Wall clock time and date at job start Mon Mar 30 2020 05:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 110.37221 * 2 1 4 4 C 1.54383 * 110.32099 * 122.17720 * 2 1 3 5 5 N 1.48559 * 104.59506 * 142.75234 * 4 2 1 6 6 C 1.46896 * 111.00030 * 200.96040 * 5 4 2 7 7 C 1.48561 * 104.21842 * 320.51584 * 5 4 2 8 8 C 1.54254 * 110.32608 * 237.81139 * 2 1 3 9 9 H 1.09004 * 110.32381 * 122.20959 * 8 2 1 10 10 N 1.46900 * 110.32342 * 0.10713 * 8 2 1 11 11 C 1.46898 * 110.99962 * 154.99701 * 10 8 2 12 12 C 1.53042 * 109.46033 * 275.06497 * 11 10 8 13 13 C 1.53197 * 109.31274 * 178.61640 * 12 11 10 14 14 N 1.46930 * 108.77670 * 54.63312 * 13 12 11 15 15 C 1.36935 * 120.62803 * 126.37049 * 14 13 12 16 16 H 1.08004 * 119.99966 * 207.70219 * 15 14 13 17 17 C 1.38816 * 120.00045 * 27.69764 * 15 14 13 18 18 N 1.31618 * 119.99935 * 17.35720 * 17 15 14 19 19 Si 1.86801 * 119.99853 * 197.35104 * 17 15 14 20 20 H 1.48499 * 109.46808 * 90.00414 * 19 17 15 21 21 H 1.48501 * 109.46989 * 210.00595 * 19 17 15 22 22 H 1.48496 * 109.47183 * 330.00499 * 19 17 15 23 23 C 1.46922 * 118.73882 * 306.39567 * 14 13 12 24 24 C 1.53047 * 109.45979 * 154.99712 * 11 10 8 25 25 H 1.09001 * 109.47372 * 299.27573 * 1 2 3 26 26 H 1.09001 * 109.47384 * 59.27563 * 1 2 3 27 27 H 1.09000 * 109.47415 * 179.27197 * 1 2 3 28 28 H 1.09001 * 110.41316 * 23.97254 * 4 2 1 29 29 H 1.09005 * 110.51209 * 261.57590 * 4 2 1 30 30 H 1.09005 * 109.47519 * 59.87283 * 6 5 4 31 31 H 1.09003 * 109.47076 * 299.87048 * 6 5 4 32 32 H 1.09003 * 109.47172 * 179.87004 * 6 5 4 33 33 H 1.08999 * 110.41157 * 158.26383 * 7 5 4 34 34 H 1.09000 * 110.41059 * 280.70273 * 7 5 4 35 35 H 1.00901 * 110.99951 * 278.95010 * 10 8 2 36 36 H 1.09001 * 109.46229 * 35.02907 * 11 10 8 37 37 H 1.08997 * 109.49959 * 298.56896 * 12 11 10 38 38 H 1.08997 * 109.49575 * 58.67135 * 12 11 10 39 39 H 1.09007 * 109.58570 * 294.85119 * 13 12 11 40 40 H 1.08991 * 109.58773 * 174.42324 * 13 12 11 41 41 H 0.96998 * 119.99871 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.58932 * 293.81504 * 23 14 13 43 43 H 1.09003 * 109.70003 * 173.46262 * 23 14 13 44 44 H 1.09002 * 109.49754 * 301.33874 * 24 11 10 45 45 H 1.09007 * 109.49516 * 61.40497 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0661 -0.7710 1.2254 5 7 3.2693 -1.4828 0.7227 6 6 3.6067 -2.6216 1.5871 7 6 2.8806 -1.9422 -0.6355 8 6 2.0658 -0.7706 -1.2242 9 1 2.7082 -0.1269 -1.8252 10 7 0.9512 -1.2781 -2.0354 11 6 1.3625 -1.4723 -3.4322 12 6 1.2290 -0.1503 -4.1915 13 6 1.6913 -0.3482 -5.6386 14 7 0.9358 -1.4618 -6.2284 15 6 0.2565 -1.2977 -7.4060 16 1 -0.6167 -1.8983 -7.6139 17 6 0.6901 -0.3592 -8.3324 18 7 1.9120 0.1242 -8.2569 19 14 -0.4604 0.2172 -9.6864 20 1 -1.2244 1.4007 -9.2162 21 1 0.3328 0.5850 -10.8868 22 1 -1.4043 -0.8757 -10.0326 23 6 0.9226 -2.7545 -5.5304 24 6 0.4688 -2.5297 -4.0846 25 1 -0.3634 0.5025 0.8964 26 1 -0.3634 0.5250 -0.8834 27 1 -0.3634 -1.0276 -0.0131 28 1 1.3228 -1.4848 1.5805 29 1 2.3390 -0.0793 2.0224 30 1 2.7700 -3.3198 1.6114 31 1 3.8107 -2.2637 2.5963 32 1 4.4897 -3.1262 1.1950 33 1 3.7670 -2.1309 -1.2412 34 1 2.2648 -2.8393 -0.5717 35 1 0.5798 -2.1316 -1.6458 36 1 2.4000 -1.8051 -3.4624 37 1 0.1873 0.1706 -4.1831 38 1 1.8478 0.6084 -3.7125 39 1 2.7562 -0.5807 -5.6534 40 1 1.5060 0.5618 -6.2091 41 1 2.2151 0.7796 -8.9045 42 1 1.9246 -3.1834 -5.5364 43 1 0.2313 -3.4342 -6.0288 44 1 0.5465 -3.4645 -3.5293 45 1 -0.5658 -2.1867 -4.0767 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610677421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:26 Heat of formation + Delta-G solvation = 27.633564 kcal Electronic energy + Delta-G solvation = -21573.939740 eV Core-core repulsion = 18626.560187 eV Total energy + Delta-G solvation = -2947.379553 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.69203 -37.60687 -34.90602 -33.10622 -31.68397 -29.96552 -29.58127 -27.98313 -26.60672 -24.69562 -23.97066 -22.21749 -21.52484 -21.19994 -19.36942 -18.99865 -16.82943 -16.32938 -15.58472 -15.17969 -14.72830 -14.53412 -13.94861 -13.80757 -13.59966 -13.44575 -13.27458 -12.95047 -12.73077 -12.35290 -12.25258 -12.07992 -11.70985 -11.59648 -11.32811 -11.06847 -11.02336 -10.82361 -10.70022 -10.65532 -10.44397 -10.16020 -10.14806 -9.87494 -9.51164 -9.45914 -8.72728 -8.44505 -8.08141 -6.64257 -5.75191 -3.17070 3.40740 3.47504 3.48519 3.82807 4.40076 4.52985 4.54892 4.67369 4.98908 5.11633 5.18454 5.24116 5.35879 5.38775 5.46767 5.49854 5.53984 5.62029 5.63448 5.69303 5.72410 5.80506 5.93637 5.94644 6.10429 6.18379 6.29707 6.36533 6.43376 6.46718 6.58606 6.67585 6.74397 6.79412 6.81683 6.83084 7.01796 7.42381 7.45081 7.63614 7.73288 7.83722 8.49026 9.25312 9.88932 10.45627 11.33357 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.036988 B = 0.004062 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.813601 B = 6892.091259 C = 7052.917558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.087 4.087 3 H 0.078 0.922 4 C 0.033 3.967 5 N -0.515 5.515 6 C 0.014 3.986 7 C 0.006 3.994 8 C 0.088 3.912 9 H 0.089 0.911 10 N -0.673 5.673 11 C 0.095 3.905 12 C -0.123 4.123 13 C 0.170 3.830 14 N -0.591 5.591 15 C -0.252 4.252 16 H 0.065 0.935 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.902 3.098 20 H -0.287 1.287 21 H -0.292 1.292 22 H -0.279 1.279 23 C 0.148 3.852 24 C -0.132 4.132 25 H 0.039 0.961 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.026 0.974 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.043 0.957 35 H 0.332 0.668 36 H 0.035 0.965 37 H 0.059 0.941 38 H 0.044 0.956 39 H 0.014 0.986 40 H 0.088 0.912 41 H 0.253 0.747 42 H 0.014 0.986 43 H 0.054 0.946 44 H 0.044 0.956 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.345 -3.309 18.467 18.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.107 4.107 3 H 0.096 0.904 4 C -0.095 4.095 5 N -0.239 5.239 6 C -0.135 4.135 7 C -0.124 4.124 8 C -0.023 4.023 9 H 0.107 0.893 10 N -0.303 5.303 11 C -0.013 4.013 12 C -0.163 4.163 13 C 0.044 3.956 14 N -0.314 5.314 15 C -0.381 4.381 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.548 5.548 19 Si 0.732 3.268 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.205 1.205 23 C 0.021 3.979 24 C -0.172 4.172 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.151 0.849 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.032 0.968 40 H 0.106 0.894 41 H 0.063 0.937 42 H 0.032 0.968 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.632 -2.248 18.204 18.354 hybrid contribution -0.520 -1.133 -0.494 1.341 sum 0.112 -3.381 17.710 18.030 Atomic orbital electron populations 1.21491 0.93618 1.01675 1.01029 1.21923 0.96743 0.99185 0.92860 0.90391 1.23275 0.90898 0.97388 0.97899 1.65314 1.33437 1.22767 1.02346 1.22500 1.00495 0.92659 0.97831 1.23940 1.00003 0.97448 0.91042 1.22337 0.91003 0.94914 0.94095 0.89301 1.60852 1.31694 1.35310 1.02460 1.21507 0.96539 0.97022 0.86278 1.22187 1.01426 0.94688 0.97963 1.20807 0.92770 0.93297 0.88716 1.44054 1.58970 1.05284 1.23109 1.19204 1.05149 1.20171 0.93611 0.91721 1.25024 0.95521 1.01688 0.97418 1.70039 1.14838 1.32527 1.37355 0.86293 0.80248 0.78931 0.81327 1.21435 1.21815 1.20475 1.20839 0.97504 0.89343 0.90196 1.22204 1.00262 0.96276 0.98460 0.94228 0.91153 0.93073 0.93886 0.90432 0.95528 0.91403 0.91356 0.90225 0.93890 0.84935 0.94667 0.92179 0.93714 0.96788 0.89399 0.93679 0.96772 0.92773 0.93754 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 8.10 37.15 0.30 -1.01 16 2 C -0.09 -0.98 3.65 -89.24 -0.33 -1.31 16 3 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.03 0.34 6.04 -2.18 -0.01 0.33 16 5 N -0.52 -5.81 5.66 -238.23 -1.35 -7.16 16 6 C 0.01 0.13 9.53 60.06 0.57 0.70 16 7 C 0.01 0.07 6.13 -2.18 -0.01 0.05 16 8 C 0.09 1.12 3.11 -66.34 -0.21 0.91 16 9 H 0.09 1.29 7.18 -51.93 -0.37 0.91 16 10 N -0.67 -9.22 4.38 -98.25 -0.43 -9.65 16 11 C 0.10 1.59 2.31 -67.67 -0.16 1.44 16 12 C -0.12 -2.41 5.57 -26.61 -0.15 -2.56 16 13 C 0.17 4.12 5.31 -3.71 -0.02 4.10 16 14 N -0.59 -14.97 2.99 -172.31 -0.52 -15.49 16 15 C -0.25 -6.99 9.59 -15.06 -0.14 -7.13 16 16 H 0.07 1.77 7.89 -52.48 -0.41 1.35 16 17 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 18 N -0.90 -26.48 11.19 55.49 0.62 -25.85 16 19 Si 0.90 21.90 29.59 -169.99 -5.03 16.87 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.15 3.13 6.51 -3.71 -0.02 3.10 16 24 C -0.13 -2.28 5.36 -26.61 -0.14 -2.42 16 25 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.89 7.95 -51.93 -0.41 0.47 16 27 H 0.05 0.56 7.40 -51.93 -0.38 0.17 16 28 H 0.04 0.43 7.69 -51.93 -0.40 0.03 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.03 0.23 7.97 -51.93 -0.41 -0.18 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.04 0.50 7.32 -51.93 -0.38 0.12 16 35 H 0.33 4.21 7.24 -39.29 -0.28 3.93 16 36 H 0.04 0.62 7.83 -51.93 -0.41 0.21 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.04 0.82 7.47 -51.93 -0.39 0.44 16 39 H 0.01 0.36 8.14 -51.92 -0.42 -0.07 16 40 H 0.09 2.39 6.03 -51.93 -0.31 2.08 16 41 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 42 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.05 1.12 7.94 -51.93 -0.41 0.70 16 44 H 0.04 0.65 8.10 -51.93 -0.42 0.23 16 45 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 339.00 15.07 5.11 5.11 Total: -1.00 -28.82 339.00 -10.37 -39.18 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -8.37 Total: 0.81 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -0.41 Total: -3.83 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -1.67 Total: -58.15 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.82 -10.37 -39.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610677421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.816 kcal (2) G-P(sol) polarization free energy of solvation -28.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds