Wall clock time and date at job start Mon Mar 30 2020 04:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.29018 * 126.43922 * 2 1 4 4 N 1.28740 * 108.81268 * 179.97438 * 3 2 1 5 5 N 1.28842 * 109.39098 * 359.76740 * 4 3 2 6 6 C 1.31066 * 107.99355 * 0.37634 * 5 4 3 7 7 C 1.50706 * 126.66316 * 179.89614 * 6 5 4 8 8 C 1.53000 * 109.47116 * 269.68592 * 7 6 5 9 9 N 1.46896 * 109.47074 * 179.97438 * 8 7 6 10 10 C 1.46906 * 111.00024 * 180.02562 * 9 8 7 11 11 C 1.52993 * 109.47328 * 180.02562 * 10 9 8 12 12 C 1.53005 * 109.46897 * 299.99589 * 11 10 9 13 13 C 1.53001 * 109.47330 * 59.99676 * 11 10 9 14 14 C 1.52992 * 109.47269 * 180.02562 * 11 10 9 15 15 C 1.50701 * 109.47509 * 180.02562 * 14 11 10 16 16 H 1.08004 * 119.99545 * 359.97438 * 15 14 11 17 17 C 1.37881 * 120.00578 * 179.97438 * 15 14 11 18 18 N 1.31510 * 119.99532 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00242 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47093 * 59.99998 * 19 17 15 21 21 H 1.48496 * 109.47332 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47428 * 300.00336 * 19 17 15 23 23 H 1.09000 * 109.47068 * 270.02948 * 1 2 3 24 24 H 1.09005 * 109.46885 * 30.02263 * 1 2 3 25 25 H 1.08999 * 109.47239 * 150.02475 * 1 2 3 26 26 H 1.09000 * 109.46646 * 29.68005 * 7 6 5 27 27 H 1.09000 * 109.47248 * 149.68723 * 7 6 5 28 28 H 1.09000 * 109.47214 * 300.00167 * 8 7 6 29 29 H 1.09008 * 109.47142 * 59.99333 * 8 7 6 30 30 H 1.00893 * 111.00168 * 56.05011 * 9 8 7 31 31 H 1.09000 * 109.46874 * 300.00255 * 10 9 8 32 32 H 1.09004 * 109.47166 * 59.99603 * 10 9 8 33 33 H 1.08999 * 109.47024 * 60.00359 * 12 11 10 34 34 H 1.08996 * 109.47176 * 179.97438 * 12 11 10 35 35 H 1.08996 * 109.47593 * 300.00148 * 12 11 10 36 36 H 1.09000 * 109.46896 * 60.00008 * 13 11 10 37 37 H 1.08996 * 109.47308 * 180.02562 * 13 11 10 38 38 H 1.08999 * 109.47290 * 300.00069 * 13 11 10 39 39 H 1.09005 * 109.46904 * 299.99157 * 14 11 10 40 40 H 1.09001 * 109.47575 * 59.99725 * 14 11 10 41 41 H 0.97001 * 119.99999 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2313 1.0379 0.0000 4 7 3.4583 0.6481 0.0005 5 7 3.4980 -0.6397 0.0058 6 6 2.2645 -1.0828 0.0006 7 6 1.8263 -2.5247 0.0015 8 6 1.6777 -3.0136 -1.4406 9 7 1.2512 -4.4193 -1.4397 10 6 1.0985 -4.9241 -2.8108 11 6 0.6538 -6.3873 -2.7690 12 6 1.7063 -7.2194 -2.0336 13 6 -0.6843 -6.4930 -2.0347 14 6 0.4954 -6.9132 -4.1970 15 6 0.0567 -8.3544 -4.1559 16 1 -0.0936 -8.8462 -3.2061 17 6 -0.1527 -9.0451 -5.3306 18 7 0.0298 -8.4461 -6.4871 19 14 -0.6958 -10.8317 -5.2796 20 1 -1.9945 -10.9341 -4.5668 21 1 -0.8508 -11.3417 -6.6656 22 1 0.3256 -11.6393 -4.5658 23 1 -0.3633 0.0005 1.0277 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3633 -0.8902 -0.5134 26 1 2.5723 -3.1308 0.5156 27 1 0.8692 -2.6133 0.5156 28 1 0.9318 -2.4075 -1.9547 29 1 2.6349 -2.9250 -1.9547 30 1 0.3987 -4.5381 -0.9133 31 1 0.3484 -4.3315 -3.3346 32 1 2.0517 -4.8484 -3.3341 33 1 1.8196 -6.8449 -1.0162 34 1 1.3893 -8.2618 -2.0034 35 1 2.6596 -7.1442 -2.5567 36 1 -1.4341 -5.9002 -2.5586 37 1 -1.0009 -7.5355 -2.0045 38 1 -0.5710 -6.1185 -1.0173 39 1 -0.2543 -6.3205 -4.7213 40 1 1.4488 -6.8380 -4.7198 41 1 -0.1179 -8.9319 -7.3136 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611314613.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:18 Heat of formation + Delta-G solvation = 97.925466 kcal Electronic energy + Delta-G solvation = -20136.253007 eV Core-core repulsion = 17088.381197 eV Total energy + Delta-G solvation = -3047.871811 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.175 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.41792 -37.96752 -36.14067 -35.43434 -33.31293 -32.15776 -29.91787 -28.59199 -26.97617 -26.39826 -25.42333 -23.85290 -23.40245 -22.13757 -21.70589 -18.04029 -17.71644 -17.49608 -16.30200 -15.97923 -15.55965 -14.90326 -14.57076 -14.21616 -14.08814 -13.77307 -13.64486 -13.01992 -12.77176 -12.69810 -12.46020 -12.28835 -12.02125 -11.76863 -11.54482 -11.35128 -11.16458 -11.00014 -10.91714 -10.82037 -10.54091 -10.37479 -10.26069 -10.14638 -9.74598 -9.08225 -8.89372 -8.34819 -8.30746 -5.99365 -3.99879 0.94568 1.68425 2.00414 3.32243 3.37424 3.39143 3.55947 3.84255 4.33033 4.38939 4.42958 4.50194 4.71234 4.74270 4.90471 5.05556 5.22453 5.36419 5.44418 5.53248 5.58321 5.68349 5.73411 5.88906 5.90277 6.14179 6.24244 6.41983 6.59419 6.70306 6.77606 7.06129 7.14675 7.20842 7.27606 7.49269 7.65721 7.80303 8.00379 8.36862 8.44172 9.05276 9.63152 11.12275 Molecular weight = 267.18amu Principal moments of inertia in cm(-1) A = 0.046009 B = 0.002997 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.432261 B = 9339.295664 C = 9369.455277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.311 5.311 3 N -0.100 5.100 4 N -0.076 5.076 5 N -0.299 5.299 6 C 0.194 3.806 7 C -0.038 4.038 8 C 0.064 3.936 9 N -0.683 5.683 10 C 0.071 3.929 11 C -0.059 4.059 12 C -0.117 4.117 13 C -0.129 4.129 14 C 0.034 3.966 15 C -0.509 4.509 16 H 0.059 0.941 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.888 3.112 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.277 1.277 23 H 0.098 0.902 24 H 0.107 0.893 25 H 0.106 0.894 26 H 0.118 0.882 27 H 0.090 0.910 28 H 0.026 0.974 29 H 0.082 0.918 30 H 0.339 0.661 31 H 0.025 0.975 32 H 0.069 0.931 33 H 0.043 0.957 34 H 0.055 0.945 35 H 0.040 0.960 36 H 0.040 0.960 37 H 0.065 0.935 38 H 0.033 0.967 39 H 0.012 0.988 40 H 0.015 0.985 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.441 13.735 13.738 19.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.113 5.113 3 N -0.086 5.086 4 N -0.070 5.070 5 N -0.149 5.149 6 C -0.085 4.085 7 C -0.079 4.079 8 C -0.068 4.068 9 N -0.315 5.315 10 C -0.058 4.058 11 C -0.059 4.059 12 C -0.174 4.174 13 C -0.186 4.186 14 C -0.004 4.004 15 C -0.547 4.547 16 H 0.077 0.923 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.716 3.284 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.203 1.203 23 H 0.117 0.883 24 H 0.126 0.874 25 H 0.125 0.875 26 H 0.137 0.863 27 H 0.108 0.892 28 H 0.044 0.956 29 H 0.100 0.900 30 H 0.158 0.842 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.084 0.916 38 H 0.052 0.948 39 H 0.030 0.970 40 H 0.034 0.966 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.825 14.504 13.617 19.912 hybrid contribution -2.020 -1.025 -0.482 2.316 sum -2.845 13.479 13.135 19.035 Atomic orbital electron populations 1.22427 0.71515 1.06778 1.05697 1.48435 1.10730 1.04393 1.47701 1.78870 0.98047 1.12806 1.18886 1.78630 1.09650 1.03947 1.14785 1.75064 1.17678 1.03349 1.18760 1.26135 0.86655 0.94315 1.01385 1.20248 1.03708 0.84011 0.99964 1.21869 1.01476 0.89883 0.93523 1.60511 1.38766 1.15722 1.16462 1.22139 1.00126 0.96560 0.86951 1.20642 0.94454 0.91459 0.99371 1.21607 0.97711 0.99760 0.98334 1.21773 0.97015 1.02596 0.97237 1.19118 0.96865 0.95716 0.88661 1.21190 1.44937 0.96475 0.92105 0.92317 1.25015 0.95864 0.97984 0.95696 1.69951 1.49819 1.36732 0.97228 0.86721 0.79165 0.85569 0.76917 1.20369 1.21438 1.20266 0.88311 0.87393 0.87543 0.86347 0.89169 0.95624 0.89994 0.84212 0.95718 0.91276 0.93829 0.92639 0.94070 0.94134 0.91616 0.94817 0.96969 0.96637 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.28 11.09 59.85 0.66 0.94 16 2 N -0.31 -2.81 3.75 -65.03 -0.24 -3.05 16 3 N -0.10 -1.23 13.29 60.35 0.80 -0.43 16 4 N -0.08 -1.10 13.43 60.35 0.81 -0.29 16 5 N -0.30 -4.12 12.36 32.70 0.40 -3.71 16 6 C 0.19 1.98 7.39 -155.43 -1.15 0.83 16 7 C -0.04 -0.30 5.62 -27.88 -0.16 -0.46 16 8 C 0.06 0.63 5.67 -3.83 -0.02 0.61 16 9 N -0.68 -8.13 5.71 -113.78 -0.65 -8.78 16 10 C 0.07 1.10 4.65 -3.82 -0.02 1.08 16 11 C -0.06 -1.09 0.60 -154.51 -0.09 -1.18 16 12 C -0.12 -2.13 8.06 37.16 0.30 -1.83 16 13 C -0.13 -2.17 7.89 37.16 0.29 -1.87 16 14 C 0.03 0.82 4.04 -27.89 -0.11 0.71 16 15 C -0.51 -13.52 7.65 -34.44 -0.26 -13.78 16 16 H 0.06 1.51 5.68 -52.48 -0.30 1.21 16 17 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 18 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 19 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 24 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.11 0.21 7.75 -51.93 -0.40 -0.19 16 26 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.09 0.44 7.81 -51.93 -0.41 0.03 16 28 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 30 H 0.34 3.55 6.77 -39.30 -0.27 3.28 16 31 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.04 0.69 7.60 -51.93 -0.39 0.30 16 34 H 0.05 1.09 6.62 -51.93 -0.34 0.75 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 1.23 6.62 -51.93 -0.34 0.89 16 38 H 0.03 0.45 6.57 -51.93 -0.34 0.11 16 39 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 334.09 15.07 5.03 5.03 Total: -1.00 -32.60 334.09 -5.36 -37.96 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -6.58 Total: -3.69 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -0.65 Total: -13.51 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 1.86 Total: -41.95 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.60 -5.36 -37.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611314613.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.890 kcal (2) G-P(sol) polarization free energy of solvation -32.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds