Wall clock time and date at job start Mon Mar 30 2020 04:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47010 * 111.03692 * 2 1 4 4 C 1.53102 * 109.29606 * 177.64964 * 3 2 1 5 5 O 1.43016 * 109.25259 * 56.82638 * 4 3 2 6 6 C 1.43009 * 113.73983 * 301.32737 * 5 4 3 7 7 C 1.47018 * 110.99834 * 236.33869 * 2 1 3 8 8 H 1.09007 * 109.50413 * 62.41837 * 7 2 1 9 9 C 1.52993 * 109.50980 * 302.32814 * 7 2 1 10 10 N 1.46900 * 109.47394 * 305.31430 * 9 7 2 11 11 C 1.46902 * 111.00099 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.46860 * 179.97438 * 11 10 9 13 13 H 1.09006 * 109.46953 * 55.00482 * 12 11 10 14 14 C 1.47196 * 109.47733 * 295.00407 * 12 11 10 15 15 N 5.96667 * 117.35619 * 159.05721 * 2 1 3 16 16 C 1.53005 * 109.46732 * 175.00186 * 12 11 10 17 17 C 1.50707 * 109.46959 * 185.00665 * 16 12 11 18 18 H 1.07999 * 119.99763 * 359.72240 * 17 16 12 19 19 C 1.37869 * 119.99905 * 180.02562 * 17 16 12 20 20 N 1.31519 * 120.00118 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00116 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46855 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46806 * 119.99759 * 21 19 17 24 24 H 1.48490 * 109.47387 * 240.00212 * 21 19 17 25 25 H 1.09008 * 109.47205 * 189.66600 * 1 2 3 26 26 H 1.08996 * 109.47354 * 309.66217 * 1 2 3 27 27 H 1.08998 * 109.47141 * 69.66329 * 1 2 3 28 28 H 1.09004 * 109.50650 * 57.69405 * 3 2 1 29 29 H 1.08997 * 109.47092 * 297.58737 * 3 2 1 30 30 H 1.09003 * 109.50454 * 296.89537 * 4 3 2 31 31 H 1.08993 * 109.50614 * 176.76424 * 4 3 2 32 32 H 1.09000 * 109.51058 * 298.74020 * 6 5 4 33 33 H 1.09006 * 109.50771 * 178.60991 * 6 5 4 34 34 H 1.09003 * 109.47261 * 185.30909 * 9 7 2 35 35 H 1.09000 * 109.47017 * 65.31509 * 9 7 2 36 36 H 1.00896 * 110.99886 * 56.04164 * 10 9 7 37 37 H 1.09007 * 109.46450 * 60.00180 * 11 10 9 38 38 H 1.08996 * 109.47110 * 300.00087 * 11 10 9 39 39 H 1.08999 * 109.47229 * 65.00530 * 16 12 11 40 40 H 1.08996 * 109.47073 * 305.00014 * 16 12 11 41 41 H 0.96999 * 119.99649 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9967 1.3721 0.0000 4 6 3.5259 1.3260 0.0593 5 8 4.0175 0.5568 -1.0416 6 6 3.5250 -0.7854 -1.0717 7 6 1.9958 -0.7608 -1.1424 8 1 1.6821 -0.2856 -2.0719 9 6 1.4589 -2.1926 -1.0940 10 7 1.7747 -2.7902 0.2102 11 6 1.2726 -4.1683 0.2933 12 6 1.6203 -4.7560 1.6624 13 1 1.2337 -4.1045 2.4463 14 6 3.0824 -4.8657 1.7925 15 7 4.2108 -4.9493 1.8942 16 6 0.9908 -6.1441 1.7963 17 6 1.2288 -6.6715 3.1878 18 1 1.7783 -6.0781 3.9036 19 6 0.7504 -7.9142 3.5452 20 7 0.0859 -8.6391 2.6719 21 14 1.0460 -8.5683 5.2698 22 1 1.8127 -7.5672 6.0543 23 1 -0.2581 -8.8227 5.9329 24 1 1.8179 -9.8346 5.1935 25 1 -0.3634 -1.0131 0.1726 26 1 -0.3634 0.6559 0.7911 27 1 -0.3633 0.3571 -0.9636 28 1 1.6148 1.9090 0.8684 29 1 1.6829 1.8820 -0.9108 30 1 3.8401 0.8640 0.9952 31 1 3.9230 2.3394 0.0015 32 1 3.8391 -1.3088 -0.1686 33 1 3.9216 -1.2992 -1.9475 34 1 1.9227 -2.7815 -1.8854 35 1 0.3783 -2.1804 -1.2360 36 1 1.4103 -2.2269 0.9638 37 1 1.7349 -4.7711 -0.4885 38 1 0.1907 -4.1694 0.1611 39 1 1.4423 -6.8194 1.0696 40 1 -0.0813 -6.0761 1.6120 41 1 -0.2509 -9.5133 2.9235 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600755244.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:16 Heat of formation + Delta-G solvation = -19.627399 kcal Electronic energy + Delta-G solvation = -20544.483105 eV Core-core repulsion = 17459.221069 eV Total energy + Delta-G solvation = -3085.262036 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.98620 -37.34443 -36.15639 -34.83587 -33.55162 -32.20923 -30.60827 -29.03438 -26.99287 -25.27920 -24.30899 -22.80412 -22.41413 -21.68291 -19.90846 -17.16097 -16.58394 -16.44253 -16.35827 -15.68621 -15.23720 -15.08018 -14.73498 -14.46198 -14.02242 -13.80460 -13.74727 -13.00648 -12.66446 -12.44838 -12.37453 -12.32192 -11.98422 -11.90473 -11.64801 -11.35291 -11.20931 -11.14022 -11.04977 -10.67788 -10.62610 -10.48135 -10.21375 -9.76829 -9.52398 -9.20005 -8.60674 -8.45556 -8.20673 -6.09136 -4.12000 3.28992 3.37317 3.42192 3.52252 3.75692 3.78647 3.88206 4.28082 4.43338 4.66130 4.70362 4.76443 4.94349 4.99490 5.08816 5.14670 5.26364 5.27954 5.29271 5.42259 5.47475 5.53095 5.62623 5.67396 5.68015 5.78185 5.80232 6.00207 6.05380 6.41211 6.51998 6.69581 6.72573 7.02969 7.16543 7.43323 7.54016 7.63235 7.86707 8.24278 8.63094 8.93265 9.53627 11.01835 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.030274 B = 0.003760 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.649740 B = 7444.585114 C = 7652.840688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.533 5.533 3 C 0.021 3.979 4 C 0.063 3.937 5 O -0.391 6.391 6 C 0.072 3.928 7 C 0.053 3.947 8 H 0.049 0.951 9 C 0.067 3.933 10 N -0.685 5.685 11 C 0.065 3.935 12 C 0.011 3.989 13 H 0.098 0.902 14 C 0.256 3.744 15 N -0.480 5.480 16 C 0.031 3.969 17 C -0.525 4.525 18 H 0.057 0.943 19 C 0.062 3.938 20 N -0.892 5.892 21 Si 0.891 3.109 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.284 1.284 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.025 0.975 28 H 0.085 0.915 29 H 0.039 0.961 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.033 0.967 36 H 0.352 0.648 37 H 0.075 0.925 38 H 0.046 0.954 39 H 0.026 0.974 40 H 0.037 0.963 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.476 19.245 -8.283 21.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.258 5.258 3 C -0.108 4.108 4 C -0.014 4.014 5 O -0.309 6.309 6 C -0.005 4.005 7 C -0.056 4.056 8 H 0.067 0.933 9 C -0.063 4.063 10 N -0.318 5.318 11 C -0.065 4.065 12 C -0.011 4.011 13 H 0.116 0.884 14 C -0.061 4.061 15 N -0.157 5.157 16 C -0.008 4.008 17 C -0.563 4.563 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.719 3.281 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.210 1.210 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.044 0.956 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.096 0.904 35 H 0.051 0.949 36 H 0.172 0.828 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.044 0.956 40 H 0.055 0.945 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.060 18.611 -8.044 20.303 hybrid contribution -1.914 -0.030 0.458 1.969 sum -0.855 18.581 -7.587 20.088 Atomic orbital electron populations 1.22442 0.87080 1.02842 1.00329 1.62136 1.07898 1.13195 1.42611 1.22780 0.96745 0.89819 1.01413 1.22632 0.91987 0.96271 0.90520 1.87956 1.70147 1.24543 1.48272 1.22691 0.90994 0.83036 1.03766 1.22414 0.96998 0.94431 0.91775 0.93310 1.21895 0.97959 0.92916 0.93523 1.60440 1.64260 1.03144 1.03979 1.22071 0.98016 0.88884 0.97479 1.19188 0.82820 1.02433 0.96704 0.88400 1.28840 0.94712 0.90858 0.91659 1.80982 1.13543 1.11123 1.10018 1.19172 0.96289 0.87256 0.98033 1.21194 1.35489 1.02272 0.97324 0.92433 1.24953 0.94948 0.96765 0.97324 1.69951 1.37056 1.11781 1.34325 0.86542 0.77955 0.79033 0.84599 1.19648 1.20887 1.20974 0.90893 0.91190 0.95611 0.89664 0.94299 0.92013 0.88815 0.90341 0.88796 0.90367 0.94882 0.82819 0.90665 0.93569 0.95590 0.94518 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 8.84 60.06 0.53 0.71 16 2 N -0.53 -5.23 3.91 -234.57 -0.92 -6.15 16 3 C 0.02 0.18 5.65 -3.71 -0.02 0.16 16 4 C 0.06 0.61 7.01 37.21 0.26 0.87 16 5 O -0.39 -4.76 10.83 -35.23 -0.38 -5.14 16 6 C 0.07 0.84 6.22 37.21 0.23 1.07 16 7 C 0.05 0.54 2.34 -67.60 -0.16 0.38 16 8 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 9 C 0.07 0.71 4.75 -3.83 -0.02 0.69 16 10 N -0.69 -8.69 5.61 -113.78 -0.64 -9.33 16 11 C 0.07 0.94 5.05 -3.83 -0.02 0.92 16 12 C 0.01 0.19 2.35 -93.41 -0.22 -0.03 16 13 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 14 C 0.26 5.36 13.67 -20.76 -0.28 5.08 16 15 N -0.48 -10.95 18.54 42.15 0.78 -10.17 16 16 C 0.03 0.72 4.42 -27.88 -0.12 0.59 16 17 C -0.52 -13.96 8.60 -34.44 -0.30 -14.26 16 18 H 0.06 1.53 7.59 -52.49 -0.40 1.14 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 21 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H 0.07 0.63 6.40 -51.92 -0.33 0.30 16 26 H 0.07 0.52 8.05 -51.93 -0.42 0.10 16 27 H 0.03 0.21 8.12 -51.93 -0.42 -0.22 16 28 H 0.09 0.63 8.09 -51.93 -0.42 0.21 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.08 1.07 7.68 -51.93 -0.40 0.67 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.03 0.33 6.82 -51.93 -0.35 -0.03 16 36 H 0.35 4.42 7.36 -39.29 -0.29 4.13 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 335.35 15.07 5.05 5.05 Total: -1.00 -30.43 335.35 -7.42 -37.85 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.82 Total: -1.41 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: -0.21 Total: -2.21 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: -0.04 Total: -50.44 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.38 Total: -5.14 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.43 -7.42 -37.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600755244.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.218 kcal (2) G-P(sol) polarization free energy of solvation -30.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds