Wall clock time and date at job start Mon Mar 30 2020 04:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46956 * 111.00162 * 2 1 4 4 C 1.53058 * 109.36530 * 183.18808 * 3 2 1 5 5 N 1.46951 * 109.38403 * 301.59045 * 4 3 2 6 6 C 1.46995 * 110.85987 * 59.30410 * 5 4 3 7 7 C 1.46958 * 111.00188 * 123.80240 * 2 1 3 8 8 H 1.09001 * 109.48561 * 296.77512 * 7 2 1 9 9 C 1.50698 * 109.48840 * 56.81735 * 7 2 1 10 10 O 1.21272 * 119.99988 * 27.47770 * 9 7 2 11 11 N 1.34782 * 119.99703 * 207.47204 * 9 7 2 12 12 C 1.46508 * 119.99694 * 184.96868 * 11 9 7 13 13 C 1.50696 * 109.47084 * 90.00000 * 12 11 9 14 14 H 1.08000 * 120.00101 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00166 * 180.02562 * 13 12 11 16 16 N 1.31523 * 119.99715 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00487 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47638 * 89.99601 * 17 15 13 19 19 H 1.48503 * 109.47143 * 209.99994 * 17 15 13 20 20 H 1.48503 * 109.46853 * 329.99658 * 17 15 13 21 21 C 1.46499 * 120.00390 * 4.97007 * 11 9 7 22 22 C 1.52995 * 117.49859 * 183.81680 * 21 11 9 23 23 C 1.52996 * 117.49837 * 115.18986 * 21 11 9 24 24 H 1.09001 * 109.46821 * 54.59842 * 1 2 3 25 25 H 1.08997 * 109.47357 * 174.60244 * 1 2 3 26 26 H 1.09003 * 109.46813 * 294.60608 * 1 2 3 27 27 H 1.08995 * 109.49051 * 63.22215 * 3 2 1 28 28 H 1.09002 * 109.49050 * 303.15419 * 3 2 1 29 29 H 1.09001 * 109.48675 * 61.56480 * 4 3 2 30 30 H 1.08992 * 109.49145 * 181.60924 * 4 3 2 31 31 H 1.00900 * 111.00605 * 183.19784 * 5 4 3 32 32 H 1.09002 * 109.48975 * 180.72270 * 6 5 4 33 33 H 1.09005 * 109.49988 * 60.67757 * 6 5 4 34 34 H 1.08994 * 109.47058 * 210.00500 * 12 11 9 35 35 H 1.09001 * 109.46725 * 330.00021 * 12 11 9 36 36 H 0.96997 * 119.99692 * 179.97438 * 16 15 13 37 37 H 1.08999 * 115.54646 * 329.51858 * 21 11 9 38 38 H 1.09003 * 117.49985 * 359.97438 * 22 21 11 39 39 H 1.09001 * 117.49984 * 145.01899 * 22 21 11 40 40 H 1.09005 * 117.49595 * 214.97853 * 23 21 11 41 41 H 1.09000 * 117.50265 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5235 1.3290 -0.0803 5 7 4.0506 0.5661 1.0597 6 6 3.5235 -0.8061 1.0598 7 6 1.9957 -0.7633 1.1400 8 1 1.6938 -0.2821 2.0703 9 6 1.4500 -2.1674 1.1001 10 8 1.1354 -2.6658 0.0403 11 7 1.3117 -2.8693 2.2424 12 6 0.8848 -4.2700 2.1943 13 6 2.0958 -5.1608 2.0898 14 1 3.0844 -4.7271 2.0616 15 6 1.9415 -6.5296 2.0292 16 7 0.7375 -7.0578 2.0631 17 14 3.4425 -7.6339 1.9004 18 1 3.9090 -7.9962 3.2629 19 1 3.0867 -8.8679 1.1546 20 1 4.5252 -6.9157 1.1812 21 6 1.5881 -2.2317 3.5321 22 6 1.4997 -3.1049 4.7852 23 6 0.4169 -2.0619 4.5017 24 1 -0.3633 0.5953 -0.8377 25 1 -0.3634 -1.0231 -0.0967 26 1 -0.3633 0.4279 0.9344 27 1 1.6938 1.8773 0.9173 28 1 1.6013 1.9129 -0.8603 29 1 3.8254 0.8478 -1.0106 30 1 3.9179 2.3447 -0.0516 31 1 5.0596 0.5663 1.0596 32 1 3.9178 -1.3471 1.9200 33 1 3.8253 -1.3119 0.1426 34 1 0.3323 -4.5128 3.1019 35 1 0.2438 -4.4248 1.3264 36 1 0.6290 -8.0207 2.0200 37 1 2.3462 -1.4486 3.5164 38 1 1.2355 -4.1538 4.6502 39 1 2.1998 -2.8965 5.5943 40 1 0.4046 -1.1672 5.1242 41 1 -0.5595 -2.4241 4.1799 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686118174.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:03 Heat of formation + Delta-G solvation = 15.845043 kcal Electronic energy + Delta-G solvation = -21745.584377 eV Core-core repulsion = 18661.860542 eV Total energy + Delta-G solvation = -3083.723836 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.01018 -38.06274 -36.60402 -34.29819 -33.21724 -32.07096 -31.04369 -28.01885 -27.09774 -24.24060 -23.46225 -22.78657 -22.03841 -21.58712 -19.93752 -18.24407 -17.19404 -16.42463 -16.23365 -15.46763 -15.05841 -14.75508 -14.54934 -14.45980 -14.11623 -13.92290 -13.64226 -13.27738 -12.76671 -12.33231 -12.24884 -11.91017 -11.58077 -11.47638 -11.35697 -11.03558 -10.96299 -10.85103 -10.77506 -10.54775 -10.45341 -10.14397 -10.08195 -9.52082 -8.83562 -8.59318 -8.43638 -8.13055 -7.53280 -6.04578 -4.09097 3.24959 3.29819 3.36795 3.40777 3.62189 4.09660 4.22261 4.35514 4.46452 4.87340 4.99598 5.11787 5.19646 5.27676 5.29896 5.31453 5.35820 5.38639 5.49601 5.60620 5.64725 5.70207 5.81880 5.91188 5.98733 6.08372 6.14193 6.22819 6.41926 6.69623 6.80257 6.95431 7.06578 7.18761 7.29323 7.43686 7.54156 7.92170 8.22637 8.41071 8.90058 9.09569 9.55866 11.03310 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.020500 B = 0.006117 C = 0.005745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.549623 B = 4576.569815 C = 4872.512366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.522 5.522 3 C 0.057 3.943 4 C 0.056 3.944 5 N -0.690 5.690 6 C 0.070 3.930 7 C 0.072 3.928 8 H 0.065 0.935 9 C 0.517 3.483 10 O -0.520 6.520 11 N -0.570 5.570 12 C 0.244 3.756 13 C -0.521 4.521 14 H 0.057 0.943 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.072 3.928 22 C -0.171 4.171 23 C -0.204 4.204 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.021 0.979 27 H 0.039 0.961 28 H 0.080 0.920 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.345 0.655 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.035 0.965 35 H 0.044 0.956 36 H 0.263 0.737 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.182 16.327 1.992 16.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.248 5.248 3 C -0.071 4.071 4 C -0.073 4.073 5 N -0.322 5.322 6 C -0.060 4.060 7 C -0.041 4.041 8 H 0.083 0.917 9 C 0.302 3.698 10 O -0.395 6.395 11 N -0.301 5.301 12 C 0.125 3.875 13 C -0.560 4.560 14 H 0.076 0.924 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.725 3.275 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.034 4.034 22 C -0.208 4.208 23 C -0.243 4.243 24 H 0.085 0.915 25 H 0.102 0.898 26 H 0.040 0.960 27 H 0.058 0.942 28 H 0.098 0.902 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.163 0.837 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.134 0.866 38 H 0.136 0.864 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.584 15.851 1.392 16.120 hybrid contribution 1.030 -0.697 0.071 1.246 sum 3.614 15.154 1.463 15.647 Atomic orbital electron populations 1.22452 0.86616 1.03860 0.99666 1.61844 1.08405 1.12544 1.41976 1.22184 0.94627 0.89431 1.00862 1.22013 0.94814 0.98131 0.92361 1.60518 1.13170 1.14101 1.44381 1.21844 0.92552 0.89400 1.02173 1.21703 0.95493 0.93555 0.93322 0.91736 1.19925 0.79277 0.86487 0.84126 1.90668 1.49045 1.70550 1.29243 1.47772 1.65500 1.13764 1.03088 1.19313 0.96027 0.73737 0.98389 1.21390 0.93012 0.91010 1.50621 0.92449 1.24922 0.96039 0.97967 0.95144 1.69935 1.21134 1.11884 1.50445 0.86512 0.82943 0.80057 0.78017 1.20630 1.21135 1.19927 1.21543 0.99570 0.99921 0.82339 1.23316 1.01038 0.98929 0.97559 1.23400 0.95541 1.01326 1.03989 0.91479 0.89818 0.96040 0.94231 0.90206 0.94052 0.90359 0.83678 0.89623 0.93265 0.94716 0.93809 0.92732 0.86626 0.86414 0.88829 0.89009 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.14 60.06 0.55 0.88 16 2 N -0.52 -8.31 4.52 -236.13 -1.07 -9.38 16 3 C 0.06 0.70 5.62 -3.76 -0.02 0.68 16 4 C 0.06 0.63 6.72 -3.77 -0.03 0.60 16 5 N -0.69 -8.29 6.91 -113.60 -0.78 -9.07 16 6 C 0.07 1.07 5.89 -3.74 -0.02 1.05 16 7 C 0.07 1.20 1.56 -68.81 -0.11 1.09 16 8 H 0.06 1.03 6.58 -51.93 -0.34 0.69 16 9 C 0.52 11.06 5.86 -10.98 -0.06 11.00 16 10 O -0.52 -13.33 14.82 5.56 0.08 -13.25 16 11 N -0.57 -12.21 2.79 -167.48 -0.47 -12.67 16 12 C 0.24 6.33 4.58 -5.19 -0.02 6.31 16 13 C -0.52 -14.58 9.38 -34.44 -0.32 -14.90 16 14 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 17 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 21 C 0.07 1.23 5.59 -67.94 -0.38 0.85 16 22 C -0.17 -2.80 9.71 -26.73 -0.26 -3.06 16 23 C -0.20 -3.04 10.31 -26.73 -0.28 -3.32 16 24 H 0.07 0.86 8.11 -51.93 -0.42 0.44 16 25 H 0.08 1.53 6.17 -51.93 -0.32 1.21 16 26 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.84 8.12 -51.93 -0.42 0.42 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.35 3.40 8.90 -39.29 -0.35 3.05 16 32 H 0.09 1.28 7.62 -51.93 -0.40 0.88 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.03 0.91 6.21 -51.93 -0.32 0.58 16 35 H 0.04 1.30 7.36 -51.93 -0.38 0.92 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.12 1.72 6.22 -51.93 -0.32 1.40 16 38 H 0.12 2.32 6.28 -51.93 -0.33 2.00 16 39 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 LS Contribution 325.83 15.07 4.91 4.91 Total: -1.00 -32.18 325.83 -9.19 -41.38 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.53 Total: 4.15 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -1.05 Total: 2.82 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: -1.58 Total: -56.78 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.08 Total: -13.25 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.18 -9.19 -41.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686118174.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.220 kcal (2) G-P(sol) polarization free energy of solvation -32.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds