Wall clock time and date at job start Mon Mar 30 2020 04:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46954 * 111.00200 * 2 1 4 4 C 1.53055 * 109.38301 * 183.17520 * 3 2 1 5 5 N 1.46949 * 109.36255 * 301.63519 * 4 3 2 6 6 C 1.46954 * 110.90146 * 59.28537 * 5 4 3 7 7 C 1.46953 * 110.99653 * 123.80019 * 2 1 3 8 8 H 1.09003 * 109.49197 * 296.77186 * 7 2 1 9 9 C 1.50696 * 109.49278 * 56.84293 * 7 2 1 10 10 O 1.21281 * 119.99611 * 28.01295 * 9 7 2 11 11 N 1.34777 * 120.00164 * 208.01394 * 9 7 2 12 12 C 1.46501 * 119.99980 * 185.09492 * 11 9 7 13 13 C 1.52995 * 109.47131 * 175.40623 * 12 11 9 14 14 C 1.50697 * 115.54996 * 64.67690 * 13 12 11 15 15 H 1.08003 * 119.99815 * 266.41945 * 14 13 12 16 16 C 1.37876 * 120.00418 * 86.41032 * 14 13 12 17 17 N 1.31511 * 120.00132 * 178.57900 * 16 14 13 18 18 Si 1.86802 * 119.99663 * 358.58643 * 16 14 13 19 19 H 1.48501 * 109.47076 * 91.10590 * 18 16 14 20 20 H 1.48503 * 109.47059 * 211.10068 * 18 16 14 21 21 H 1.48491 * 109.47263 * 331.09922 * 18 16 14 22 22 C 1.52998 * 117.50178 * 279.00027 * 13 12 11 23 23 C 1.52998 * 117.50007 * 210.34230 * 13 12 11 24 24 H 1.09006 * 109.46732 * 56.34635 * 1 2 3 25 25 H 1.08995 * 109.47474 * 176.34444 * 1 2 3 26 26 H 1.09001 * 109.47112 * 296.35073 * 1 2 3 27 27 H 1.08997 * 109.48939 * 303.15371 * 3 2 1 28 28 H 1.09001 * 109.49453 * 63.19883 * 3 2 1 29 29 H 1.08997 * 109.48426 * 61.58062 * 4 3 2 30 30 H 1.08999 * 109.49031 * 181.64194 * 4 3 2 31 31 H 1.00904 * 110.99472 * 183.16697 * 5 4 3 32 32 H 1.09001 * 109.48998 * 180.71887 * 6 5 4 33 33 H 1.08996 * 109.48958 * 60.65893 * 6 5 4 34 34 H 0.96991 * 120.00083 * 5.09310 * 11 9 7 35 35 H 1.08998 * 109.47110 * 295.41065 * 12 11 9 36 36 H 1.09006 * 109.47336 * 55.40554 * 12 11 9 37 37 H 0.97005 * 120.00170 * 180.02562 * 17 16 14 38 38 H 1.08998 * 117.49397 * 0.02562 * 22 13 12 39 39 H 1.08994 * 117.49794 * 145.01614 * 22 13 12 40 40 H 1.08997 * 117.50213 * 214.98076 * 23 13 12 41 41 H 1.09008 * 117.49819 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5236 1.3295 -0.0800 5 7 4.0501 0.5658 1.0598 6 6 3.5234 -0.8061 1.0598 7 6 1.9956 -0.7632 1.1401 8 1 1.6938 -0.2820 2.0704 9 6 1.4504 -2.1675 1.0999 10 8 1.1454 -2.6694 0.0388 11 7 1.3017 -2.8657 2.2432 12 6 0.8781 -4.2673 2.1957 13 6 0.8980 -4.8542 3.6085 14 6 -0.0803 -4.2448 4.5793 15 1 0.2303 -3.4336 5.2212 16 6 -1.3718 -4.7226 4.6480 17 7 -2.2174 -4.2096 5.5147 18 14 -1.9202 -6.0988 3.5102 19 1 -1.6897 -7.4087 4.1706 20 1 -3.3660 -5.9446 3.2079 21 1 -1.1413 -6.0371 2.2475 22 6 2.2470 -5.3176 4.1621 23 6 1.1941 -6.3487 3.7485 24 1 -0.3633 0.5695 -0.8555 25 1 -0.3634 -1.0255 -0.0655 26 1 -0.3633 0.4561 0.9209 27 1 1.6014 1.9128 -0.8602 28 1 1.6935 1.8776 0.9171 29 1 3.8257 0.8486 -1.0103 30 1 3.9176 2.3453 -0.0507 31 1 5.0591 0.5658 1.0598 32 1 3.9177 -1.3471 1.9200 33 1 3.8253 -1.3116 0.1425 34 1 1.4752 -2.4401 3.0973 35 1 -0.1322 -4.3280 1.7912 36 1 1.5591 -4.8313 1.5583 37 1 -3.1260 -4.5460 5.5634 38 1 3.1203 -5.2039 3.5198 39 1 2.4267 -5.1818 5.2285 40 1 0.6816 -6.8911 4.5430 41 1 1.3742 -6.9140 2.8340 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686121022.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:59 Heat of formation + Delta-G solvation = -20.285692 kcal Electronic energy + Delta-G solvation = -21237.791562 eV Core-core repulsion = 18152.500980 eV Total energy + Delta-G solvation = -3085.290582 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.36082 -39.43356 -38.47405 -35.47152 -34.96323 -34.22596 -32.30561 -29.10568 -28.31976 -27.18190 -24.94453 -24.54648 -23.33930 -21.70669 -21.21116 -20.50511 -18.74153 -18.15187 -17.42133 -17.03303 -16.60936 -16.48756 -15.80514 -15.64776 -15.51584 -15.37470 -14.90451 -14.78138 -14.66892 -14.20543 -13.97124 -13.75678 -13.12856 -13.10337 -13.01326 -12.65184 -12.55048 -12.19387 -12.08995 -11.98410 -11.87040 -11.59479 -11.00078 -10.87142 -10.67783 -10.32016 -9.91134 -9.61109 -9.35171 -8.31025 -6.37329 1.32439 1.38616 1.48289 1.57622 2.10951 2.35254 2.86639 3.04576 3.16401 3.31876 3.76796 3.85995 3.98302 4.03253 4.06014 4.30062 4.36161 4.37197 4.41784 4.45577 4.51516 4.54007 4.63905 4.76717 4.82309 4.87283 4.93004 4.93644 5.01862 5.09560 5.29073 5.48427 5.54683 5.69118 5.73126 5.86278 6.00885 6.27487 6.43836 6.66196 6.73311 7.27932 7.33758 8.83533 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.025786 B = 0.005246 C = 0.004905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.582810 B = 5335.647583 C = 5707.354794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.536 5.536 3 C 0.053 3.947 4 C 0.058 3.942 5 N -0.689 5.689 6 C 0.079 3.921 7 C 0.076 3.924 8 H 0.069 0.931 9 C 0.512 3.488 10 O -0.572 6.572 11 N -0.700 5.700 12 C 0.166 3.834 13 C -0.041 4.041 14 C -0.478 4.478 15 H 0.046 0.954 16 C 0.028 3.972 17 N -0.944 5.944 18 Si 0.927 3.073 19 H -0.266 1.266 20 H -0.303 1.303 21 H -0.242 1.242 22 C -0.149 4.149 23 C -0.192 4.192 24 H 0.090 0.910 25 H 0.048 0.952 26 H 0.027 0.973 27 H 0.099 0.901 28 H 0.042 0.958 29 H 0.037 0.963 30 H 0.108 0.892 31 H 0.362 0.638 32 H 0.096 0.904 33 H 0.035 0.965 34 H 0.409 0.591 35 H 0.033 0.967 36 H 0.058 0.942 37 H 0.264 0.736 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.817 8.953 -9.715 18.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.262 5.262 3 C -0.075 4.075 4 C -0.071 4.071 5 N -0.322 5.322 6 C -0.051 4.051 7 C -0.036 4.036 8 H 0.086 0.914 9 C 0.298 3.702 10 O -0.451 6.451 11 N -0.350 5.350 12 C 0.042 3.958 13 C -0.043 4.043 14 C -0.516 4.516 15 H 0.064 0.936 16 C -0.170 4.170 17 N -0.583 5.583 18 Si 0.753 3.247 19 H -0.191 1.191 20 H -0.230 1.230 21 H -0.166 1.166 22 C -0.186 4.186 23 C -0.230 4.230 24 H 0.108 0.892 25 H 0.067 0.933 26 H 0.046 0.954 27 H 0.117 0.883 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.126 0.874 31 H 0.182 0.818 32 H 0.114 0.886 33 H 0.053 0.947 34 H 0.245 0.755 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.134 8.582 -10.389 18.133 hybrid contribution -0.870 -0.604 0.349 1.115 sum 11.264 7.979 -10.040 17.069 Atomic orbital electron populations 1.22407 0.86887 1.01988 1.01268 1.61937 1.08364 1.14743 1.41174 1.22363 0.95661 0.87452 1.01978 1.22096 0.93735 0.99636 0.91664 1.60441 1.14447 1.12394 1.44919 1.21732 0.90502 0.91190 1.01716 1.21591 0.97132 0.90515 0.94391 0.91358 1.20780 0.77844 0.88135 0.83459 1.90635 1.51551 1.71667 1.31233 1.45910 1.67356 1.12776 1.08963 1.20888 0.97652 0.81224 0.96016 1.19449 0.97574 0.94335 0.92892 1.20354 0.94391 1.17971 1.18858 0.93597 1.25679 0.96727 0.98646 0.95988 1.70012 1.06153 1.44562 1.37587 0.86068 0.76604 0.80501 0.81521 1.19116 1.23048 1.16562 1.22864 0.91944 1.02714 1.01122 1.23019 1.04934 0.92361 1.02681 0.89179 0.93290 0.95434 0.88252 0.94009 0.94454 0.87368 0.81771 0.88553 0.94665 0.75487 0.94828 0.92339 0.92685 0.87801 0.89543 0.90345 0.88394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 9.17 127.69 1.17 1.81 16 2 N -0.54 -14.84 4.52 -900.97 -4.08 -18.92 16 3 C 0.05 1.07 5.62 86.31 0.49 1.55 16 4 C 0.06 0.97 6.72 86.31 0.58 1.55 16 5 N -0.69 -12.54 6.90 -513.46 -3.54 -16.08 16 6 C 0.08 1.83 5.98 86.31 0.52 2.35 16 7 C 0.08 2.18 2.35 44.18 0.10 2.28 16 8 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 9 C 0.51 18.39 5.98 87.66 0.52 18.91 16 10 O -0.57 -24.56 15.33 -3.03 -0.05 -24.61 16 11 N -0.70 -25.58 5.47 -463.06 -2.53 -28.12 16 12 C 0.17 6.79 5.12 86.38 0.44 7.23 16 13 C -0.04 -1.74 0.84 -52.93 -0.04 -1.79 16 14 C -0.48 -25.10 9.16 25.60 0.23 -24.86 16 15 H 0.05 2.64 8.06 -2.91 -0.02 2.62 16 16 C 0.03 1.55 5.47 84.65 0.46 2.02 16 17 N -0.94 -57.12 13.96 21.45 0.30 -56.82 16 18 Si 0.93 44.04 24.91 68.60 1.71 45.75 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 20 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 21 H -0.24 -10.85 5.71 99.48 0.57 -10.28 16 22 C -0.15 -5.21 9.96 30.62 0.30 -4.90 16 23 C -0.19 -7.30 7.63 30.62 0.23 -7.06 16 24 H 0.09 2.12 8.13 -2.38 -0.02 2.10 16 25 H 0.05 1.72 6.15 -2.39 -0.01 1.71 16 26 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.10 1.64 8.13 -2.39 -0.02 1.62 16 28 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.36 4.81 8.90 -89.69 -0.80 4.01 16 32 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.41 14.16 8.32 -92.72 -0.77 13.39 16 35 H 0.03 1.56 6.57 -2.39 -0.02 1.54 16 36 H 0.06 2.23 8.10 -2.38 -0.02 2.21 16 37 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 38 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 39 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 40 H 0.08 3.18 7.32 -2.39 -0.02 3.16 16 41 H 0.10 3.27 8.14 -2.38 -0.02 3.25 16 Total: -1.00 -67.13 324.44 -3.86 -70.99 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: -0.68 Total: 28.71 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 5.01 Total: -0.91 kcal Atomic # 7 Polarization: -110.08 SS G_CDS: -9.86 Total: -119.93 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.05 Total: -24.61 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.71 Total: 45.75 kcal Total: -67.13 -3.86 -70.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686121022.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.705 kcal (2) G-P(sol) polarization free energy of solvation -67.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds