Wall clock time and date at job start Mon Mar 30 2020 06:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48809 * 111.18551 * 2 1 4 4 C 1.54939 * 103.34778 * 159.50763 * 3 2 1 5 5 C 1.54595 * 102.92312 * 322.68783 * 4 3 2 6 6 C 1.47905 * 110.99887 * 117.33927 * 2 1 3 7 7 H 1.08994 * 109.91596 * 333.70022 * 6 2 1 8 8 C 1.52996 * 109.91817 * 94.80517 * 6 2 1 9 9 C 1.52999 * 109.46763 * 292.04784 * 8 6 2 10 10 N 1.46903 * 109.47277 * 186.04296 * 9 8 6 11 11 C 1.46898 * 110.99807 * 294.30505 * 10 9 8 12 12 C 1.53242 * 109.33965 * 172.74382 * 11 10 9 13 13 N 1.47079 * 108.52140 * 53.83039 * 12 11 10 14 14 C 1.36937 * 120.88267 * 128.83643 * 13 12 11 15 15 H 1.08003 * 119.99850 * 326.44473 * 14 13 12 16 16 C 1.38809 * 119.99914 * 146.43898 * 14 13 12 17 17 N 1.31622 * 120.00018 * 168.60014 * 16 14 13 18 18 Si 1.86807 * 120.00292 * 348.60102 * 16 14 13 19 19 H 1.48501 * 109.46704 * 84.68998 * 18 16 14 20 20 H 1.48497 * 109.47022 * 204.69231 * 18 16 14 21 21 H 1.48506 * 109.46841 * 324.69021 * 18 16 14 22 22 C 1.47083 * 118.23567 * 308.81422 * 13 12 11 23 23 C 1.46893 * 111.00481 * 170.00166 * 10 9 8 24 24 H 1.08998 * 109.47127 * 309.75107 * 1 2 3 25 25 H 1.09007 * 109.46811 * 69.75116 * 1 2 3 26 26 H 1.09005 * 109.47425 * 189.74650 * 1 2 3 27 27 H 1.08998 * 110.52350 * 41.07426 * 3 2 1 28 28 H 1.09000 * 110.84032 * 278.08566 * 3 2 1 29 29 H 1.09004 * 110.71940 * 204.33035 * 4 3 2 30 30 H 1.08998 * 110.88143 * 81.12128 * 4 3 2 31 31 H 1.09000 * 110.31225 * 263.04623 * 5 4 3 32 32 H 1.08997 * 110.31123 * 140.87136 * 5 4 3 33 33 H 1.08999 * 109.46874 * 172.05417 * 8 6 2 34 34 H 1.08990 * 109.47714 * 52.05113 * 8 6 2 35 35 H 1.09002 * 109.46895 * 66.04453 * 9 8 6 36 36 H 1.08998 * 109.47761 * 306.04366 * 9 8 6 37 37 H 1.08994 * 109.49603 * 292.70401 * 11 10 9 38 38 H 1.09003 * 109.49259 * 52.78509 * 11 10 9 39 39 H 1.09004 * 109.62748 * 294.12072 * 12 11 10 40 40 H 1.09000 * 109.63039 * 173.54292 * 12 11 10 41 41 H 0.96993 * 120.00054 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.62790 * 291.47288 * 22 13 12 43 43 H 1.09003 * 109.78439 * 170.98727 * 22 13 12 44 44 H 1.09002 * 109.49223 * 307.21612 * 23 10 9 45 45 H 1.09003 * 109.48909 * 67.28981 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0067 1.3875 0.0000 4 6 3.4527 1.2107 0.5278 5 6 3.2975 0.1059 1.5979 6 6 1.9990 -0.6342 1.2266 7 1 1.2744 -0.5412 2.0354 8 6 2.2982 -2.1111 0.9622 9 6 0.9861 -2.8645 0.7352 10 7 1.2604 -4.3035 0.6253 11 6 2.0533 -4.5980 -0.5758 12 6 2.4706 -6.0724 -0.5595 13 7 1.2646 -6.8976 -0.3927 14 6 1.0028 -7.9394 -1.2419 15 1 1.2936 -7.8760 -2.2801 16 6 0.3638 -9.0771 -0.7683 17 7 -0.0886 -9.9782 -1.6143 18 14 0.1459 -9.3292 1.0698 19 1 -1.0757 -8.6184 1.5255 20 1 0.0112 -10.7797 1.3579 21 1 1.3291 -8.7899 1.7871 22 6 0.3475 -6.5743 0.7108 23 6 0.0138 -5.0802 0.6444 24 1 -0.3633 0.6571 0.7901 25 1 -0.3633 0.3557 -0.9642 26 1 -0.3634 -1.0129 0.1740 27 1 1.4273 2.0219 0.6707 28 1 2.0133 1.8009 -1.0086 29 1 3.8148 2.1352 0.9775 30 1 4.1201 0.8842 -0.2697 31 1 3.2096 0.5495 2.5897 32 1 4.1458 -0.5775 1.5620 33 1 2.8173 -2.5360 1.8213 34 1 2.9271 -2.2016 0.0766 35 1 0.5194 -2.5123 -0.1847 36 1 0.3145 -2.6859 1.5749 37 1 1.4545 -4.3993 -1.4647 38 1 2.9429 -3.9683 -0.5879 39 1 3.1539 -6.2504 0.2710 40 1 2.9598 -6.3249 -1.5003 41 1 -0.5354 -10.7729 -1.2834 42 1 0.8266 -6.8005 1.6633 43 1 -0.5675 -7.1586 0.6132 44 1 -0.5759 -4.8001 1.5174 45 1 -0.5567 -4.8747 -0.2614 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686606329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:00 Heat of formation + Delta-G solvation = 38.732279 kcal Electronic energy + Delta-G solvation = -21408.344091 eV Core-core repulsion = 18461.445815 eV Total energy + Delta-G solvation = -2946.898276 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.54785 -38.15248 -34.86638 -32.41418 -32.25394 -31.09671 -30.32000 -27.83380 -26.04954 -25.32082 -23.43149 -22.47463 -21.63828 -21.05362 -20.16148 -19.32397 -16.79839 -16.28883 -15.74805 -15.51570 -15.15405 -14.46163 -14.19676 -14.07797 -13.90648 -13.83838 -13.46927 -13.01491 -12.80298 -12.48127 -12.45982 -12.19940 -11.93007 -11.76286 -11.57804 -11.35930 -11.27575 -10.97814 -10.78775 -10.73674 -10.64469 -10.35348 -10.20478 -10.01163 -9.63603 -9.46032 -8.62256 -8.58584 -7.86739 -6.79173 -5.89267 -3.33657 3.34877 3.51099 3.56037 3.78336 4.21327 4.44651 4.51303 4.57148 4.75089 4.94099 5.08153 5.14541 5.20499 5.22122 5.33123 5.34292 5.39554 5.47186 5.54479 5.60945 5.64386 5.73523 5.78374 5.81371 5.87602 5.88297 5.96940 6.05893 6.10652 6.15326 6.23361 6.27275 6.37834 6.50333 6.65634 6.72072 6.72803 6.87728 6.96206 7.56266 7.59197 8.07614 8.40436 8.99561 9.76318 10.19390 11.27099 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.040880 B = 0.003929 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.771418 B = 7125.225341 C = 7162.503597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.515 5.515 3 C 0.034 3.966 4 C -0.123 4.123 5 C -0.127 4.127 6 C 0.066 3.934 7 H 0.051 0.949 8 C -0.098 4.098 9 C 0.055 3.945 10 N -0.536 5.536 11 C 0.042 3.958 12 C 0.152 3.848 13 N -0.610 5.610 14 C -0.259 4.259 15 H 0.083 0.917 16 C 0.023 3.977 17 N -0.917 5.917 18 Si 0.896 3.104 19 H -0.287 1.287 20 H -0.305 1.305 21 H -0.270 1.270 22 C 0.126 3.874 23 C 0.045 3.955 24 H 0.025 0.975 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.041 0.959 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.037 0.963 36 H 0.060 0.940 37 H 0.030 0.970 38 H 0.068 0.932 39 H 0.029 0.971 40 H 0.064 0.936 41 H 0.262 0.738 42 H 0.032 0.968 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.054 22.900 6.579 24.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.240 5.240 3 C -0.094 4.094 4 C -0.161 4.161 5 C -0.165 4.165 6 C -0.043 4.043 7 H 0.069 0.931 8 C -0.136 4.136 9 C -0.073 4.073 10 N -0.261 5.261 11 C -0.087 4.087 12 C 0.026 3.974 13 N -0.335 5.335 14 C -0.388 4.388 15 H 0.100 0.900 16 C -0.176 4.176 17 N -0.560 5.560 18 Si 0.727 3.273 19 H -0.214 1.214 20 H -0.233 1.233 21 H -0.195 1.195 22 C 0.000 4.000 23 C -0.085 4.085 24 H 0.043 0.957 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.060 0.940 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.049 0.951 38 H 0.086 0.914 39 H 0.047 0.953 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 4.400 22.274 6.474 23.610 hybrid contribution -1.168 0.499 1.014 1.625 sum 3.232 22.773 7.488 24.189 Atomic orbital electron populations 1.22684 0.87917 1.02344 1.00968 1.64720 1.07978 1.14337 1.36949 1.23288 0.95091 0.90099 1.00938 1.22466 0.96580 0.98443 0.98658 1.22456 0.97840 0.97719 0.98526 1.22442 0.95718 0.95301 0.90818 0.93128 1.21601 0.97829 0.91662 1.02532 1.22208 0.96961 0.88308 0.99862 1.61945 1.19543 1.04843 1.39767 1.22641 0.96900 0.98966 0.90173 1.21035 0.89037 0.88031 0.99336 1.44363 1.20497 1.34992 1.33648 1.18924 1.36432 0.91990 0.91411 0.89951 1.25432 0.99296 0.95312 0.97525 1.69763 1.40983 1.11550 1.33720 0.86816 0.78216 0.75329 0.86918 1.21430 1.23344 1.19508 1.21511 0.94591 0.92265 0.91594 1.22595 0.90237 0.96224 0.99437 0.95666 0.91393 0.90532 0.94031 0.90188 0.91287 0.90653 0.91651 0.90524 0.90935 0.91032 0.94484 0.92130 0.95142 0.91360 0.95310 0.91780 0.92773 0.95025 0.90831 0.91994 0.94888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.14 60.06 0.55 0.64 16 2 N -0.52 -5.43 5.08 -230.54 -1.17 -6.60 16 3 C 0.03 0.29 6.58 -1.74 -0.01 0.28 16 4 C -0.12 -0.97 7.06 -24.87 -0.18 -1.14 16 5 C -0.13 -1.09 6.57 -25.37 -0.17 -1.25 16 6 C 0.07 0.68 2.58 -66.64 -0.17 0.50 16 7 H 0.05 0.52 7.77 -51.93 -0.40 0.12 16 8 C -0.10 -1.17 4.44 -26.73 -0.12 -1.29 16 9 C 0.05 0.76 3.69 -3.82 -0.01 0.74 16 10 N -0.54 -9.28 4.63 -234.32 -1.08 -10.37 16 11 C 0.04 0.76 5.46 -3.70 -0.02 0.74 16 12 C 0.15 3.18 6.69 -3.60 -0.02 3.16 16 13 N -0.61 -15.22 2.76 -172.01 -0.47 -15.69 16 14 C -0.26 -7.49 10.08 -15.06 -0.15 -7.64 16 15 H 0.08 2.54 8.06 -52.48 -0.42 2.12 16 16 C 0.02 0.68 5.36 -17.43 -0.09 0.59 16 17 N -0.92 -28.74 13.97 55.49 0.78 -27.97 16 18 Si 0.90 23.19 24.23 -169.99 -4.12 19.07 16 19 H -0.29 -7.07 6.41 56.52 0.36 -6.71 16 20 H -0.31 -7.98 7.11 56.52 0.40 -7.58 16 21 H -0.27 -6.94 6.60 56.52 0.37 -6.57 16 22 C 0.13 2.88 4.31 -3.60 -0.02 2.87 16 23 C 0.04 0.84 5.62 -3.71 -0.02 0.82 16 24 H 0.02 0.22 7.91 -51.93 -0.41 -0.19 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.81 5.27 -51.93 -0.27 0.54 16 27 H 0.04 0.34 7.86 -51.93 -0.41 -0.07 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.66 7.69 -51.93 -0.40 0.26 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.92 6.69 -51.93 -0.35 0.58 16 35 H 0.04 0.54 6.33 -51.93 -0.33 0.21 16 36 H 0.06 0.80 7.96 -51.93 -0.41 0.39 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 1.06 6.29 -51.93 -0.33 0.73 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 1.32 7.95 -51.93 -0.41 0.90 16 41 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 42 H 0.03 0.74 6.76 -51.93 -0.35 0.39 16 43 H 0.07 1.80 4.75 -51.93 -0.25 1.55 16 44 H 0.06 1.03 7.99 -51.93 -0.41 0.62 16 45 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 329.21 15.07 4.96 4.96 Total: -1.00 -31.37 329.21 -9.72 -41.08 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -8.17 Total: -3.50 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -0.44 Total: -0.99 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: -1.96 Total: -60.63 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -4.12 Total: 19.07 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.37 -9.72 -41.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686606329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.815 kcal (2) G-P(sol) polarization free energy of solvation -31.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds