Wall clock time and date at job start Mon Mar 30 2020 04:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46954 * 111.00200 * 2 1 4 4 C 1.53055 * 109.38301 * 183.17520 * 3 2 1 5 5 N 1.46949 * 109.36255 * 301.63519 * 4 3 2 6 6 C 1.46954 * 110.90146 * 59.28537 * 5 4 3 7 7 C 1.46953 * 110.99653 * 123.80019 * 2 1 3 8 8 H 1.09003 * 109.49197 * 296.77186 * 7 2 1 9 9 C 1.50696 * 109.49278 * 56.84293 * 7 2 1 10 10 O 1.21281 * 119.99611 * 28.01295 * 9 7 2 11 11 N 1.34777 * 120.00164 * 208.01394 * 9 7 2 12 12 C 1.46501 * 119.99980 * 185.09492 * 11 9 7 13 13 C 1.52995 * 109.47131 * 175.40623 * 12 11 9 14 14 C 1.50697 * 115.54996 * 64.67690 * 13 12 11 15 15 H 1.08003 * 119.99815 * 266.41945 * 14 13 12 16 16 C 1.37876 * 120.00418 * 86.41032 * 14 13 12 17 17 N 1.31511 * 120.00132 * 178.57900 * 16 14 13 18 18 Si 1.86802 * 119.99663 * 358.58643 * 16 14 13 19 19 H 1.48501 * 109.47076 * 91.10590 * 18 16 14 20 20 H 1.48503 * 109.47059 * 211.10068 * 18 16 14 21 21 H 1.48491 * 109.47263 * 331.09922 * 18 16 14 22 22 C 1.52998 * 117.50178 * 279.00027 * 13 12 11 23 23 C 1.52998 * 117.50007 * 210.34230 * 13 12 11 24 24 H 1.09006 * 109.46732 * 56.34635 * 1 2 3 25 25 H 1.08995 * 109.47474 * 176.34444 * 1 2 3 26 26 H 1.09001 * 109.47112 * 296.35073 * 1 2 3 27 27 H 1.08997 * 109.48939 * 303.15371 * 3 2 1 28 28 H 1.09001 * 109.49453 * 63.19883 * 3 2 1 29 29 H 1.08997 * 109.48426 * 61.58062 * 4 3 2 30 30 H 1.08999 * 109.49031 * 181.64194 * 4 3 2 31 31 H 1.00904 * 110.99472 * 183.16697 * 5 4 3 32 32 H 1.09001 * 109.48998 * 180.71887 * 6 5 4 33 33 H 1.08996 * 109.48958 * 60.65893 * 6 5 4 34 34 H 0.96991 * 120.00083 * 5.09310 * 11 9 7 35 35 H 1.08998 * 109.47110 * 295.41065 * 12 11 9 36 36 H 1.09006 * 109.47336 * 55.40554 * 12 11 9 37 37 H 0.97005 * 120.00170 * 180.02562 * 17 16 14 38 38 H 1.08998 * 117.49397 * 0.02562 * 22 13 12 39 39 H 1.08994 * 117.49794 * 145.01614 * 22 13 12 40 40 H 1.08997 * 117.50213 * 214.98076 * 23 13 12 41 41 H 1.09008 * 117.49819 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5236 1.3295 -0.0800 5 7 4.0501 0.5658 1.0598 6 6 3.5234 -0.8061 1.0598 7 6 1.9956 -0.7632 1.1401 8 1 1.6938 -0.2820 2.0704 9 6 1.4504 -2.1675 1.0999 10 8 1.1454 -2.6694 0.0388 11 7 1.3017 -2.8657 2.2432 12 6 0.8781 -4.2673 2.1957 13 6 0.8980 -4.8542 3.6085 14 6 -0.0803 -4.2448 4.5793 15 1 0.2303 -3.4336 5.2212 16 6 -1.3718 -4.7226 4.6480 17 7 -2.2174 -4.2096 5.5147 18 14 -1.9202 -6.0988 3.5102 19 1 -1.6897 -7.4087 4.1706 20 1 -3.3660 -5.9446 3.2079 21 1 -1.1413 -6.0371 2.2475 22 6 2.2470 -5.3176 4.1621 23 6 1.1941 -6.3487 3.7485 24 1 -0.3633 0.5695 -0.8555 25 1 -0.3634 -1.0255 -0.0655 26 1 -0.3633 0.4561 0.9209 27 1 1.6014 1.9128 -0.8602 28 1 1.6935 1.8776 0.9171 29 1 3.8257 0.8486 -1.0103 30 1 3.9176 2.3453 -0.0507 31 1 5.0591 0.5658 1.0598 32 1 3.9177 -1.3471 1.9200 33 1 3.8253 -1.3116 0.1425 34 1 1.4752 -2.4401 3.0973 35 1 -0.1322 -4.3280 1.7912 36 1 1.5591 -4.8313 1.5583 37 1 -3.1260 -4.5460 5.5634 38 1 3.1203 -5.2039 3.5198 39 1 2.4267 -5.1818 5.2285 40 1 0.6816 -6.8911 4.5430 41 1 1.3742 -6.9140 2.8340 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686121022.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:00 Heat of formation + Delta-G solvation = 5.147088 kcal Electronic energy + Delta-G solvation = -21236.688714 eV Core-core repulsion = 18152.500980 eV Total energy + Delta-G solvation = -3084.187734 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.06656 -38.11172 -36.91662 -34.45473 -33.42262 -32.15976 -31.25453 -27.97253 -26.72021 -25.35798 -23.81914 -23.49416 -21.75669 -20.51297 -19.65178 -19.04634 -17.33367 -16.45110 -16.20409 -15.56675 -15.17355 -14.96444 -14.75870 -14.49749 -14.26700 -13.90234 -13.74441 -13.34241 -12.87579 -12.69507 -12.40244 -12.26514 -12.00522 -11.88814 -11.56844 -11.18235 -11.11085 -10.93279 -10.76311 -10.55030 -10.19409 -9.72346 -9.33684 -9.20258 -8.73158 -8.68921 -8.59500 -8.34960 -8.24994 -6.18523 -4.23470 2.98815 3.26624 3.36976 3.40188 3.46851 3.96121 4.15359 4.37555 4.77034 4.84213 4.92827 5.06226 5.10551 5.15834 5.25279 5.32438 5.52255 5.56699 5.59531 5.66238 5.68297 5.77211 5.91450 5.99583 6.04793 6.13675 6.21760 6.40242 6.48325 6.67307 6.68370 6.88094 6.96808 6.99525 7.04931 7.12790 7.16347 7.65099 8.15126 8.38094 8.74419 8.81465 9.44622 10.92674 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.025786 B = 0.005246 C = 0.004905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.582810 B = 5335.647583 C = 5707.354794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.522 5.522 3 C 0.056 3.944 4 C 0.057 3.943 5 N -0.689 5.689 6 C 0.072 3.928 7 C 0.071 3.929 8 H 0.068 0.932 9 C 0.511 3.489 10 O -0.537 6.537 11 N -0.701 5.701 12 C 0.157 3.843 13 C -0.017 4.017 14 C -0.491 4.491 15 H 0.078 0.922 16 C 0.081 3.919 17 N -0.895 5.895 18 Si 0.878 3.122 19 H -0.278 1.278 20 H -0.293 1.293 21 H -0.257 1.257 22 C -0.177 4.177 23 C -0.193 4.193 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.026 0.974 27 H 0.081 0.919 28 H 0.043 0.957 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.346 0.654 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.405 0.595 35 H 0.063 0.937 36 H 0.045 0.955 37 H 0.266 0.734 38 H 0.072 0.928 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.602 8.619 -8.566 16.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.247 5.247 3 C -0.073 4.073 4 C -0.073 4.073 5 N -0.321 5.321 6 C -0.058 4.058 7 C -0.041 4.041 8 H 0.086 0.914 9 C 0.294 3.706 10 O -0.414 6.414 11 N -0.351 5.351 12 C 0.033 3.967 13 C -0.018 4.018 14 C -0.529 4.529 15 H 0.096 0.904 16 C -0.122 4.122 17 N -0.531 5.531 18 Si 0.706 3.294 19 H -0.204 1.204 20 H -0.220 1.220 21 H -0.181 1.181 22 C -0.215 4.215 23 C -0.231 4.231 24 H 0.087 0.913 25 H 0.101 0.899 26 H 0.045 0.955 27 H 0.100 0.900 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.165 0.835 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.240 0.760 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.869 8.236 -9.244 15.833 hybrid contribution -0.225 -0.592 -0.029 0.634 sum 9.644 7.644 -9.273 15.409 Atomic orbital electron populations 1.22484 0.86343 1.03834 1.00226 1.61899 1.08614 1.12795 1.41421 1.22206 0.94560 0.89288 1.01217 1.22023 0.94823 0.98268 0.92150 1.60457 1.13236 1.13855 1.44564 1.21831 0.92323 0.89818 1.01827 1.21625 0.95593 0.92861 0.94052 0.91374 1.20203 0.78923 0.87085 0.84376 1.90658 1.50108 1.70596 1.30066 1.45928 1.67448 1.13343 1.08417 1.21157 0.98873 0.79854 0.96800 1.19617 0.96081 0.92885 0.93192 1.20181 0.93786 1.19461 1.19426 0.90387 1.24959 0.96316 0.96308 0.94649 1.69884 1.05719 1.42361 1.35152 0.86874 0.77516 0.82543 0.82515 1.20363 1.22012 1.18080 1.22827 0.92412 1.05520 1.00692 1.22955 1.04796 0.93371 1.01931 0.91301 0.89913 0.95532 0.90047 0.93893 0.94096 0.90187 0.83548 0.89555 0.93500 0.76030 0.91869 0.93675 0.92461 0.90907 0.89391 0.89151 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.17 60.07 0.55 0.82 16 2 N -0.52 -7.53 4.52 -236.13 -1.07 -8.60 16 3 C 0.06 0.63 5.62 -3.77 -0.02 0.61 16 4 C 0.06 0.56 6.72 -3.77 -0.03 0.54 16 5 N -0.69 -7.24 6.90 -113.64 -0.78 -8.02 16 6 C 0.07 0.90 5.98 -3.77 -0.02 0.88 16 7 C 0.07 1.05 2.35 -68.81 -0.16 0.89 16 8 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 9 C 0.51 9.25 5.98 -10.99 -0.07 9.19 16 10 O -0.54 -11.52 15.33 5.56 0.09 -11.44 16 11 N -0.70 -12.99 5.47 -60.30 -0.33 -13.32 16 12 C 0.16 3.27 5.12 -4.04 -0.02 3.25 16 13 C -0.02 -0.36 0.84 -155.67 -0.13 -0.49 16 14 C -0.49 -12.75 9.16 -34.44 -0.32 -13.06 16 15 H 0.08 2.18 8.06 -52.48 -0.42 1.76 16 16 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 17 N -0.89 -26.26 13.96 55.43 0.77 -25.49 16 18 Si 0.88 21.28 24.91 -169.99 -4.23 17.04 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.26 -5.99 5.71 56.52 0.32 -5.67 16 22 C -0.18 -3.34 9.96 -26.70 -0.27 -3.61 16 23 C -0.19 -3.91 7.63 -26.70 -0.20 -4.11 16 24 H 0.07 0.85 8.13 -51.93 -0.42 0.42 16 25 H 0.08 1.43 6.15 -51.93 -0.32 1.11 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.79 8.13 -51.93 -0.42 0.37 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.35 2.85 8.90 -39.29 -0.35 2.50 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.40 7.08 8.32 -40.82 -0.34 6.74 16 35 H 0.06 1.47 6.57 -51.93 -0.34 1.13 16 36 H 0.04 0.91 8.10 -51.93 -0.42 0.49 16 37 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 40 H 0.09 1.92 7.32 -51.93 -0.38 1.54 16 41 H 0.07 1.38 8.14 -51.92 -0.42 0.95 16 LS Contribution 324.44 15.07 4.89 4.89 Total: -1.00 -30.59 324.44 -8.31 -38.90 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -6.86 Total: 9.01 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -0.78 Total: -2.97 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -1.41 Total: -55.43 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.44 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.23 Total: 17.04 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.59 -8.31 -38.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686121022.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.045 kcal (2) G-P(sol) polarization free energy of solvation -30.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds