Wall clock time and date at job start Mon Mar 30 2020 04:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47010 * 111.03692 * 2 1 4 4 C 1.53102 * 109.29606 * 177.64964 * 3 2 1 5 5 O 1.43016 * 109.25259 * 56.82638 * 4 3 2 6 6 C 1.43009 * 113.73983 * 301.32737 * 5 4 3 7 7 C 1.47018 * 110.99834 * 236.33869 * 2 1 3 8 8 H 1.09007 * 109.50413 * 62.41837 * 7 2 1 9 9 C 1.52993 * 109.50980 * 302.32814 * 7 2 1 10 10 N 1.46900 * 109.47394 * 305.31430 * 9 7 2 11 11 C 1.46902 * 111.00099 * 179.97438 * 10 9 7 12 12 C 1.52995 * 109.46860 * 179.97438 * 11 10 9 13 13 H 1.09006 * 109.46953 * 55.00482 * 12 11 10 14 14 C 1.47196 * 109.47733 * 295.00407 * 12 11 10 15 15 N 5.96667 * 117.35619 * 159.05721 * 2 1 3 16 16 C 1.53005 * 109.46732 * 175.00186 * 12 11 10 17 17 C 1.50707 * 109.46959 * 185.00665 * 16 12 11 18 18 H 1.07999 * 119.99763 * 359.72240 * 17 16 12 19 19 C 1.37869 * 119.99905 * 180.02562 * 17 16 12 20 20 N 1.31519 * 120.00118 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00116 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46855 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.46806 * 119.99759 * 21 19 17 24 24 H 1.48490 * 109.47387 * 240.00212 * 21 19 17 25 25 H 1.09008 * 109.47205 * 189.66600 * 1 2 3 26 26 H 1.08996 * 109.47354 * 309.66217 * 1 2 3 27 27 H 1.08998 * 109.47141 * 69.66329 * 1 2 3 28 28 H 1.09004 * 109.50650 * 57.69405 * 3 2 1 29 29 H 1.08997 * 109.47092 * 297.58737 * 3 2 1 30 30 H 1.09003 * 109.50454 * 296.89537 * 4 3 2 31 31 H 1.08993 * 109.50614 * 176.76424 * 4 3 2 32 32 H 1.09000 * 109.51058 * 298.74020 * 6 5 4 33 33 H 1.09006 * 109.50771 * 178.60991 * 6 5 4 34 34 H 1.09003 * 109.47261 * 185.30909 * 9 7 2 35 35 H 1.09000 * 109.47017 * 65.31509 * 9 7 2 36 36 H 1.00896 * 110.99886 * 56.04164 * 10 9 7 37 37 H 1.09007 * 109.46450 * 60.00180 * 11 10 9 38 38 H 1.08996 * 109.47110 * 300.00087 * 11 10 9 39 39 H 1.08999 * 109.47229 * 65.00530 * 16 12 11 40 40 H 1.08996 * 109.47073 * 305.00014 * 16 12 11 41 41 H 0.96999 * 119.99649 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9967 1.3721 0.0000 4 6 3.5259 1.3260 0.0593 5 8 4.0175 0.5568 -1.0416 6 6 3.5250 -0.7854 -1.0717 7 6 1.9958 -0.7608 -1.1424 8 1 1.6821 -0.2856 -2.0719 9 6 1.4589 -2.1926 -1.0940 10 7 1.7747 -2.7902 0.2102 11 6 1.2726 -4.1683 0.2933 12 6 1.6203 -4.7560 1.6624 13 1 1.2337 -4.1045 2.4463 14 6 3.0824 -4.8657 1.7925 15 7 4.2108 -4.9493 1.8942 16 6 0.9908 -6.1441 1.7963 17 6 1.2288 -6.6715 3.1878 18 1 1.7783 -6.0781 3.9036 19 6 0.7504 -7.9142 3.5452 20 7 0.0859 -8.6391 2.6719 21 14 1.0460 -8.5683 5.2698 22 1 1.8127 -7.5672 6.0543 23 1 -0.2581 -8.8227 5.9329 24 1 1.8179 -9.8346 5.1935 25 1 -0.3634 -1.0131 0.1726 26 1 -0.3634 0.6559 0.7911 27 1 -0.3633 0.3571 -0.9636 28 1 1.6148 1.9090 0.8684 29 1 1.6829 1.8820 -0.9108 30 1 3.8401 0.8640 0.9952 31 1 3.9230 2.3394 0.0015 32 1 3.8391 -1.3088 -0.1686 33 1 3.9216 -1.2992 -1.9475 34 1 1.9227 -2.7815 -1.8854 35 1 0.3783 -2.1804 -1.2360 36 1 1.4103 -2.2269 0.9638 37 1 1.7349 -4.7711 -0.4885 38 1 0.1907 -4.1694 0.1611 39 1 1.4423 -6.8194 1.0696 40 1 -0.0813 -6.0761 1.6120 41 1 -0.2509 -9.5133 2.9235 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600755244.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:16 Heat of formation + Delta-G solvation = -40.895694 kcal Electronic energy + Delta-G solvation = -20545.405368 eV Core-core repulsion = 17459.221069 eV Total energy + Delta-G solvation = -3086.184299 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.79399 -38.69478 -37.23951 -36.05988 -35.29911 -33.66741 -31.83813 -29.81024 -28.47823 -26.50283 -25.05888 -24.16860 -23.45380 -23.20756 -20.72544 -18.64622 -18.32064 -17.43393 -17.25094 -16.68912 -16.50436 -16.11699 -15.89826 -15.58054 -15.19486 -15.05301 -14.69063 -14.45901 -14.10774 -13.70121 -13.56556 -13.45418 -13.21630 -13.07609 -12.98899 -12.72428 -12.66637 -12.47260 -12.34572 -12.19802 -11.92117 -11.85749 -11.46862 -11.34829 -11.08527 -10.60759 -10.54367 -9.32891 -9.18485 -8.18517 -6.26326 1.39658 1.43044 1.53344 2.11542 2.18418 2.42610 2.79271 2.96554 3.17117 3.28050 3.41499 3.85498 3.96088 4.00815 4.23577 4.26375 4.33472 4.36559 4.45148 4.60829 4.64283 4.68560 4.75446 4.77611 4.81861 4.87770 4.89549 4.95813 5.04531 5.07994 5.13080 5.48950 5.64752 5.81047 5.94334 6.02866 6.11131 6.21368 6.26903 6.64400 6.85524 6.97533 7.42392 8.92577 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.030274 B = 0.003760 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.649740 B = 7444.585114 C = 7652.840688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.546 5.546 3 C 0.024 3.976 4 C 0.058 3.942 5 O -0.408 6.408 6 C 0.073 3.927 7 C 0.061 3.939 8 H 0.054 0.946 9 C 0.071 3.929 10 N -0.691 5.691 11 C 0.079 3.921 12 C 0.021 3.979 13 H 0.116 0.884 14 C 0.266 3.734 15 N -0.516 5.516 16 C 0.038 3.962 17 C -0.537 4.537 18 H 0.053 0.947 19 C 0.012 3.988 20 N -0.924 5.924 21 Si 0.947 3.053 22 H -0.270 1.270 23 H -0.272 1.272 24 H -0.286 1.286 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.030 0.970 28 H 0.101 0.899 29 H 0.041 0.959 30 H 0.051 0.949 31 H 0.114 0.886 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.047 0.953 36 H 0.354 0.646 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.000 1.000 40 H 0.036 0.964 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.391 20.606 -8.150 22.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.272 5.272 3 C -0.104 4.104 4 C -0.019 4.019 5 O -0.327 6.327 6 C -0.004 4.004 7 C -0.048 4.048 8 H 0.072 0.928 9 C -0.059 4.059 10 N -0.325 5.325 11 C -0.051 4.051 12 C 0.000 4.000 13 H 0.134 0.866 14 C -0.050 4.050 15 N -0.194 5.194 16 C -0.001 4.001 17 C -0.575 4.575 18 H 0.071 0.929 19 C -0.187 4.187 20 N -0.564 5.564 21 Si 0.773 3.227 22 H -0.194 1.194 23 H -0.198 1.198 24 H -0.212 1.212 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.049 0.951 28 H 0.120 0.880 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.132 0.868 32 H 0.072 0.928 33 H 0.115 0.885 34 H 0.098 0.902 35 H 0.066 0.934 36 H 0.175 0.825 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.019 0.981 40 H 0.054 0.946 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.139 19.991 -7.910 21.499 hybrid contribution -1.610 -0.412 0.414 1.712 sum -1.471 19.579 -7.496 21.016 Atomic orbital electron populations 1.22453 0.86026 1.03001 1.00999 1.62138 1.08892 1.13784 1.42342 1.22785 0.95875 0.89470 1.02271 1.22814 0.92950 0.96813 0.89327 1.87930 1.70813 1.24741 1.49236 1.22634 0.92172 0.82841 1.02713 1.22283 0.95848 0.94403 0.92310 0.92778 1.21907 0.98843 0.92905 0.92230 1.60362 1.64548 1.02371 1.05204 1.21861 0.99047 0.89650 0.94589 1.19157 0.80737 1.00321 0.99829 0.86621 1.29370 0.95253 0.89845 0.90492 1.80981 1.14792 1.12145 1.11461 1.18995 0.96299 0.89274 0.95547 1.21594 1.34751 1.02371 0.98827 0.92877 1.25695 0.95019 0.97306 1.00684 1.70038 1.38162 1.12209 1.35975 0.85658 0.78139 0.78135 0.80726 1.19421 1.19770 1.21197 0.91137 0.90171 0.95124 0.88031 0.94035 0.93091 0.86788 0.92757 0.88469 0.90219 0.93447 0.82540 0.91207 0.91698 0.98123 0.94581 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 8.84 127.69 1.13 1.45 16 2 N -0.55 -9.62 3.91 -896.05 -3.50 -13.12 16 3 C 0.02 0.37 5.65 86.32 0.49 0.86 16 4 C 0.06 1.04 7.01 72.02 0.50 1.54 16 5 O -0.41 -9.65 10.83 -148.98 -1.61 -11.26 16 6 C 0.07 1.66 6.22 72.02 0.45 2.11 16 7 C 0.06 1.15 2.34 44.92 0.11 1.25 16 8 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 9 C 0.07 1.35 4.75 86.30 0.41 1.76 16 10 N -0.69 -16.38 5.61 -513.90 -2.88 -19.26 16 11 C 0.08 2.13 5.05 86.30 0.44 2.57 16 12 C 0.02 0.76 2.35 -12.60 -0.03 0.73 16 13 H 0.12 3.72 8.14 -2.38 -0.02 3.70 16 14 C 0.27 11.04 13.67 89.44 1.22 12.26 16 15 N -0.52 -23.57 18.54 20.01 0.37 -23.20 16 16 C 0.04 1.72 4.42 29.85 0.13 1.85 16 17 C -0.54 -28.42 8.60 25.60 0.22 -28.20 16 18 H 0.05 2.80 7.59 -2.91 -0.02 2.78 16 19 C 0.01 0.64 5.46 84.65 0.46 1.11 16 20 N -0.92 -52.90 13.29 21.45 0.28 -52.61 16 21 Si 0.95 43.46 29.54 68.60 2.03 45.48 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 25 H 0.07 1.03 6.40 -2.38 -0.02 1.02 16 26 H 0.08 0.97 8.05 -2.39 -0.02 0.95 16 27 H 0.03 0.40 8.12 -2.39 -0.02 0.39 16 28 H 0.10 1.23 8.09 -2.38 -0.02 1.21 16 29 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.49 7.68 -2.39 -0.02 1.47 16 33 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.05 0.80 6.82 -2.39 -0.02 0.78 16 36 H 0.35 8.18 7.36 -89.70 -0.66 7.52 16 37 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 40 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -64.30 335.35 0.56 -63.74 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.35 Total: 10.95 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 5.53 Total: -0.73 kcal Atomic # 7 Polarization: -102.46 SS G_CDS: -5.73 Total: -108.19 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -1.61 Total: -11.26 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -64.30 0.56 -63.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600755244.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.847 kcal (2) G-P(sol) polarization free energy of solvation -64.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds