Wall clock time and date at job start Mon Mar 30 2020 04:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46950 * 111.00163 * 2 1 4 4 C 1.53047 * 109.36625 * 176.81201 * 3 2 1 5 5 N 1.46957 * 109.36761 * 58.39772 * 4 3 2 6 6 C 1.46950 * 110.87687 * 300.68334 * 5 4 3 7 7 C 1.46957 * 111.00269 * 236.19693 * 2 1 3 8 8 H 1.09004 * 109.48781 * 63.19640 * 7 2 1 9 9 C 1.50700 * 109.48832 * 303.16015 * 7 2 1 10 10 O 1.21279 * 119.99940 * 331.20431 * 9 7 2 11 11 N 1.34782 * 120.00064 * 151.20610 * 9 7 2 12 12 C 1.46495 * 119.99837 * 184.88962 * 11 9 7 13 13 C 1.53004 * 109.47069 * 175.12297 * 12 11 9 14 14 C 1.50692 * 115.54966 * 65.30560 * 13 12 11 15 15 H 1.07998 * 120.00214 * 271.08641 * 14 13 12 16 16 C 1.37879 * 120.00072 * 91.08941 * 14 13 12 17 17 N 1.31516 * 119.99949 * 3.85074 * 16 14 13 18 18 Si 1.86799 * 120.00370 * 183.84744 * 16 14 13 19 19 H 1.48499 * 109.47012 * 59.99919 * 18 16 14 20 20 H 1.48489 * 109.47294 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46920 * 300.00344 * 18 16 14 22 22 C 1.53004 * 117.49804 * 279.63649 * 13 12 11 23 23 C 1.52999 * 117.49841 * 210.97984 * 13 12 11 24 24 H 1.09003 * 109.46836 * 180.09388 * 1 2 3 25 25 H 1.08998 * 109.46645 * 60.09213 * 1 2 3 26 26 H 1.08999 * 109.47115 * 300.09020 * 1 2 3 27 27 H 1.09000 * 109.48812 * 296.77785 * 3 2 1 28 28 H 1.09004 * 109.49090 * 56.83794 * 3 2 1 29 29 H 1.08999 * 109.48752 * 298.42885 * 4 3 2 30 30 H 1.09007 * 109.50629 * 178.37939 * 4 3 2 31 31 H 1.00896 * 110.99750 * 176.81234 * 5 4 3 32 32 H 1.09000 * 109.49047 * 299.34855 * 6 5 4 33 33 H 1.09006 * 109.50296 * 179.29684 * 6 5 4 34 34 H 0.96991 * 119.99873 * 4.89726 * 11 9 7 35 35 H 1.09000 * 109.47744 * 295.12558 * 12 11 9 36 36 H 1.09004 * 109.47390 * 55.12452 * 12 11 9 37 37 H 0.96996 * 120.00126 * 185.01232 * 17 16 14 38 38 H 1.09001 * 117.49609 * 0.02562 * 22 13 12 39 39 H 1.08995 * 117.50080 * 145.01414 * 22 13 12 40 40 H 1.08999 * 117.49632 * 214.98002 * 23 13 12 41 41 H 1.08997 * 117.50313 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 0.0803 5 7 4.0502 0.5657 -1.0597 6 6 3.5235 -0.8061 -1.0596 7 6 1.9958 -0.7633 -1.1400 8 1 1.6935 -0.2824 -2.0704 9 6 1.4505 -2.1676 -1.0998 10 8 1.1587 -2.6746 -0.0374 11 7 1.2872 -2.8601 -2.2445 12 6 0.6582 -4.1829 -2.2169 13 6 0.4844 -4.6950 -3.6482 14 6 1.7614 -4.9647 -4.4015 15 1 2.2285 -4.1759 -4.9723 16 6 2.3333 -6.2187 -4.3620 17 7 1.7257 -7.1990 -3.7300 18 14 3.9711 -6.5253 -5.2063 19 1 5.0063 -5.6401 -4.6148 20 1 4.3666 -7.9443 -5.0190 21 1 3.8421 -6.2353 -6.6570 22 6 -0.7092 -4.1677 -4.4471 23 6 -0.7095 -5.6089 -3.9314 24 1 -0.3633 -1.0277 0.0017 25 1 -0.3632 0.5124 -0.8908 26 1 -0.3633 0.5152 0.8892 27 1 1.6939 1.8773 -0.9174 28 1 1.6013 1.9129 0.8602 29 1 3.8254 0.8479 1.0106 30 1 3.9181 2.3447 0.0514 31 1 5.0592 0.5658 -1.0596 32 1 3.8254 -1.3115 -0.1423 33 1 3.9179 -1.3474 -1.9197 34 1 1.5862 -2.4828 -3.0865 35 1 1.2893 -4.8738 -1.6579 36 1 -0.3172 -4.1115 -1.7356 37 1 2.1608 -8.0611 -3.6396 38 1 -1.3704 -3.4556 -3.9531 39 1 -0.5709 -4.0162 -5.5175 40 1 -0.5714 -6.4051 -4.6629 41 1 -1.3709 -5.8457 -3.0981 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686121019.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:56 Heat of formation + Delta-G solvation = 1.017656 kcal Electronic energy + Delta-G solvation = -21153.729986 eV Core-core repulsion = 18069.363186 eV Total energy + Delta-G solvation = -3084.366800 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.01054 -37.97692 -36.59213 -34.43082 -33.30648 -31.95390 -31.19246 -27.94659 -26.43656 -25.30486 -23.78607 -23.48189 -21.17957 -20.43094 -19.62287 -19.11040 -17.28414 -16.18972 -16.14988 -15.52606 -15.04999 -14.76992 -14.62550 -14.41977 -14.18039 -13.88296 -13.82136 -13.34570 -12.79365 -12.49750 -12.25609 -12.02274 -11.75920 -11.58079 -11.53472 -11.09028 -11.00914 -10.93137 -10.85890 -10.55840 -10.22655 -9.58570 -9.23609 -9.09873 -8.68793 -8.47143 -8.33834 -8.23716 -8.10538 -6.09175 -4.18902 3.06680 3.26081 3.32255 3.33394 3.52155 4.00004 4.21755 4.34699 4.80955 4.94807 5.05547 5.18018 5.18582 5.24353 5.27880 5.44226 5.49173 5.55251 5.60201 5.71829 5.81334 5.93622 6.02490 6.06020 6.33596 6.44124 6.53908 6.70146 6.71163 6.82162 6.89906 7.00601 7.13101 7.20106 7.25853 7.38184 7.57792 7.78629 8.26113 8.32302 8.81795 8.84752 9.48350 10.98153 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.021973 B = 0.005340 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.011779 B = 5242.516271 C = 6056.077399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.522 5.522 3 C 0.057 3.943 4 C 0.056 3.944 5 N -0.690 5.690 6 C 0.069 3.931 7 C 0.072 3.928 8 H 0.066 0.934 9 C 0.508 3.492 10 O -0.537 6.537 11 N -0.703 5.703 12 C 0.165 3.835 13 C 0.020 3.980 14 C -0.499 4.499 15 H 0.059 0.941 16 C 0.074 3.926 17 N -0.875 5.875 18 Si 0.889 3.111 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.213 4.213 23 C -0.136 4.136 24 H 0.080 0.920 25 H 0.023 0.977 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.081 0.919 29 H 0.041 0.959 30 H 0.079 0.921 31 H 0.347 0.653 32 H 0.048 0.952 33 H 0.089 0.911 34 H 0.401 0.599 35 H 0.065 0.935 36 H 0.039 0.961 37 H 0.262 0.738 38 H 0.063 0.937 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.391 14.900 4.429 15.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.247 5.247 3 C -0.071 4.071 4 C -0.073 4.073 5 N -0.321 5.321 6 C -0.061 4.061 7 C -0.040 4.040 8 H 0.083 0.917 9 C 0.292 3.708 10 O -0.414 6.414 11 N -0.353 5.353 12 C 0.042 3.958 13 C 0.019 3.981 14 C -0.536 4.536 15 H 0.077 0.923 16 C -0.130 4.130 17 N -0.511 5.511 18 Si 0.717 3.283 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.250 4.250 23 C -0.174 4.174 24 H 0.099 0.901 25 H 0.041 0.959 26 H 0.087 0.913 27 H 0.060 0.940 28 H 0.099 0.901 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.165 0.835 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.235 0.765 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.822 14.286 5.179 15.218 hybrid contribution 1.250 -0.132 -0.836 1.510 sum 2.072 14.154 4.343 14.950 Atomic orbital electron populations 1.22455 0.86586 1.03459 1.00156 1.61869 1.08406 1.12804 1.41639 1.22194 0.94678 0.89210 1.01058 1.22022 0.94739 0.98272 0.92311 1.60482 1.13328 1.13971 1.44365 1.21868 0.92305 0.89707 1.02203 1.21638 0.95751 0.92963 0.93673 0.91667 1.20184 0.79141 0.87001 0.84517 1.90663 1.50763 1.70210 1.29719 1.46041 1.60476 1.19795 1.08949 1.21015 0.95098 0.81634 0.98091 1.19056 0.89602 0.98866 0.90578 1.20301 1.06943 0.95827 1.30561 0.92287 1.24978 0.97178 0.95757 0.95109 1.69994 1.36564 1.02808 1.41757 0.86710 0.84257 0.77280 0.80065 1.20198 1.21267 1.20205 1.23046 1.04697 0.97695 0.99559 1.22440 1.01107 0.92026 1.01809 0.90097 0.95869 0.91284 0.94029 0.90095 0.94056 0.90246 0.83499 0.93337 0.89318 0.76506 0.91646 0.94242 0.92813 0.91895 0.90403 0.89123 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.23 60.07 0.55 0.84 16 2 N -0.52 -7.47 4.53 -236.13 -1.07 -8.54 16 3 C 0.06 0.64 5.62 -3.77 -0.02 0.61 16 4 C 0.06 0.57 6.72 -3.77 -0.03 0.55 16 5 N -0.69 -7.69 6.90 -113.64 -0.78 -8.47 16 6 C 0.07 0.94 5.98 -3.77 -0.02 0.92 16 7 C 0.07 1.08 2.35 -68.81 -0.16 0.92 16 8 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 9 C 0.51 9.44 5.90 -10.98 -0.06 9.38 16 10 O -0.54 -11.87 15.42 5.56 0.09 -11.78 16 11 N -0.70 -13.40 5.48 -60.29 -0.33 -13.73 16 12 C 0.16 3.66 5.51 -4.04 -0.02 3.64 16 13 C 0.02 0.46 1.58 -155.66 -0.25 0.21 16 14 C -0.50 -12.69 8.63 -34.44 -0.30 -12.98 16 15 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 16 C 0.07 1.94 5.42 -17.82 -0.10 1.84 16 17 N -0.88 -24.07 12.16 55.43 0.67 -23.40 16 18 Si 0.89 20.39 29.54 -169.99 -5.02 15.36 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 C -0.21 -4.43 9.96 -26.69 -0.27 -4.69 16 23 C -0.14 -3.12 8.91 -26.70 -0.24 -3.36 16 24 H 0.08 1.31 6.08 -51.93 -0.32 0.99 16 25 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.35 3.16 8.90 -39.29 -0.35 2.81 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.40 7.08 8.34 -40.82 -0.34 6.74 16 35 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 36 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 37 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 40 H 0.09 2.26 7.84 -51.93 -0.41 1.85 16 41 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 332.38 15.07 5.01 5.01 Total: -1.00 -29.31 332.38 -9.22 -38.53 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -6.87 Total: 9.12 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -0.91 Total: -2.11 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -1.51 Total: -54.13 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: 0.09 Total: -11.78 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.31 -9.22 -38.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686121019.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.550 kcal (2) G-P(sol) polarization free energy of solvation -29.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds