Wall clock time and date at job start Mon Mar 30 2020 04:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.47020 * 110.99839 * 2 1 4 4 C 1.53098 * 109.25520 * 177.60951 * 3 2 1 5 5 O 1.43014 * 109.25974 * 56.84627 * 4 3 2 6 6 C 1.43009 * 113.73971 * 301.32999 * 5 4 3 7 7 C 1.47013 * 110.99756 * 236.36673 * 2 1 3 8 8 H 1.08995 * 109.50787 * 62.45885 * 7 2 1 9 9 C 1.52997 * 109.53998 * 302.34312 * 7 2 1 10 10 N 1.46899 * 109.47164 * 176.46932 * 9 7 2 11 11 C 1.46897 * 111.00308 * 184.65639 * 10 9 7 12 12 C 1.52999 * 109.47261 * 179.97438 * 11 10 9 13 13 H 1.09004 * 109.47465 * 304.99875 * 12 11 10 14 14 C 1.47206 * 109.47133 * 64.99948 * 12 11 10 15 15 N 7.00361 * 114.79096 * 212.22843 * 2 1 3 16 16 C 1.53002 * 109.47425 * 184.99806 * 12 11 10 17 17 C 1.50701 * 109.47232 * 175.00122 * 16 12 11 18 18 H 1.07995 * 119.99831 * 359.97438 * 17 16 12 19 19 C 1.37880 * 119.99865 * 180.02562 * 17 16 12 20 20 N 1.31513 * 120.00201 * 179.97438 * 19 17 16 21 21 Si 1.86810 * 119.99836 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46784 * 89.99991 * 21 19 17 23 23 H 1.48503 * 109.46739 * 209.99867 * 21 19 17 24 24 H 1.48500 * 109.47049 * 330.00050 * 21 19 17 25 25 H 1.09002 * 109.46679 * 190.06018 * 1 2 3 26 26 H 1.09002 * 109.46696 * 310.05508 * 1 2 3 27 27 H 1.08996 * 109.46769 * 70.05985 * 1 2 3 28 28 H 1.08997 * 109.50634 * 57.67299 * 3 2 1 29 29 H 1.09002 * 109.53781 * 297.56248 * 3 2 1 30 30 H 1.08998 * 109.50224 * 296.90890 * 4 3 2 31 31 H 1.09003 * 109.50123 * 176.78428 * 4 3 2 32 32 H 1.09005 * 109.50776 * 298.73217 * 6 5 4 33 33 H 1.08998 * 109.50700 * 178.60473 * 6 5 4 34 34 H 1.09001 * 109.47388 * 296.46886 * 9 7 2 35 35 H 1.08996 * 109.47065 * 56.46983 * 9 7 2 36 36 H 1.00900 * 110.99875 * 308.60780 * 10 9 7 37 37 H 1.09002 * 109.46991 * 299.99442 * 11 10 9 38 38 H 1.08994 * 109.47333 * 59.99695 * 11 10 9 39 39 H 1.09003 * 109.46869 * 295.00127 * 16 12 11 40 40 H 1.08995 * 109.47083 * 54.99682 * 16 12 11 41 41 H 0.96996 * 120.00237 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9959 1.3726 0.0000 4 6 3.5250 1.3264 0.0603 5 8 4.0175 0.5574 -1.0403 6 6 3.5250 -0.7849 -1.0709 7 6 1.9959 -0.7602 -1.1427 8 1 1.6828 -0.2842 -2.0720 9 6 1.4591 -2.1921 -1.0959 10 7 1.9177 -2.9261 -2.2829 11 6 1.3315 -4.2722 -2.3287 12 6 1.8309 -5.0038 -3.5762 13 1 1.6132 -4.4047 -4.4604 14 6 3.2840 -5.2152 -3.4723 15 7 4.4057 -5.3786 -3.3908 16 6 1.1256 -6.3568 -3.6906 17 6 1.5248 -7.0238 -4.9817 18 1 2.2124 -6.5317 -5.6535 19 6 1.0114 -8.2618 -5.3055 20 7 1.3593 -8.8437 -6.4324 21 14 -0.1785 -9.1125 -4.1436 22 1 -1.5696 -8.7215 -4.4861 23 1 -0.0314 -10.5844 -4.2748 24 1 0.1196 -8.7078 -2.7462 25 1 -0.3633 -1.0119 0.1795 26 1 -0.3633 0.6614 0.7866 27 1 -0.3633 0.3505 -0.9660 28 1 1.6134 1.9092 0.8682 29 1 1.6828 1.8832 -0.9107 30 1 3.8385 0.8644 0.9964 31 1 3.9222 2.3399 0.0029 32 1 3.8386 -1.3083 -0.1677 33 1 3.9222 -1.2984 -1.9464 34 1 1.8260 -2.6886 -0.1976 35 1 0.3694 -2.1713 -1.0802 36 1 1.7119 -2.4132 -3.1271 37 1 1.6270 -4.8277 -1.4386 38 1 0.2449 -4.1943 -2.3642 39 1 1.4139 -6.9890 -2.8507 40 1 0.0462 -6.2061 -3.6781 41 1 0.9984 -9.7147 -6.6601 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600755247.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:23 Heat of formation + Delta-G solvation = -40.995707 kcal Electronic energy + Delta-G solvation = -20246.989549 eV Core-core repulsion = 17160.800914 eV Total energy + Delta-G solvation = -3086.188636 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.78687 -38.79140 -37.20767 -36.27720 -35.33513 -33.83171 -32.02657 -29.84568 -28.79176 -26.56141 -25.09641 -24.07046 -23.33605 -22.88357 -21.13541 -18.90666 -18.52945 -17.46353 -17.33665 -16.67516 -16.29251 -16.17972 -15.96466 -15.56338 -15.26805 -15.08663 -14.75721 -14.50975 -14.35489 -13.89886 -13.80141 -13.50590 -13.26111 -13.17127 -13.05240 -12.83504 -12.64771 -12.34642 -12.12612 -12.08537 -12.01516 -11.65385 -11.56369 -11.42303 -11.24754 -10.72190 -10.63210 -9.44120 -9.28676 -8.23799 -6.29474 1.42924 1.46661 1.56682 2.08159 2.15239 2.41954 2.63958 2.91790 3.12589 3.28915 3.40916 3.76080 3.94821 4.00344 4.11290 4.17151 4.26906 4.32269 4.39231 4.59185 4.61876 4.64975 4.70399 4.72100 4.76607 4.81831 4.87508 4.95450 4.96240 5.05107 5.12217 5.25071 5.47263 5.64468 5.87823 5.94695 6.06789 6.19074 6.27309 6.47967 6.78684 6.93714 7.35120 8.93266 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.032996 B = 0.003581 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.383405 B = 7816.086205 C = 8423.658316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.547 5.547 3 C 0.021 3.979 4 C 0.055 3.945 5 O -0.410 6.410 6 C 0.078 3.922 7 C 0.059 3.941 8 H 0.046 0.954 9 C 0.076 3.924 10 N -0.704 5.704 11 C 0.079 3.921 12 C 0.025 3.975 13 H 0.117 0.883 14 C 0.262 3.738 15 N -0.517 5.517 16 C -0.003 4.003 17 C -0.531 4.531 18 H 0.028 0.972 19 C 0.001 3.999 20 N -0.955 5.955 21 Si 0.950 3.050 22 H -0.256 1.256 23 H -0.297 1.297 24 H -0.237 1.237 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.028 0.972 28 H 0.106 0.894 29 H 0.038 0.962 30 H 0.058 0.942 31 H 0.115 0.885 32 H 0.051 0.949 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.349 0.651 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.027 0.973 40 H 0.064 0.936 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.973 21.496 16.646 28.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.273 5.273 3 C -0.107 4.107 4 C -0.022 4.022 5 O -0.329 6.329 6 C 0.001 3.999 7 C -0.050 4.050 8 H 0.063 0.937 9 C -0.053 4.053 10 N -0.336 5.336 11 C -0.051 4.051 12 C 0.003 3.997 13 H 0.134 0.866 14 C -0.054 4.054 15 N -0.194 5.194 16 C -0.042 4.042 17 C -0.569 4.569 18 H 0.047 0.953 19 C -0.195 4.195 20 N -0.596 5.596 21 Si 0.772 3.228 22 H -0.181 1.181 23 H -0.223 1.223 24 H -0.160 1.160 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.046 0.954 28 H 0.125 0.875 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.132 0.868 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.168 0.832 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.045 0.955 40 H 0.082 0.918 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.436 20.760 17.271 27.367 hybrid contribution -1.725 -0.351 -1.189 2.124 sum -6.161 20.409 16.083 26.705 Atomic orbital electron populations 1.22502 0.85759 1.03485 1.00941 1.62196 1.09354 1.13823 1.41909 1.22836 0.96119 0.89345 1.02395 1.22873 0.92776 0.97040 0.89475 1.87978 1.70666 1.24755 1.49484 1.22604 0.92196 0.82704 1.02431 1.22179 0.95809 0.94726 0.92294 0.93653 1.21847 0.98186 0.91475 0.93804 1.60352 1.63627 1.03617 1.06041 1.21918 0.98386 0.88684 0.96077 1.19075 0.80375 0.99223 1.01056 0.86555 1.29468 0.95325 0.90092 0.90535 1.81029 1.14945 1.11868 1.11572 1.19585 0.97679 0.91513 0.95428 1.21425 1.27047 1.03470 1.04993 0.95330 1.26065 0.98603 0.98079 0.96765 1.70093 1.46670 1.17015 1.25843 0.85673 0.79492 0.76857 0.80738 1.18082 1.22341 1.15970 0.90365 0.89983 0.95382 0.87543 0.94336 0.92328 0.86755 0.93116 0.88649 0.90682 0.92758 0.83211 0.90393 0.90292 0.95504 0.91823 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.01 127.69 1.15 1.40 16 2 N -0.55 -8.79 4.80 -896.03 -4.30 -13.09 16 3 C 0.02 0.29 5.65 86.31 0.49 0.78 16 4 C 0.05 0.88 7.01 72.01 0.50 1.39 16 5 O -0.41 -9.60 10.83 -148.98 -1.61 -11.21 16 6 C 0.08 1.74 6.13 72.02 0.44 2.19 16 7 C 0.06 1.09 2.14 44.93 0.10 1.19 16 8 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 9 C 0.08 1.34 4.92 86.30 0.42 1.76 16 10 N -0.70 -14.68 5.70 -513.91 -2.93 -17.61 16 11 C 0.08 1.80 5.04 86.30 0.44 2.23 16 12 C 0.02 0.79 2.35 -12.60 -0.03 0.76 16 13 H 0.12 3.50 8.14 -2.39 -0.02 3.48 16 14 C 0.26 10.58 13.67 89.44 1.22 11.80 16 15 N -0.52 -23.64 18.54 20.01 0.37 -23.27 16 16 C 0.00 -0.12 3.49 29.85 0.10 -0.01 16 17 C -0.53 -28.49 9.15 25.60 0.23 -28.25 16 18 H 0.03 1.74 7.84 -2.91 -0.02 1.72 16 19 C 0.00 0.08 5.47 84.66 0.46 0.54 16 20 N -0.96 -59.18 13.96 21.45 0.30 -58.88 16 21 Si 0.95 41.14 27.47 68.60 1.88 43.02 16 22 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 23 H -0.30 -13.26 7.11 99.48 0.71 -12.56 16 24 H -0.24 -9.15 6.54 99.48 0.65 -8.49 16 25 H 0.08 0.90 6.57 -2.39 -0.02 0.88 16 26 H 0.08 0.77 8.04 -2.39 -0.02 0.75 16 27 H 0.03 0.34 8.12 -2.39 -0.02 0.32 16 28 H 0.11 1.03 8.09 -2.39 -0.02 1.01 16 29 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.10 2.40 7.81 -2.39 -0.02 2.38 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.05 0.80 6.32 -2.39 -0.02 0.78 16 36 H 0.35 6.58 8.67 -89.69 -0.78 5.80 16 37 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.03 1.07 7.20 -2.39 -0.02 1.05 16 40 H 0.06 2.18 7.57 -2.39 -0.02 2.16 16 41 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -70.98 333.86 -0.57 -71.56 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.18 Total: 13.71 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 5.53 Total: -4.23 kcal Atomic # 7 Polarization: -106.29 SS G_CDS: -6.55 Total: -112.84 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -1.61 Total: -11.21 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 1.88 Total: 43.02 kcal Total: -70.98 -0.57 -71.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600755247.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.561 kcal (2) G-P(sol) polarization free energy of solvation -70.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds