Wall clock time and date at job start Mon Mar 30 2020 04:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46956 * 111.00162 * 2 1 4 4 C 1.53058 * 109.36530 * 183.18808 * 3 2 1 5 5 N 1.46951 * 109.38403 * 301.59045 * 4 3 2 6 6 C 1.46995 * 110.85987 * 59.30410 * 5 4 3 7 7 C 1.46958 * 111.00188 * 123.80240 * 2 1 3 8 8 H 1.09001 * 109.48561 * 296.77512 * 7 2 1 9 9 C 1.50698 * 109.48840 * 56.81735 * 7 2 1 10 10 O 1.21272 * 119.99988 * 27.47770 * 9 7 2 11 11 N 1.34782 * 119.99703 * 207.47204 * 9 7 2 12 12 C 1.46508 * 119.99694 * 184.96868 * 11 9 7 13 13 C 1.50696 * 109.47084 * 90.00000 * 12 11 9 14 14 H 1.08000 * 120.00101 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00166 * 180.02562 * 13 12 11 16 16 N 1.31523 * 119.99715 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00487 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47638 * 89.99601 * 17 15 13 19 19 H 1.48503 * 109.47143 * 209.99994 * 17 15 13 20 20 H 1.48503 * 109.46853 * 329.99658 * 17 15 13 21 21 C 1.46499 * 120.00390 * 4.97007 * 11 9 7 22 22 C 1.52995 * 117.49859 * 183.81680 * 21 11 9 23 23 C 1.52996 * 117.49837 * 115.18986 * 21 11 9 24 24 H 1.09001 * 109.46821 * 54.59842 * 1 2 3 25 25 H 1.08997 * 109.47357 * 174.60244 * 1 2 3 26 26 H 1.09003 * 109.46813 * 294.60608 * 1 2 3 27 27 H 1.08995 * 109.49051 * 63.22215 * 3 2 1 28 28 H 1.09002 * 109.49050 * 303.15419 * 3 2 1 29 29 H 1.09001 * 109.48675 * 61.56480 * 4 3 2 30 30 H 1.08992 * 109.49145 * 181.60924 * 4 3 2 31 31 H 1.00900 * 111.00605 * 183.19784 * 5 4 3 32 32 H 1.09002 * 109.48975 * 180.72270 * 6 5 4 33 33 H 1.09005 * 109.49988 * 60.67757 * 6 5 4 34 34 H 1.08994 * 109.47058 * 210.00500 * 12 11 9 35 35 H 1.09001 * 109.46725 * 330.00021 * 12 11 9 36 36 H 0.96997 * 119.99692 * 179.97438 * 16 15 13 37 37 H 1.08999 * 115.54646 * 329.51858 * 21 11 9 38 38 H 1.09003 * 117.49985 * 359.97438 * 22 21 11 39 39 H 1.09001 * 117.49984 * 145.01899 * 22 21 11 40 40 H 1.09005 * 117.49595 * 214.97853 * 23 21 11 41 41 H 1.09000 * 117.50265 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5235 1.3290 -0.0803 5 7 4.0506 0.5661 1.0597 6 6 3.5235 -0.8061 1.0598 7 6 1.9957 -0.7633 1.1400 8 1 1.6938 -0.2821 2.0703 9 6 1.4500 -2.1674 1.1001 10 8 1.1354 -2.6658 0.0403 11 7 1.3117 -2.8693 2.2424 12 6 0.8848 -4.2700 2.1943 13 6 2.0958 -5.1608 2.0898 14 1 3.0844 -4.7271 2.0616 15 6 1.9415 -6.5296 2.0292 16 7 0.7375 -7.0578 2.0631 17 14 3.4425 -7.6339 1.9004 18 1 3.9090 -7.9962 3.2629 19 1 3.0867 -8.8679 1.1546 20 1 4.5252 -6.9157 1.1812 21 6 1.5881 -2.2317 3.5321 22 6 1.4997 -3.1049 4.7852 23 6 0.4169 -2.0619 4.5017 24 1 -0.3633 0.5953 -0.8377 25 1 -0.3634 -1.0231 -0.0967 26 1 -0.3633 0.4279 0.9344 27 1 1.6938 1.8773 0.9173 28 1 1.6013 1.9129 -0.8603 29 1 3.8254 0.8478 -1.0106 30 1 3.9179 2.3447 -0.0516 31 1 5.0596 0.5663 1.0596 32 1 3.9178 -1.3471 1.9200 33 1 3.8253 -1.3119 0.1426 34 1 0.3323 -4.5128 3.1019 35 1 0.2438 -4.4248 1.3264 36 1 0.6290 -8.0207 2.0200 37 1 2.3462 -1.4486 3.5164 38 1 1.2355 -4.1538 4.6502 39 1 2.1998 -2.8965 5.5943 40 1 0.4046 -1.1672 5.1242 41 1 -0.5595 -2.4241 4.1799 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686118174.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:03 Heat of formation + Delta-G solvation = -9.320506 kcal Electronic energy + Delta-G solvation = -21746.675638 eV Core-core repulsion = 18661.860542 eV Total energy + Delta-G solvation = -3084.815096 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.47817 -39.38248 -38.14079 -35.44635 -35.19895 -33.83203 -32.35460 -29.61261 -28.60835 -25.81264 -24.70016 -24.38751 -23.36028 -22.98808 -21.14618 -19.75599 -18.69788 -18.51722 -17.55649 -16.99631 -16.53484 -16.23321 -15.82360 -15.72517 -15.52691 -15.30983 -14.93791 -14.77329 -14.25967 -14.00663 -13.70850 -13.39607 -13.01020 -12.97132 -12.81137 -12.66309 -12.50832 -12.23366 -12.19806 -12.10861 -12.07211 -11.85903 -11.49143 -11.39806 -10.64314 -10.49895 -9.62365 -9.32714 -9.25294 -8.22468 -6.36991 1.35241 1.38238 1.48112 1.65014 2.08973 2.38740 2.88352 3.03931 3.06456 3.16513 3.60512 3.83646 3.89732 3.99913 4.02502 4.05984 4.19493 4.29736 4.38838 4.46777 4.54199 4.63925 4.78164 4.81705 4.83155 4.93859 4.95697 5.00784 5.03979 5.11061 5.24401 5.37773 5.54338 5.72984 5.80424 5.89608 6.05005 6.07522 6.41406 6.68849 6.75574 7.26952 7.44084 8.84413 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.020500 B = 0.006117 C = 0.005745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.549623 B = 4576.569815 C = 4872.512366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.546 5.546 3 C 0.056 3.944 4 C 0.055 3.945 5 N -0.678 5.678 6 C 0.077 3.923 7 C 0.087 3.913 8 H 0.082 0.918 9 C 0.509 3.491 10 O -0.576 6.576 11 N -0.576 5.576 12 C 0.263 3.737 13 C -0.533 4.533 14 H 0.053 0.947 15 C 0.009 3.991 16 N -0.929 5.929 17 Si 0.966 3.034 18 H -0.262 1.262 19 H -0.282 1.282 20 H -0.273 1.273 21 C 0.052 3.948 22 C -0.175 4.175 23 C -0.179 4.179 24 H 0.089 0.911 25 H 0.040 0.960 26 H 0.036 0.964 27 H 0.050 0.950 28 H 0.099 0.901 29 H 0.029 0.971 30 H 0.114 0.886 31 H 0.360 0.640 32 H 0.088 0.912 33 H 0.020 0.980 34 H 0.027 0.973 35 H -0.008 1.008 36 H 0.266 0.734 37 H 0.148 0.852 38 H 0.076 0.924 39 H 0.129 0.871 40 H 0.135 0.865 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.074 18.926 3.374 19.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.273 5.273 3 C -0.071 4.071 4 C -0.074 4.074 5 N -0.312 5.312 6 C -0.054 4.054 7 C -0.025 4.025 8 H 0.100 0.900 9 C 0.297 3.703 10 O -0.455 6.455 11 N -0.306 5.306 12 C 0.142 3.858 13 C -0.572 4.572 14 H 0.071 0.929 15 C -0.190 4.190 16 N -0.569 5.569 17 Si 0.790 3.210 18 H -0.187 1.187 19 H -0.208 1.208 20 H -0.198 1.198 21 C -0.052 4.052 22 C -0.212 4.212 23 C -0.218 4.218 24 H 0.108 0.892 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.117 0.883 29 H 0.048 0.952 30 H 0.132 0.868 31 H 0.180 0.820 32 H 0.107 0.893 33 H 0.038 0.962 34 H 0.045 0.955 35 H 0.010 0.990 36 H 0.075 0.925 37 H 0.165 0.835 38 H 0.095 0.905 39 H 0.147 0.853 40 H 0.153 0.847 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.497 18.497 2.816 19.243 hybrid contribution 0.381 -1.468 -0.375 1.562 sum 4.878 17.029 2.441 17.881 Atomic orbital electron populations 1.22356 0.86624 1.01700 1.01407 1.61824 1.08729 1.14908 1.41795 1.22346 0.95250 0.87225 1.02283 1.22142 0.94223 0.99638 0.91412 1.60518 1.14307 1.11627 1.44699 1.21688 0.91473 0.91286 1.00907 1.21528 0.96213 0.90189 0.94588 0.90025 1.20867 0.78125 0.88264 0.83079 1.90628 1.51368 1.72240 1.31282 1.47732 1.65179 1.12234 1.05407 1.18717 0.94757 0.76734 0.95545 1.21602 0.93158 0.91770 1.50663 0.92902 1.25830 0.99140 0.99514 0.94547 1.70060 1.23331 1.12368 1.51128 0.85442 0.78976 0.77785 0.78793 1.18673 1.20793 1.19775 1.21984 1.02000 1.00818 0.80364 1.23287 1.02761 0.96954 0.98217 1.23451 0.93689 1.02069 1.02560 0.89194 0.94074 0.94589 0.93156 0.88256 0.95216 0.86815 0.81968 0.89340 0.96162 0.95516 0.98952 0.92465 0.83523 0.90535 0.85324 0.84653 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 9.14 127.69 1.17 1.98 16 2 N -0.55 -16.83 4.52 -900.96 -4.08 -20.90 16 3 C 0.06 1.20 5.62 86.31 0.49 1.68 16 4 C 0.06 1.05 6.72 86.31 0.58 1.63 16 5 N -0.68 -14.17 6.91 -513.34 -3.54 -17.71 16 6 C 0.08 2.25 5.89 86.30 0.51 2.76 16 7 C 0.09 2.85 1.56 44.18 0.07 2.92 16 8 H 0.08 2.39 6.58 -2.39 -0.02 2.37 16 9 C 0.51 22.60 5.86 87.66 0.51 23.11 16 10 O -0.58 -31.54 14.82 -3.01 -0.04 -31.59 16 11 N -0.58 -25.48 2.79 -802.16 -2.24 -27.72 16 12 C 0.26 14.53 4.58 85.63 0.39 14.92 16 13 C -0.53 -30.99 9.38 25.60 0.24 -30.75 16 14 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 15 C 0.01 0.49 5.46 84.65 0.46 0.96 16 16 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 17 Si 0.97 45.33 29.54 68.60 2.03 47.36 16 18 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 21 C 0.05 1.72 5.59 44.99 0.25 1.97 16 22 C -0.17 -5.53 9.71 30.59 0.30 -5.23 16 23 C -0.18 -4.99 10.31 30.59 0.32 -4.68 16 24 H 0.09 2.20 8.11 -2.39 -0.02 2.18 16 25 H 0.04 1.58 6.17 -2.39 -0.01 1.56 16 26 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.10 1.74 8.12 -2.39 -0.02 1.72 16 29 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.36 5.90 8.90 -89.69 -0.80 5.10 16 32 H 0.09 2.50 7.62 -2.39 -0.02 2.48 16 33 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.03 1.50 6.21 -2.39 -0.01 1.49 16 35 H -0.01 -0.49 7.36 -2.39 -0.02 -0.51 16 36 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 37 H 0.15 3.90 6.22 -2.39 -0.01 3.89 16 38 H 0.08 3.11 6.28 -2.39 -0.01 3.09 16 39 H 0.13 3.13 8.14 -2.39 -0.02 3.11 16 40 H 0.14 2.65 8.14 -2.38 -0.02 2.63 16 41 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -75.16 325.83 -2.08 -77.25 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 0.22 Total: 18.56 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: 5.28 Total: 11.26 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -9.57 Total: -122.84 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.04 Total: -31.59 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -75.16 -2.08 -77.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686118174.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.925 kcal (2) G-P(sol) polarization free energy of solvation -75.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds