C -0.530 4.530 16 H 0.060 0.940 17 C 0.013 3.987 18 N -0.923 5.923 19 Si 0.958 3.042 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.265 1.265 23 C 0.007 3.993 24 H 0.031 0.969 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.129 0.871 30 H 0.139 0.861 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.375 0.625 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.040 0.960 38 H 0.023 0.977 39 H 0.262 0.738 40 H 0.068 0.932 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.753 8.669 -0.852 21.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.262 5.262 3 C -0.073 4.073 4 C -0.055 4.055 5 C -0.080 4.080 6 N -0.182 5.182 7 C -0.095 4.095 8 C 0.069 3.931 9 H 0.102 0.898 10 O -0.365 6.365 11 C -0.142 4.142 12 N -0.202 5.202 13 C -0.095 4.095 14 C -0.004 4.004 15 C -0.568 4.568 16 H 0.078 0.922 17 C -0.186 4.186 18 N -0.561 5.561 19 Si 0.784 3.216 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.190 1.190 23 C -0.122 4.122 24 H 0.050 0.950 25 H 0.109 0.891 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.147 0.853 30 H 0.157 0.843 31 H 0.109 0.891 32 H 0.071 0.929 33 H 0.222 0.778 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.041 0.959 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.332 11.116 -1.924 21.525 hybrid contribution -0.474 -1.985 1.477 2.519 sum -18.806 9.131 -0.448 20.910 Atomic orbital electron populations 1.22593 0.85539 1.02914 1.02017 1.61756 1.08977 1.12335 1.43170 1.22017 1.00853 0.88641 0.95829 1.19425 1.03870 0.81376 1.00798 1.29717 0.91771 0.95059 0.91413 1.81272 1.11425 1.14961 1.10494 1.22716 0.95286 0.99324 0.92149 1.21753 0.94082 0.93600 0.83693 0.89770 1.86613 1.76691 1.34259 1.38889 1.23417 0.90349 1.00478 0.99994 1.68726 1.11501 1.28617 1.11369 1.23649 0.98775 0.88521 0.98546 1.20081 0.92985 0.93870 0.93486 1.21369 1.32698 0.96416 1.06295 0.92191 1.25855 0.94769 1.02854 0.95138 1.70110 1.34793 1.35787 1.15430 0.85555 0.77473 0.79677 0.78940 1.19797 1.21163 1.18969 1.23850 0.97920 0.96937 0.93447 0.94994 0.89137 0.90963 0.93347 0.91363 0.85303 0.84310 0.89135 0.92851 0.77751 0.89596 0.93395 0.92986 0.94113 0.95862 0.92897 0.91305 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.27 127.69 1.18 1.33 16 2 N -0.54 -7.46 4.61 -922.49 -4.25 -11.72 16 3 C 0.06 0.74 4.76 86.30 0.41 1.15 16 4 C -0.01 -0.14 5.62 28.79 0.16 0.02 16 5 C 0.24 4.17 15.43 89.44 1.38 5.55 16 6 N -0.50 -12.76 18.54 20.01 0.37 -12.39 16 7 C 0.03 0.55 4.63 86.30 0.40 0.95 16 8 C 0.13 3.11 3.23 30.59 0.10 3.21 16 9 H 0.08 2.30 6.56 -2.38 -0.02 2.28 16 10 O -0.56 -15.85 12.57 -148.98 -1.87 -17.72 16 11 C -0.01 -0.36 4.53 86.30 0.39 0.03 16 12 N -0.48 -18.52 6.31 -927.85 -5.85 -24.38 16 13 C 0.03 1.56 6.66 83.58 0.56 2.12 16 14 C 0.01 0.76 3.76 -11.19 -0.04 0.72 16 15 C -0.53 -28.76 8.83 25.60 0.23 -28.54 16 16 H 0.06 3.13 7.81 -2.91 -0.02 3.11 16 17 C 0.01 0.72 5.46 84.66 0.46 1.19 16 18 N -0.92 -54.43 13.26 21.45 0.28 -54.15 16 19 Si 0.96 42.79 29.54 68.60 2.03 44.82 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 21 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 23 C 0.01 0.29 7.25 83.58 0.61 0.90 16 24 H 0.03 0.25 8.12 -2.39 -0.02 0.23 16 25 H 0.09 0.44 6.57 -2.39 -0.02 0.43 16 26 H 0.07 0.62 7.96 -2.38 -0.02 0.60 16 27 H 0.05 0.57 8.11 -2.39 -0.02 0.55 16 28 H 0.07 1.20 6.38 -2.39 -0.02 1.18 16 29 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.14 0.49 6.60 -2.39 -0.02 0.48 16 31 H 0.09 1.28 7.87 -2.39 -0.02 1.26 16 32 H 0.05 0.77 8.05 -2.38 -0.02 0.75 16 33 H 0.38 8.70 9.05 -74.06 -0.67 8.03 16 34 H 0.09 2.11 8.08 -2.39 -0.02 2.09 16 35 H 0.05 1.32 7.30 -2.39 -0.02 1.30 16 36 H 0.05 2.30 7.38 -2.39 -0.02 2.28 16 37 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.02 1.35 8.11 -2.39 -0.02 1.33 16 39 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 40 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.06 2.43 7.87 -2.39 -0.02 2.41 16 Total: -1.00 -69.45 340.12 -3.11 -72.56 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: 0.35 Total: 14.35 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: 5.83 Total: -11.38 kcal Atomic # 7 Polarization: -93.18 SS G_CDS: -9.45 Total: -102.63 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -1.87 Total: -17.72 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -69.45 -3.11 -72.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594716866.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.938 kcal (2) G-P(sol) polarization free energy of solvation -69.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds