Wall clock time and date at job start Mon Mar 30 2020 04:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.47020 * 110.99839 * 2 1 4 4 C 1.53098 * 109.25520 * 177.60951 * 3 2 1 5 5 O 1.43014 * 109.25974 * 56.84627 * 4 3 2 6 6 C 1.43009 * 113.73971 * 301.32999 * 5 4 3 7 7 C 1.47013 * 110.99756 * 236.36673 * 2 1 3 8 8 H 1.08995 * 109.50787 * 62.45885 * 7 2 1 9 9 C 1.52997 * 109.53998 * 302.34312 * 7 2 1 10 10 N 1.46899 * 109.47164 * 176.46932 * 9 7 2 11 11 C 1.46897 * 111.00308 * 184.65639 * 10 9 7 12 12 C 1.52999 * 109.47261 * 179.97438 * 11 10 9 13 13 H 1.09004 * 109.47465 * 304.99875 * 12 11 10 14 14 C 1.47206 * 109.47133 * 64.99948 * 12 11 10 15 15 N 7.00361 * 114.79096 * 212.22843 * 2 1 3 16 16 C 1.53002 * 109.47425 * 184.99806 * 12 11 10 17 17 C 1.50701 * 109.47232 * 175.00122 * 16 12 11 18 18 H 1.07995 * 119.99831 * 359.97438 * 17 16 12 19 19 C 1.37880 * 119.99865 * 180.02562 * 17 16 12 20 20 N 1.31513 * 120.00201 * 179.97438 * 19 17 16 21 21 Si 1.86810 * 119.99836 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46784 * 89.99991 * 21 19 17 23 23 H 1.48503 * 109.46739 * 209.99867 * 21 19 17 24 24 H 1.48500 * 109.47049 * 330.00050 * 21 19 17 25 25 H 1.09002 * 109.46679 * 190.06018 * 1 2 3 26 26 H 1.09002 * 109.46696 * 310.05508 * 1 2 3 27 27 H 1.08996 * 109.46769 * 70.05985 * 1 2 3 28 28 H 1.08997 * 109.50634 * 57.67299 * 3 2 1 29 29 H 1.09002 * 109.53781 * 297.56248 * 3 2 1 30 30 H 1.08998 * 109.50224 * 296.90890 * 4 3 2 31 31 H 1.09003 * 109.50123 * 176.78428 * 4 3 2 32 32 H 1.09005 * 109.50776 * 298.73217 * 6 5 4 33 33 H 1.08998 * 109.50700 * 178.60473 * 6 5 4 34 34 H 1.09001 * 109.47388 * 296.46886 * 9 7 2 35 35 H 1.08996 * 109.47065 * 56.46983 * 9 7 2 36 36 H 1.00900 * 110.99875 * 308.60780 * 10 9 7 37 37 H 1.09002 * 109.46991 * 299.99442 * 11 10 9 38 38 H 1.08994 * 109.47333 * 59.99695 * 11 10 9 39 39 H 1.09003 * 109.46869 * 295.00127 * 16 12 11 40 40 H 1.08995 * 109.47083 * 54.99682 * 16 12 11 41 41 H 0.96996 * 120.00237 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9959 1.3726 0.0000 4 6 3.5250 1.3264 0.0603 5 8 4.0175 0.5574 -1.0403 6 6 3.5250 -0.7849 -1.0709 7 6 1.9959 -0.7602 -1.1427 8 1 1.6828 -0.2842 -2.0720 9 6 1.4591 -2.1921 -1.0959 10 7 1.9177 -2.9261 -2.2829 11 6 1.3315 -4.2722 -2.3287 12 6 1.8309 -5.0038 -3.5762 13 1 1.6132 -4.4047 -4.4604 14 6 3.2840 -5.2152 -3.4723 15 7 4.4057 -5.3786 -3.3908 16 6 1.1256 -6.3568 -3.6906 17 6 1.5248 -7.0238 -4.9817 18 1 2.2124 -6.5317 -5.6535 19 6 1.0114 -8.2618 -5.3055 20 7 1.3593 -8.8437 -6.4324 21 14 -0.1785 -9.1125 -4.1436 22 1 -1.5696 -8.7215 -4.4861 23 1 -0.0314 -10.5844 -4.2748 24 1 0.1196 -8.7078 -2.7462 25 1 -0.3633 -1.0119 0.1795 26 1 -0.3633 0.6614 0.7866 27 1 -0.3633 0.3505 -0.9660 28 1 1.6134 1.9092 0.8682 29 1 1.6828 1.8832 -0.9107 30 1 3.8385 0.8644 0.9964 31 1 3.9222 2.3399 0.0029 32 1 3.8386 -1.3083 -0.1677 33 1 3.9222 -1.2984 -1.9464 34 1 1.8260 -2.6886 -0.1976 35 1 0.3694 -2.1713 -1.0802 36 1 1.7119 -2.4132 -3.1271 37 1 1.6270 -4.8277 -1.4386 38 1 0.2449 -4.1943 -2.3642 39 1 1.4139 -6.9890 -2.8507 40 1 0.0462 -6.2061 -3.6781 41 1 0.9984 -9.7147 -6.6601 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600755247.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:24 Heat of formation + Delta-G solvation = -16.463372 kcal Electronic energy + Delta-G solvation = -20245.925747 eV Core-core repulsion = 17160.800914 eV Total energy + Delta-G solvation = -3085.124834 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.02758 -37.52122 -36.22741 -35.13423 -33.63990 -32.26518 -30.90296 -29.06755 -27.40493 -25.47962 -24.39166 -22.92360 -22.24975 -21.40341 -20.36652 -17.24141 -16.92036 -16.61205 -16.50110 -15.82159 -15.23714 -15.21695 -14.70337 -14.60255 -14.04291 -13.85648 -13.78129 -13.26801 -13.01325 -12.70910 -12.49421 -12.29283 -12.20066 -12.08315 -11.88621 -11.44288 -11.33869 -11.27685 -11.17610 -10.78119 -10.71653 -10.42857 -9.96133 -9.84626 -9.76389 -9.34284 -8.75144 -8.63408 -8.44102 -6.11996 -4.12841 3.24205 3.33319 3.34157 3.34556 3.67227 3.71176 3.77555 4.21720 4.36809 4.51437 4.64335 4.68635 4.79771 4.89151 4.92686 5.03528 5.15001 5.19312 5.22727 5.30579 5.36489 5.44658 5.49507 5.57681 5.60678 5.65488 5.77019 5.84558 5.94509 6.17375 6.26844 6.57093 6.61535 6.89151 6.92219 6.97637 7.10439 7.32427 7.62054 8.39125 8.54264 8.91746 9.47713 11.01127 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.032996 B = 0.003581 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.383405 B = 7816.086205 C = 8423.658316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.538 5.538 3 C 0.019 3.981 4 C 0.061 3.939 5 O -0.387 6.387 6 C 0.076 3.924 7 C 0.051 3.949 8 H 0.050 0.950 9 C 0.067 3.933 10 N -0.692 5.692 11 C 0.066 3.934 12 C 0.020 3.980 13 H 0.104 0.896 14 C 0.251 3.749 15 N -0.469 5.469 16 C -0.005 4.005 17 C -0.528 4.528 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.897 5.897 21 Si 0.877 3.123 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.264 1.264 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.027 0.973 28 H 0.085 0.915 29 H 0.042 0.958 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.112 0.888 34 H 0.082 0.918 35 H 0.037 0.963 36 H 0.342 0.658 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.026 0.974 40 H 0.032 0.968 41 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.456 20.219 14.243 25.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.263 5.263 3 C -0.109 4.109 4 C -0.016 4.016 5 O -0.305 6.305 6 C -0.001 4.001 7 C -0.058 4.058 8 H 0.068 0.932 9 C -0.063 4.063 10 N -0.324 5.324 11 C -0.064 4.064 12 C -0.002 4.002 13 H 0.122 0.878 14 C -0.066 4.066 15 N -0.145 5.145 16 C -0.044 4.044 17 C -0.566 4.566 18 H 0.092 0.908 19 C -0.131 4.131 20 N -0.535 5.535 21 Si 0.704 3.296 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.188 1.188 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.046 0.954 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.077 0.923 33 H 0.130 0.870 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.160 0.840 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.044 0.956 40 H 0.050 0.950 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.912 19.440 14.847 24.536 hybrid contribution -2.599 -0.045 -0.388 2.628 sum -4.511 19.396 14.459 24.609 Atomic orbital electron populations 1.22452 0.86983 1.02893 1.00398 1.62177 1.08224 1.13324 1.42603 1.22802 0.96796 0.89698 1.01607 1.22647 0.91965 0.96542 0.90437 1.88017 1.69916 1.24507 1.48078 1.22710 0.90992 0.82799 1.03598 1.22338 0.97002 0.94458 0.91996 0.93193 1.21932 0.97354 0.91993 0.94978 1.60453 1.63055 1.03819 1.05061 1.22085 0.96969 0.88563 0.98744 1.18947 0.82912 1.00295 0.98058 0.87772 1.28701 0.94538 0.91364 0.92020 1.81031 1.13309 1.10472 1.09731 1.19634 0.95625 0.90209 0.98919 1.21029 1.28706 1.03446 1.03448 0.90755 1.24997 0.96177 0.96988 0.94966 1.69903 1.44220 1.16306 1.23047 0.86818 0.81613 0.79029 0.82096 1.20088 1.21286 1.18841 0.90666 0.91355 0.95407 0.89676 0.93993 0.92331 0.88646 0.92332 0.87044 0.89964 0.94462 0.83967 0.90315 0.93244 0.95612 0.94992 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.01 60.07 0.54 0.70 16 2 N -0.54 -4.94 4.80 -234.57 -1.13 -6.06 16 3 C 0.02 0.16 5.65 -3.71 -0.02 0.13 16 4 C 0.06 0.54 7.01 37.21 0.26 0.80 16 5 O -0.39 -4.62 10.83 -35.23 -0.38 -5.00 16 6 C 0.08 0.87 6.13 37.21 0.23 1.09 16 7 C 0.05 0.51 2.14 -67.60 -0.14 0.37 16 8 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 9 C 0.07 0.67 4.92 -3.83 -0.02 0.65 16 10 N -0.69 -7.99 5.70 -113.79 -0.65 -8.64 16 11 C 0.07 0.86 5.04 -3.83 -0.02 0.84 16 12 C 0.02 0.34 2.35 -93.40 -0.22 0.12 16 13 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 14 C 0.25 5.10 13.67 -20.74 -0.28 4.81 16 15 N -0.47 -10.56 18.54 42.17 0.78 -9.78 16 16 C 0.00 -0.10 3.49 -27.88 -0.10 -0.20 16 17 C -0.53 -14.12 9.15 -34.44 -0.32 -14.43 16 18 H 0.07 2.18 7.84 -52.49 -0.41 1.77 16 19 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 20 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 21 Si 0.88 20.49 27.47 -169.99 -4.67 15.82 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 25 H 0.07 0.56 6.57 -51.93 -0.34 0.22 16 26 H 0.07 0.43 8.04 -51.93 -0.42 0.02 16 27 H 0.03 0.21 8.12 -51.93 -0.42 -0.21 16 28 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.11 1.37 7.81 -51.93 -0.41 0.97 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.04 0.35 6.32 -51.93 -0.33 0.02 16 36 H 0.34 3.61 8.67 -39.29 -0.34 3.27 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.03 0.55 7.20 -51.93 -0.37 0.18 16 40 H 0.03 0.62 7.57 -51.93 -0.39 0.23 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 333.86 15.07 5.03 5.03 Total: -1.00 -31.71 333.86 -7.25 -38.96 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -6.82 Total: -0.88 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -0.19 Total: -3.23 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -0.22 Total: -50.70 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.38 Total: -5.00 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.67 Total: 15.82 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.71 -7.25 -38.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600755247.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.493 kcal (2) G-P(sol) polarization free energy of solvation -31.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds