Wall clock time and date at job start Mon Mar 30 2020 04:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46950 * 111.00163 * 2 1 4 4 C 1.53047 * 109.36625 * 176.81201 * 3 2 1 5 5 N 1.46957 * 109.36761 * 58.39772 * 4 3 2 6 6 C 1.46950 * 110.87687 * 300.68334 * 5 4 3 7 7 C 1.46957 * 111.00269 * 236.19693 * 2 1 3 8 8 H 1.09004 * 109.48781 * 63.19640 * 7 2 1 9 9 C 1.50700 * 109.48832 * 303.16015 * 7 2 1 10 10 O 1.21279 * 119.99940 * 331.20431 * 9 7 2 11 11 N 1.34782 * 120.00064 * 151.20610 * 9 7 2 12 12 C 1.46495 * 119.99837 * 184.88962 * 11 9 7 13 13 C 1.53004 * 109.47069 * 175.12297 * 12 11 9 14 14 C 1.50692 * 115.54966 * 65.30560 * 13 12 11 15 15 H 1.07998 * 120.00214 * 271.08641 * 14 13 12 16 16 C 1.37879 * 120.00072 * 91.08941 * 14 13 12 17 17 N 1.31516 * 119.99949 * 3.85074 * 16 14 13 18 18 Si 1.86799 * 120.00370 * 183.84744 * 16 14 13 19 19 H 1.48499 * 109.47012 * 59.99919 * 18 16 14 20 20 H 1.48489 * 109.47294 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46920 * 300.00344 * 18 16 14 22 22 C 1.53004 * 117.49804 * 279.63649 * 13 12 11 23 23 C 1.52999 * 117.49841 * 210.97984 * 13 12 11 24 24 H 1.09003 * 109.46836 * 180.09388 * 1 2 3 25 25 H 1.08998 * 109.46645 * 60.09213 * 1 2 3 26 26 H 1.08999 * 109.47115 * 300.09020 * 1 2 3 27 27 H 1.09000 * 109.48812 * 296.77785 * 3 2 1 28 28 H 1.09004 * 109.49090 * 56.83794 * 3 2 1 29 29 H 1.08999 * 109.48752 * 298.42885 * 4 3 2 30 30 H 1.09007 * 109.50629 * 178.37939 * 4 3 2 31 31 H 1.00896 * 110.99750 * 176.81234 * 5 4 3 32 32 H 1.09000 * 109.49047 * 299.34855 * 6 5 4 33 33 H 1.09006 * 109.50296 * 179.29684 * 6 5 4 34 34 H 0.96991 * 119.99873 * 4.89726 * 11 9 7 35 35 H 1.09000 * 109.47744 * 295.12558 * 12 11 9 36 36 H 1.09004 * 109.47390 * 55.12452 * 12 11 9 37 37 H 0.96996 * 120.00126 * 185.01232 * 17 16 14 38 38 H 1.09001 * 117.49609 * 0.02562 * 22 13 12 39 39 H 1.08995 * 117.50080 * 145.01414 * 22 13 12 40 40 H 1.08999 * 117.49632 * 214.98002 * 23 13 12 41 41 H 1.08997 * 117.50313 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5235 1.3290 0.0803 5 7 4.0502 0.5657 -1.0597 6 6 3.5235 -0.8061 -1.0596 7 6 1.9958 -0.7633 -1.1400 8 1 1.6935 -0.2824 -2.0704 9 6 1.4505 -2.1676 -1.0998 10 8 1.1587 -2.6746 -0.0374 11 7 1.2872 -2.8601 -2.2445 12 6 0.6582 -4.1829 -2.2169 13 6 0.4844 -4.6950 -3.6482 14 6 1.7614 -4.9647 -4.4015 15 1 2.2285 -4.1759 -4.9723 16 6 2.3333 -6.2187 -4.3620 17 7 1.7257 -7.1990 -3.7300 18 14 3.9711 -6.5253 -5.2063 19 1 5.0063 -5.6401 -4.6148 20 1 4.3666 -7.9443 -5.0190 21 1 3.8421 -6.2353 -6.6570 22 6 -0.7092 -4.1677 -4.4471 23 6 -0.7095 -5.6089 -3.9314 24 1 -0.3633 -1.0277 0.0017 25 1 -0.3632 0.5124 -0.8908 26 1 -0.3633 0.5152 0.8892 27 1 1.6939 1.8773 -0.9174 28 1 1.6013 1.9129 0.8602 29 1 3.8254 0.8479 1.0106 30 1 3.9181 2.3447 0.0514 31 1 5.0592 0.5658 -1.0596 32 1 3.8254 -1.3115 -0.1423 33 1 3.9179 -1.3474 -1.9197 34 1 1.5862 -2.4828 -3.0865 35 1 1.2893 -4.8738 -1.6579 36 1 -0.3172 -4.1115 -1.7356 37 1 2.1608 -8.0611 -3.6396 38 1 -1.3704 -3.4556 -3.9531 39 1 -0.5709 -4.0162 -5.5175 40 1 -0.5714 -6.4051 -4.6629 41 1 -1.3709 -5.8457 -3.0981 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686121019.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:56 Heat of formation + Delta-G solvation = -21.676320 kcal Electronic energy + Delta-G solvation = -21154.714071 eV Core-core repulsion = 18069.363186 eV Total energy + Delta-G solvation = -3085.350884 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.33222 -39.31992 -38.29971 -35.45443 -34.94131 -33.92473 -32.28372 -29.03821 -28.10110 -27.14620 -24.94546 -24.52690 -22.93708 -21.67331 -21.32790 -20.52440 -18.65143 -17.94309 -17.39164 -16.79646 -16.71473 -16.27241 -15.79230 -15.62921 -15.56431 -15.29166 -15.12522 -14.63052 -14.47782 -13.82504 -13.76998 -13.45211 -13.11557 -12.99515 -12.90846 -12.77287 -12.54005 -12.39028 -12.08350 -12.01740 -11.86392 -11.39917 -10.99177 -10.81366 -10.39689 -10.04537 -9.85608 -9.61871 -9.32487 -8.09358 -6.23313 1.44454 1.45338 1.51895 1.60461 2.15777 2.43545 2.90294 3.18400 3.22240 3.51365 3.78110 3.89338 3.99301 4.06407 4.23176 4.32222 4.38875 4.48035 4.54353 4.55951 4.62908 4.64431 4.71678 4.77739 4.93388 4.95200 4.97803 5.01886 5.03984 5.29843 5.56917 5.57587 5.71016 5.74894 5.77447 5.88466 6.03737 6.36476 6.40553 6.73741 6.84676 7.33300 7.46506 8.97567 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.021973 B = 0.005340 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.011779 B = 5242.516271 C = 6056.077399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.056 3.944 4 C 0.055 3.945 5 N -0.685 5.685 6 C 0.074 3.926 7 C 0.082 3.918 8 H 0.078 0.922 9 C 0.510 3.490 10 O -0.575 6.575 11 N -0.698 5.698 12 C 0.182 3.818 13 C -0.001 4.001 14 C -0.504 4.504 15 H 0.064 0.936 16 C 0.025 3.975 17 N -0.908 5.908 18 Si 0.948 3.052 19 H -0.271 1.271 20 H -0.292 1.292 21 H -0.269 1.269 22 C -0.179 4.179 23 C -0.148 4.148 24 H 0.048 0.952 25 H 0.036 0.964 26 H 0.087 0.913 27 H 0.047 0.953 28 H 0.100 0.900 29 H 0.033 0.967 30 H 0.110 0.890 31 H 0.360 0.640 32 H 0.028 0.972 33 H 0.090 0.910 34 H 0.410 0.590 35 H 0.025 0.975 36 H 0.038 0.962 37 H 0.258 0.742 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.047 17.596 3.803 18.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.072 4.072 4 C -0.074 4.074 5 N -0.318 5.318 6 C -0.057 4.057 7 C -0.031 4.031 8 H 0.096 0.904 9 C 0.295 3.705 10 O -0.455 6.455 11 N -0.348 5.348 12 C 0.057 3.943 13 C -0.001 4.001 14 C -0.541 4.541 15 H 0.082 0.918 16 C -0.176 4.176 17 N -0.545 5.545 18 Si 0.774 3.226 19 H -0.196 1.196 20 H -0.218 1.218 21 H -0.194 1.194 22 C -0.216 4.216 23 C -0.186 4.186 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.106 0.894 27 H 0.065 0.935 28 H 0.118 0.882 29 H 0.051 0.949 30 H 0.128 0.872 31 H 0.180 0.820 32 H 0.046 0.954 33 H 0.108 0.892 34 H 0.245 0.755 35 H 0.044 0.956 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.497 17.026 4.528 17.681 hybrid contribution 1.015 -0.926 -0.602 1.500 sum 2.512 16.100 3.926 16.761 Atomic orbital electron populations 1.22397 0.86426 1.01760 1.01732 1.61883 1.08823 1.14750 1.41319 1.22337 0.95227 0.87401 1.02203 1.22133 0.94238 0.99557 0.91470 1.60484 1.14367 1.12105 1.44833 1.21749 0.91404 0.91238 1.01281 1.21529 0.96435 0.90365 0.94749 0.90430 1.20863 0.77919 0.88232 0.83459 1.90641 1.52308 1.71430 1.31088 1.45918 1.60406 1.18672 1.09774 1.20576 0.94339 0.82400 0.96955 1.19100 0.89651 1.00195 0.91200 1.20632 1.07616 0.95766 1.30108 0.91767 1.25696 1.00198 0.95816 0.95893 1.70124 1.37860 1.03038 1.43527 0.85774 0.80722 0.76752 0.79359 1.19617 1.21790 1.19416 1.23018 1.02680 0.96260 0.99666 1.22341 1.01656 0.92720 1.01862 0.93356 0.94535 0.89449 0.93463 0.88182 0.94882 0.87230 0.82012 0.95368 0.89195 0.75456 0.95632 0.94341 0.93256 0.89487 0.89810 0.91537 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.23 127.69 1.18 1.81 16 2 N -0.54 -14.59 4.53 -900.98 -4.08 -18.67 16 3 C 0.06 1.07 5.62 86.31 0.49 1.56 16 4 C 0.06 0.96 6.72 86.31 0.58 1.54 16 5 N -0.68 -13.46 6.90 -513.45 -3.54 -17.01 16 6 C 0.07 1.92 5.98 86.31 0.52 2.43 16 7 C 0.08 2.34 2.35 44.17 0.10 2.45 16 8 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 9 C 0.51 18.94 5.90 87.66 0.52 19.45 16 10 O -0.58 -26.04 15.42 -3.02 -0.05 -26.08 16 11 N -0.70 -26.45 5.48 -463.06 -2.54 -28.99 16 12 C 0.18 8.22 5.51 86.38 0.48 8.69 16 13 C 0.00 -0.03 1.58 -52.93 -0.08 -0.12 16 14 C -0.50 -25.49 8.63 25.60 0.22 -25.27 16 15 H 0.06 3.11 7.82 -2.91 -0.02 3.09 16 16 C 0.02 1.29 5.42 84.65 0.46 1.75 16 17 N -0.91 -51.09 12.16 21.45 0.26 -50.83 16 18 Si 0.95 41.87 29.54 68.60 2.03 43.90 16 19 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 20 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 22 C -0.18 -7.17 9.96 30.62 0.30 -6.87 16 23 C -0.15 -6.82 8.91 30.62 0.27 -6.55 16 24 H 0.05 1.56 6.08 -2.39 -0.01 1.54 16 25 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.36 5.58 8.90 -89.70 -0.80 4.79 16 32 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 34 H 0.41 14.02 8.34 -92.72 -0.77 13.25 16 35 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.04 1.72 8.09 -2.38 -0.02 1.71 16 37 H 0.26 14.10 8.32 -92.71 -0.77 13.33 16 38 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 39 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 40 H 0.07 3.38 7.84 -2.39 -0.02 3.36 16 41 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -63.65 332.38 -3.44 -67.08 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: -0.55 Total: 29.70 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 5.03 Total: 0.89 kcal Atomic # 7 Polarization: -105.59 SS G_CDS: -9.90 Total: -115.49 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.05 Total: -26.08 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -63.65 -3.44 -67.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686121019.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.408 kcal (2) G-P(sol) polarization free energy of solvation -63.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds