Wall clock time and date at job start Mon Mar 30 2020 05:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 110.37221 * 2 1 4 4 C 1.54383 * 110.32099 * 122.17720 * 2 1 3 5 5 N 1.48559 * 104.59506 * 142.75234 * 4 2 1 6 6 C 1.46896 * 111.00030 * 200.96040 * 5 4 2 7 7 C 1.48561 * 104.21842 * 320.51584 * 5 4 2 8 8 C 1.54254 * 110.32608 * 237.81139 * 2 1 3 9 9 H 1.09004 * 110.32381 * 122.20959 * 8 2 1 10 10 N 1.46900 * 110.32342 * 0.10713 * 8 2 1 11 11 C 1.46898 * 110.99962 * 154.99701 * 10 8 2 12 12 C 1.53042 * 109.46033 * 275.06497 * 11 10 8 13 13 C 1.53197 * 109.31274 * 178.61640 * 12 11 10 14 14 N 1.46930 * 108.77670 * 54.63312 * 13 12 11 15 15 C 1.36935 * 120.62803 * 126.37049 * 14 13 12 16 16 H 1.08004 * 119.99966 * 207.70219 * 15 14 13 17 17 C 1.38816 * 120.00045 * 27.69764 * 15 14 13 18 18 N 1.31618 * 119.99935 * 17.35720 * 17 15 14 19 19 Si 1.86801 * 119.99853 * 197.35104 * 17 15 14 20 20 H 1.48499 * 109.46808 * 90.00414 * 19 17 15 21 21 H 1.48501 * 109.46989 * 210.00595 * 19 17 15 22 22 H 1.48496 * 109.47183 * 330.00499 * 19 17 15 23 23 C 1.46922 * 118.73882 * 306.39567 * 14 13 12 24 24 C 1.53047 * 109.45979 * 154.99712 * 11 10 8 25 25 H 1.09001 * 109.47372 * 299.27573 * 1 2 3 26 26 H 1.09001 * 109.47384 * 59.27563 * 1 2 3 27 27 H 1.09000 * 109.47415 * 179.27197 * 1 2 3 28 28 H 1.09001 * 110.41316 * 23.97254 * 4 2 1 29 29 H 1.09005 * 110.51209 * 261.57590 * 4 2 1 30 30 H 1.09005 * 109.47519 * 59.87283 * 6 5 4 31 31 H 1.09003 * 109.47076 * 299.87048 * 6 5 4 32 32 H 1.09003 * 109.47172 * 179.87004 * 6 5 4 33 33 H 1.08999 * 110.41157 * 158.26383 * 7 5 4 34 34 H 1.09000 * 110.41059 * 280.70273 * 7 5 4 35 35 H 1.00901 * 110.99951 * 278.95010 * 10 8 2 36 36 H 1.09001 * 109.46229 * 35.02907 * 11 10 8 37 37 H 1.08997 * 109.49959 * 298.56896 * 12 11 10 38 38 H 1.08997 * 109.49575 * 58.67135 * 12 11 10 39 39 H 1.09007 * 109.58570 * 294.85119 * 13 12 11 40 40 H 1.08991 * 109.58773 * 174.42324 * 13 12 11 41 41 H 0.96998 * 119.99871 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.58932 * 293.81504 * 23 14 13 43 43 H 1.09003 * 109.70003 * 173.46262 * 23 14 13 44 44 H 1.09002 * 109.49754 * 301.33874 * 24 11 10 45 45 H 1.09007 * 109.49516 * 61.40497 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0661 -0.7710 1.2254 5 7 3.2693 -1.4828 0.7227 6 6 3.6067 -2.6216 1.5871 7 6 2.8806 -1.9422 -0.6355 8 6 2.0658 -0.7706 -1.2242 9 1 2.7082 -0.1269 -1.8252 10 7 0.9512 -1.2781 -2.0354 11 6 1.3625 -1.4723 -3.4322 12 6 1.2290 -0.1503 -4.1915 13 6 1.6913 -0.3482 -5.6386 14 7 0.9358 -1.4618 -6.2284 15 6 0.2565 -1.2977 -7.4060 16 1 -0.6167 -1.8983 -7.6139 17 6 0.6901 -0.3592 -8.3324 18 7 1.9120 0.1242 -8.2569 19 14 -0.4604 0.2172 -9.6864 20 1 -1.2244 1.4007 -9.2162 21 1 0.3328 0.5850 -10.8868 22 1 -1.4043 -0.8757 -10.0326 23 6 0.9226 -2.7545 -5.5304 24 6 0.4688 -2.5297 -4.0846 25 1 -0.3634 0.5025 0.8964 26 1 -0.3634 0.5250 -0.8834 27 1 -0.3634 -1.0276 -0.0131 28 1 1.3228 -1.4848 1.5805 29 1 2.3390 -0.0793 2.0224 30 1 2.7700 -3.3198 1.6114 31 1 3.8107 -2.2637 2.5963 32 1 4.4897 -3.1262 1.1950 33 1 3.7670 -2.1309 -1.2412 34 1 2.2648 -2.8393 -0.5717 35 1 0.5798 -2.1316 -1.6458 36 1 2.4000 -1.8051 -3.4624 37 1 0.1873 0.1706 -4.1831 38 1 1.8478 0.6084 -3.7125 39 1 2.7562 -0.5807 -5.6534 40 1 1.5060 0.5618 -6.2091 41 1 2.2151 0.7796 -8.9045 42 1 1.9246 -3.1834 -5.5364 43 1 0.2313 -3.4342 -6.0288 44 1 0.5465 -3.4645 -3.5293 45 1 -0.5658 -2.1867 -4.0767 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610677421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:26 Heat of formation + Delta-G solvation = 8.848119 kcal Electronic energy + Delta-G solvation = -21574.754338 eV Core-core repulsion = 18626.560187 eV Total energy + Delta-G solvation = -2948.194151 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.70608 -39.13085 -36.32519 -34.44522 -33.21211 -31.64948 -31.10986 -29.09366 -27.58758 -26.38150 -25.06740 -23.84679 -23.09324 -22.19690 -20.76397 -20.27146 -18.71608 -17.50037 -16.80524 -16.52073 -16.12294 -15.68466 -15.43398 -15.30934 -14.92752 -14.80281 -14.54797 -14.38680 -13.81722 -13.75233 -13.51451 -13.14285 -13.04381 -12.90805 -12.76853 -12.59031 -12.38035 -12.30139 -12.05686 -11.94284 -11.92343 -11.77340 -11.63298 -11.37456 -11.21229 -11.05885 -10.54625 -9.56169 -9.24312 -8.69645 -7.87266 -5.32345 1.46749 1.48786 1.57240 2.51701 2.92507 3.26019 3.37005 3.62133 3.70006 3.75291 4.00045 4.09491 4.16557 4.25290 4.41558 4.45104 4.51038 4.53076 4.56582 4.64896 4.72959 4.76028 4.82925 4.86631 4.89111 4.93021 4.98005 4.99832 5.11752 5.14316 5.22568 5.27533 5.40907 5.41177 5.53664 5.59162 5.65103 5.76228 5.79471 6.03768 6.19628 6.39121 6.55676 7.14963 7.86607 8.38263 9.19345 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.036988 B = 0.004062 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.813601 B = 6892.091259 C = 7052.917558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.085 4.085 3 H 0.074 0.926 4 C 0.039 3.961 5 N -0.530 5.530 6 C 0.014 3.986 7 C 0.012 3.988 8 C 0.087 3.913 9 H 0.067 0.933 10 N -0.665 5.665 11 C 0.108 3.892 12 C -0.107 4.107 13 C 0.179 3.821 14 N -0.610 5.610 15 C -0.264 4.264 16 H 0.067 0.933 17 C -0.051 4.051 18 N -0.936 5.936 19 Si 0.967 3.033 20 H -0.286 1.286 21 H -0.295 1.295 22 H -0.267 1.267 23 C 0.142 3.858 24 C -0.118 4.118 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.087 0.913 30 H 0.032 0.968 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.344 0.656 36 H 0.029 0.971 37 H 0.049 0.951 38 H 0.052 0.948 39 H -0.009 1.009 40 H 0.052 0.948 41 H 0.249 0.751 42 H 0.011 0.989 43 H 0.056 0.944 44 H 0.080 0.920 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.700 -4.251 20.486 20.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.105 4.105 3 H 0.092 0.908 4 C -0.089 4.089 5 N -0.254 5.254 6 C -0.135 4.135 7 C -0.118 4.118 8 C -0.024 4.024 9 H 0.086 0.914 10 N -0.296 5.296 11 C -0.001 4.001 12 C -0.147 4.147 13 C 0.052 3.948 14 N -0.334 5.334 15 C -0.394 4.394 16 H 0.085 0.915 17 C -0.246 4.246 18 N -0.582 5.582 19 Si 0.795 3.205 20 H -0.213 1.213 21 H -0.221 1.221 22 H -0.192 1.192 23 C 0.016 3.984 24 C -0.157 4.157 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.051 0.949 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.165 0.835 36 H 0.047 0.953 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.009 0.991 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.029 0.971 43 H 0.075 0.925 44 H 0.099 0.901 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.426 -3.220 20.262 20.520 hybrid contribution -0.149 -0.867 -1.083 1.396 sum -0.575 -4.087 19.178 19.617 Atomic orbital electron populations 1.21414 0.93140 1.01727 1.00872 1.21897 0.97038 0.98940 0.92588 0.90779 1.23254 0.90714 0.97492 0.97405 1.65309 1.33976 1.23814 1.02335 1.22546 1.00743 0.92160 0.98024 1.23806 0.99441 0.97124 0.91464 1.22310 0.90603 0.95262 0.94256 0.91422 1.60710 1.32044 1.35936 1.00898 1.21204 0.96224 0.94918 0.87798 1.21921 1.00457 0.96879 0.95423 1.20572 0.91552 0.91675 0.90962 1.44321 1.58879 1.07098 1.23082 1.19550 1.05345 1.20087 0.94412 0.91508 1.25797 0.96834 1.02101 0.99912 1.70195 1.16541 1.33170 1.38312 0.85266 0.78350 0.78509 0.78339 1.21263 1.22149 1.19185 1.21022 0.97544 0.87543 0.92256 1.22018 0.99559 0.98066 0.96094 0.92674 0.93094 0.92784 0.92972 0.89419 0.94905 0.90182 0.91270 0.91280 0.93087 0.83549 0.95284 0.93233 0.92892 0.99075 0.92999 0.94155 0.97076 0.92532 0.90109 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.22 8.10 71.98 0.58 -1.64 16 2 C -0.09 -1.74 3.65 -9.90 -0.04 -1.78 16 3 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 4 C 0.04 0.69 6.04 86.45 0.52 1.21 16 5 N -0.53 -10.73 5.66 -907.62 -5.14 -15.87 16 6 C 0.01 0.22 9.53 127.69 1.22 1.43 16 7 C 0.01 0.25 6.13 86.45 0.53 0.78 16 8 C 0.09 2.08 3.11 45.81 0.14 2.23 16 9 H 0.07 1.93 7.18 -2.38 -0.02 1.91 16 10 N -0.66 -16.92 4.38 -464.76 -2.04 -18.96 16 11 C 0.11 3.49 2.31 44.95 0.10 3.59 16 12 C -0.11 -4.23 5.57 30.67 0.17 -4.06 16 13 C 0.18 8.95 5.31 86.36 0.46 9.41 16 14 N -0.61 -31.38 2.99 -699.08 -2.09 -33.48 16 15 C -0.26 -14.83 9.59 84.03 0.81 -14.02 16 16 H 0.07 3.65 7.89 -2.91 -0.02 3.62 16 17 C -0.05 -2.92 4.91 84.86 0.42 -2.50 16 18 N -0.94 -56.63 11.19 21.65 0.24 -56.39 16 19 Si 0.97 45.64 29.59 68.60 2.03 47.67 16 20 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 C 0.14 5.91 6.51 86.36 0.56 6.48 16 24 C -0.12 -3.83 5.36 30.67 0.16 -3.67 16 25 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.05 1.20 7.95 -2.39 -0.02 1.18 16 27 H 0.05 1.02 7.40 -2.39 -0.02 1.00 16 28 H 0.05 0.85 7.69 -2.39 -0.02 0.83 16 29 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.03 0.48 7.97 -2.38 -0.02 0.46 16 31 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.05 1.03 7.32 -2.39 -0.02 1.01 16 35 H 0.34 7.64 7.24 -89.69 -0.65 6.99 16 36 H 0.03 0.99 7.83 -2.39 -0.02 0.98 16 37 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.05 1.98 7.47 -2.39 -0.02 1.96 16 39 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 40 H 0.05 2.95 6.03 -2.39 -0.01 2.94 16 41 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 42 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.06 2.29 7.94 -2.39 -0.02 2.27 16 44 H 0.08 2.08 8.10 -2.39 -0.02 2.06 16 45 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 Total: -1.00 -62.94 339.00 -1.07 -64.00 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.29 Total: 15.55 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 5.64 Total: -2.53 kcal Atomic # 7 Polarization: -115.67 SS G_CDS: -9.02 Total: -124.69 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -62.94 -1.07 -64.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610677421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.853 kcal (2) G-P(sol) polarization free energy of solvation -62.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds