Wall clock time and date at job start Mon Mar 30 2020 04:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.29018 * 126.43922 * 2 1 4 4 N 1.28740 * 108.81268 * 179.97438 * 3 2 1 5 5 N 1.28842 * 109.39098 * 359.76740 * 4 3 2 6 6 C 1.31066 * 107.99355 * 0.37634 * 5 4 3 7 7 C 1.50706 * 126.66316 * 179.89614 * 6 5 4 8 8 C 1.53000 * 109.47116 * 269.68592 * 7 6 5 9 9 N 1.46896 * 109.47074 * 179.97438 * 8 7 6 10 10 C 1.46906 * 111.00024 * 180.02562 * 9 8 7 11 11 C 1.52993 * 109.47328 * 180.02562 * 10 9 8 12 12 C 1.53005 * 109.46897 * 299.99589 * 11 10 9 13 13 C 1.53001 * 109.47330 * 59.99676 * 11 10 9 14 14 C 1.52992 * 109.47269 * 180.02562 * 11 10 9 15 15 C 1.50701 * 109.47509 * 180.02562 * 14 11 10 16 16 H 1.08004 * 119.99545 * 359.97438 * 15 14 11 17 17 C 1.37881 * 120.00578 * 179.97438 * 15 14 11 18 18 N 1.31510 * 119.99532 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00242 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47093 * 59.99998 * 19 17 15 21 21 H 1.48496 * 109.47332 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47428 * 300.00336 * 19 17 15 23 23 H 1.09000 * 109.47068 * 270.02948 * 1 2 3 24 24 H 1.09005 * 109.46885 * 30.02263 * 1 2 3 25 25 H 1.08999 * 109.47239 * 150.02475 * 1 2 3 26 26 H 1.09000 * 109.46646 * 29.68005 * 7 6 5 27 27 H 1.09000 * 109.47248 * 149.68723 * 7 6 5 28 28 H 1.09000 * 109.47214 * 300.00167 * 8 7 6 29 29 H 1.09008 * 109.47142 * 59.99333 * 8 7 6 30 30 H 1.00893 * 111.00168 * 56.05011 * 9 8 7 31 31 H 1.09000 * 109.46874 * 300.00255 * 10 9 8 32 32 H 1.09004 * 109.47166 * 59.99603 * 10 9 8 33 33 H 1.08999 * 109.47024 * 60.00359 * 12 11 10 34 34 H 1.08996 * 109.47176 * 179.97438 * 12 11 10 35 35 H 1.08996 * 109.47593 * 300.00148 * 12 11 10 36 36 H 1.09000 * 109.46896 * 60.00008 * 13 11 10 37 37 H 1.08996 * 109.47308 * 180.02562 * 13 11 10 38 38 H 1.08999 * 109.47290 * 300.00069 * 13 11 10 39 39 H 1.09005 * 109.46904 * 299.99157 * 14 11 10 40 40 H 1.09001 * 109.47575 * 59.99725 * 14 11 10 41 41 H 0.97001 * 119.99999 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2313 1.0379 0.0000 4 7 3.4583 0.6481 0.0005 5 7 3.4980 -0.6397 0.0058 6 6 2.2645 -1.0828 0.0006 7 6 1.8263 -2.5247 0.0015 8 6 1.6777 -3.0136 -1.4406 9 7 1.2512 -4.4193 -1.4397 10 6 1.0985 -4.9241 -2.8108 11 6 0.6538 -6.3873 -2.7690 12 6 1.7063 -7.2194 -2.0336 13 6 -0.6843 -6.4930 -2.0347 14 6 0.4954 -6.9132 -4.1970 15 6 0.0567 -8.3544 -4.1559 16 1 -0.0936 -8.8462 -3.2061 17 6 -0.1527 -9.0451 -5.3306 18 7 0.0298 -8.4461 -6.4871 19 14 -0.6958 -10.8317 -5.2796 20 1 -1.9945 -10.9341 -4.5668 21 1 -0.8508 -11.3417 -6.6656 22 1 0.3256 -11.6393 -4.5658 23 1 -0.3633 0.0005 1.0277 24 1 -0.3633 0.8898 -0.5142 25 1 -0.3633 -0.8902 -0.5134 26 1 2.5723 -3.1308 0.5156 27 1 0.8692 -2.6133 0.5156 28 1 0.9318 -2.4075 -1.9547 29 1 2.6349 -2.9250 -1.9547 30 1 0.3987 -4.5381 -0.9133 31 1 0.3484 -4.3315 -3.3346 32 1 2.0517 -4.8484 -3.3341 33 1 1.8196 -6.8449 -1.0162 34 1 1.3893 -8.2618 -2.0034 35 1 2.6596 -7.1442 -2.5567 36 1 -1.4341 -5.9002 -2.5586 37 1 -1.0009 -7.5355 -2.0045 38 1 -0.5710 -6.1185 -1.0173 39 1 -0.2543 -6.3205 -4.7213 40 1 1.4488 -6.8380 -4.7198 41 1 -0.1179 -8.9319 -7.3136 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611314613.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:17 Heat of formation + Delta-G solvation = 75.036155 kcal Electronic energy + Delta-G solvation = -20137.245562 eV Core-core repulsion = 17088.381197 eV Total energy + Delta-G solvation = -3048.864366 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.175 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.24100 -39.27244 -37.01590 -36.39579 -34.72318 -33.73465 -30.82491 -29.24999 -28.76197 -27.82534 -26.71819 -25.02359 -24.42540 -23.51629 -22.45841 -19.50971 -18.39690 -18.30644 -18.27751 -16.92755 -16.63808 -16.36570 -15.76015 -15.29882 -14.99454 -14.69573 -14.59250 -14.21690 -14.03163 -13.85093 -13.72371 -13.29601 -13.23307 -13.04277 -12.72157 -12.69434 -12.53442 -12.25774 -12.19193 -12.12812 -12.06023 -11.89758 -11.84800 -11.32605 -11.11300 -10.82032 -10.68758 -10.48106 -9.31674 -8.12374 -6.19193 0.17091 1.09441 1.12743 1.42652 1.44600 1.51763 2.45221 2.80735 3.21931 3.24472 3.52839 3.87272 3.95950 4.17737 4.21389 4.25623 4.29475 4.32908 4.44230 4.51333 4.56891 4.76800 4.78534 4.83547 4.95001 4.97043 5.00682 5.14474 5.26281 5.27320 5.28787 5.56280 5.59371 5.64297 5.69361 5.91896 5.95942 6.01764 6.38730 6.60076 6.96733 7.48387 7.50597 8.99808 Molecular weight = 267.18amu Principal moments of inertia in cm(-1) A = 0.046009 B = 0.002997 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.432261 B = 9339.295664 C = 9369.455277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.298 5.298 3 N -0.111 5.111 4 N -0.114 5.114 5 N -0.336 5.336 6 C 0.197 3.803 7 C -0.027 4.027 8 C 0.068 3.932 9 N -0.677 5.677 10 C 0.083 3.917 11 C -0.056 4.056 12 C -0.109 4.109 13 C -0.122 4.122 14 C 0.038 3.962 15 C -0.513 4.513 16 H 0.068 0.932 17 C -0.005 4.005 18 N -0.939 5.939 19 Si 0.955 3.045 20 H -0.266 1.266 21 H -0.290 1.290 22 H -0.269 1.269 23 H 0.125 0.875 24 H 0.117 0.883 25 H 0.130 0.870 26 H 0.117 0.883 27 H 0.132 0.868 28 H 0.039 0.961 29 H 0.058 0.942 30 H 0.353 0.647 31 H 0.024 0.976 32 H 0.050 0.950 33 H 0.074 0.926 34 H 0.037 0.963 35 H 0.025 0.975 36 H 0.039 0.961 37 H 0.044 0.956 38 H 0.076 0.924 39 H -0.015 1.015 40 H -0.020 1.020 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.274 13.470 16.101 21.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.100 5.100 3 N -0.098 5.098 4 N -0.108 5.108 5 N -0.186 5.186 6 C -0.081 4.081 7 C -0.067 4.067 8 C -0.063 4.063 9 N -0.310 5.310 10 C -0.046 4.046 11 C -0.056 4.056 12 C -0.166 4.166 13 C -0.179 4.179 14 C 0.001 3.999 15 C -0.551 4.551 16 H 0.086 0.914 17 C -0.202 4.202 18 N -0.581 5.581 19 Si 0.780 3.220 20 H -0.190 1.190 21 H -0.216 1.216 22 H -0.194 1.194 23 H 0.143 0.857 24 H 0.136 0.864 25 H 0.148 0.852 26 H 0.135 0.865 27 H 0.150 0.850 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.174 0.826 31 H 0.042 0.958 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.044 0.956 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.095 0.905 39 H 0.003 0.997 40 H -0.002 1.002 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.684 14.246 16.012 21.600 hybrid contribution -1.507 -0.900 -1.221 2.138 sum -4.191 13.346 14.791 20.358 Atomic orbital electron populations 1.23009 0.68284 1.08511 1.07997 1.48808 1.12299 1.03248 1.45694 1.78765 0.97966 1.14058 1.18974 1.78596 1.10874 1.04577 1.16755 1.74961 1.20107 1.03400 1.20129 1.26416 0.85963 0.95321 1.00437 1.20265 1.05786 0.82088 0.98592 1.21788 1.00635 0.88824 0.95073 1.60339 1.39550 1.17144 1.13961 1.21786 0.98976 0.94721 0.89119 1.20501 0.96137 0.93253 0.95748 1.21529 0.96629 0.98709 0.99753 1.21690 0.95379 1.01519 0.99351 1.19022 0.93897 0.94932 0.92082 1.21622 1.43634 0.97555 0.92332 0.91412 1.25919 0.96267 1.02535 0.95454 1.70102 1.51538 1.38557 0.97904 0.85654 0.79250 0.80236 0.76854 1.19047 1.21616 1.19433 0.85662 0.86418 0.85188 0.86491 0.84981 0.94248 0.92338 0.82568 0.95828 0.93125 0.90743 0.94429 0.95586 0.94204 0.93723 0.90520 0.99680 1.00184 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.20 11.09 127.77 1.42 1.62 16 2 N -0.30 -4.68 3.75 -359.64 -1.35 -6.03 16 3 N -0.11 -2.63 13.29 37.02 0.49 -2.14 16 4 N -0.11 -3.33 13.43 37.01 0.50 -2.84 16 5 N -0.34 -9.13 12.36 -50.45 -0.62 -9.75 16 6 C 0.20 3.63 7.39 138.14 1.02 4.65 16 7 C -0.03 -0.32 5.62 29.85 0.17 -0.15 16 8 C 0.07 1.15 5.67 86.30 0.49 1.64 16 9 N -0.68 -13.89 5.71 -513.88 -2.94 -16.83 16 10 C 0.08 2.49 4.65 86.30 0.40 2.89 16 11 C -0.06 -2.02 0.60 -52.18 -0.03 -2.06 16 12 C -0.11 -3.83 8.06 71.98 0.58 -3.25 16 13 C -0.12 -3.79 7.89 71.98 0.57 -3.22 16 14 C 0.04 1.91 4.04 29.85 0.12 2.03 16 15 C -0.51 -27.56 7.65 25.60 0.20 -27.36 16 16 H 0.07 3.45 5.68 -2.91 -0.02 3.44 16 17 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 18 N -0.94 -56.82 13.29 21.45 0.28 -56.53 16 19 Si 0.95 43.53 29.54 68.60 2.03 45.56 16 20 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 21 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 23 H 0.13 -0.16 8.14 -2.39 -0.02 -0.18 16 24 H 0.12 0.23 8.14 -2.38 -0.02 0.21 16 25 H 0.13 -0.13 7.75 -2.39 -0.02 -0.15 16 26 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.13 0.51 7.81 -2.39 -0.02 0.49 16 28 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.35 5.61 6.77 -89.70 -0.61 5.00 16 31 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.07 2.15 7.60 -2.39 -0.02 2.13 16 34 H 0.04 1.43 6.62 -2.39 -0.02 1.42 16 35 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.04 1.57 6.62 -2.39 -0.02 1.56 16 38 H 0.08 1.72 6.57 -2.39 -0.02 1.70 16 39 H -0.02 -0.83 8.14 -2.38 -0.02 -0.85 16 40 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 41 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -74.63 334.09 4.19 -70.44 By element: Atomic # 1 Polarization: 0.75 SS G_CDS: 0.41 Total: 1.16 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: 5.39 Total: -23.04 kcal Atomic # 7 Polarization: -90.49 SS G_CDS: -3.63 Total: -94.12 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -74.63 4.19 -70.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611314613.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.473 kcal (2) G-P(sol) polarization free energy of solvation -74.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds