Wall clock time and date at job start Mon Mar 30 2020 06:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48809 * 111.18551 * 2 1 4 4 C 1.54939 * 103.34778 * 159.50763 * 3 2 1 5 5 C 1.54595 * 102.92312 * 322.68783 * 4 3 2 6 6 C 1.47905 * 110.99887 * 117.33927 * 2 1 3 7 7 H 1.08994 * 109.91596 * 333.70022 * 6 2 1 8 8 C 1.52996 * 109.91817 * 94.80517 * 6 2 1 9 9 C 1.52999 * 109.46763 * 292.04784 * 8 6 2 10 10 N 1.46903 * 109.47277 * 186.04296 * 9 8 6 11 11 C 1.46898 * 110.99807 * 294.30505 * 10 9 8 12 12 C 1.53242 * 109.33965 * 172.74382 * 11 10 9 13 13 N 1.47079 * 108.52140 * 53.83039 * 12 11 10 14 14 C 1.36937 * 120.88267 * 128.83643 * 13 12 11 15 15 H 1.08003 * 119.99850 * 326.44473 * 14 13 12 16 16 C 1.38809 * 119.99914 * 146.43898 * 14 13 12 17 17 N 1.31622 * 120.00018 * 168.60014 * 16 14 13 18 18 Si 1.86807 * 120.00292 * 348.60102 * 16 14 13 19 19 H 1.48501 * 109.46704 * 84.68998 * 18 16 14 20 20 H 1.48497 * 109.47022 * 204.69231 * 18 16 14 21 21 H 1.48506 * 109.46841 * 324.69021 * 18 16 14 22 22 C 1.47083 * 118.23567 * 308.81422 * 13 12 11 23 23 C 1.46893 * 111.00481 * 170.00166 * 10 9 8 24 24 H 1.08998 * 109.47127 * 309.75107 * 1 2 3 25 25 H 1.09007 * 109.46811 * 69.75116 * 1 2 3 26 26 H 1.09005 * 109.47425 * 189.74650 * 1 2 3 27 27 H 1.08998 * 110.52350 * 41.07426 * 3 2 1 28 28 H 1.09000 * 110.84032 * 278.08566 * 3 2 1 29 29 H 1.09004 * 110.71940 * 204.33035 * 4 3 2 30 30 H 1.08998 * 110.88143 * 81.12128 * 4 3 2 31 31 H 1.09000 * 110.31225 * 263.04623 * 5 4 3 32 32 H 1.08997 * 110.31123 * 140.87136 * 5 4 3 33 33 H 1.08999 * 109.46874 * 172.05417 * 8 6 2 34 34 H 1.08990 * 109.47714 * 52.05113 * 8 6 2 35 35 H 1.09002 * 109.46895 * 66.04453 * 9 8 6 36 36 H 1.08998 * 109.47761 * 306.04366 * 9 8 6 37 37 H 1.08994 * 109.49603 * 292.70401 * 11 10 9 38 38 H 1.09003 * 109.49259 * 52.78509 * 11 10 9 39 39 H 1.09004 * 109.62748 * 294.12072 * 12 11 10 40 40 H 1.09000 * 109.63039 * 173.54292 * 12 11 10 41 41 H 0.96993 * 120.00054 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.62790 * 291.47288 * 22 13 12 43 43 H 1.09003 * 109.78439 * 170.98727 * 22 13 12 44 44 H 1.09002 * 109.49223 * 307.21612 * 23 10 9 45 45 H 1.09003 * 109.48909 * 67.28981 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0067 1.3875 0.0000 4 6 3.4527 1.2107 0.5278 5 6 3.2975 0.1059 1.5979 6 6 1.9990 -0.6342 1.2266 7 1 1.2744 -0.5412 2.0354 8 6 2.2982 -2.1111 0.9622 9 6 0.9861 -2.8645 0.7352 10 7 1.2604 -4.3035 0.6253 11 6 2.0533 -4.5980 -0.5758 12 6 2.4706 -6.0724 -0.5595 13 7 1.2646 -6.8976 -0.3927 14 6 1.0028 -7.9394 -1.2419 15 1 1.2936 -7.8760 -2.2801 16 6 0.3638 -9.0771 -0.7683 17 7 -0.0886 -9.9782 -1.6143 18 14 0.1459 -9.3292 1.0698 19 1 -1.0757 -8.6184 1.5255 20 1 0.0112 -10.7797 1.3579 21 1 1.3291 -8.7899 1.7871 22 6 0.3475 -6.5743 0.7108 23 6 0.0138 -5.0802 0.6444 24 1 -0.3633 0.6571 0.7901 25 1 -0.3633 0.3557 -0.9642 26 1 -0.3634 -1.0129 0.1740 27 1 1.4273 2.0219 0.6707 28 1 2.0133 1.8009 -1.0086 29 1 3.8148 2.1352 0.9775 30 1 4.1201 0.8842 -0.2697 31 1 3.2096 0.5495 2.5897 32 1 4.1458 -0.5775 1.5620 33 1 2.8173 -2.5360 1.8213 34 1 2.9271 -2.2016 0.0766 35 1 0.5194 -2.5123 -0.1847 36 1 0.3145 -2.6859 1.5749 37 1 1.4545 -4.3993 -1.4647 38 1 2.9429 -3.9683 -0.5879 39 1 3.1539 -6.2504 0.2710 40 1 2.9598 -6.3249 -1.5003 41 1 -0.5354 -10.7729 -1.2834 42 1 0.8266 -6.8005 1.6633 43 1 -0.5675 -7.1586 0.6132 44 1 -0.5759 -4.8001 1.5174 45 1 -0.5567 -4.8747 -0.2614 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686606329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:59 Heat of formation + Delta-G solvation = 16.154071 kcal Electronic energy + Delta-G solvation = -21409.323156 eV Core-core repulsion = 18461.445815 eV Total energy + Delta-G solvation = -2947.877341 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.44364 -39.55836 -36.51757 -33.98277 -33.10534 -32.62580 -31.94551 -29.16983 -27.11136 -26.43488 -25.11262 -24.15575 -22.73474 -21.91109 -20.99260 -20.95276 -18.81732 -17.40051 -17.01127 -16.61055 -16.30916 -15.89199 -15.82111 -15.60632 -15.42481 -14.89268 -14.55308 -14.44532 -13.93754 -13.92712 -13.74986 -13.42803 -13.31950 -13.03578 -12.67205 -12.47936 -12.36397 -12.23365 -12.11353 -12.02636 -11.89583 -11.65795 -11.57750 -11.52290 -11.33228 -11.27885 -10.71139 -9.35991 -9.31601 -8.80547 -8.18056 -5.60031 1.29146 1.40609 1.51134 2.40380 2.89420 3.07804 3.10990 3.33289 3.70242 3.81985 4.00743 4.14063 4.16355 4.22542 4.31139 4.36922 4.40886 4.48509 4.53824 4.54549 4.57028 4.59511 4.67510 4.74158 4.78316 4.81688 4.92591 4.93334 5.00096 5.01592 5.04901 5.06488 5.17962 5.22846 5.29909 5.32015 5.43300 5.86665 5.99707 6.09738 6.12978 6.15582 6.26144 6.89862 7.57649 8.03681 9.02024 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.040880 B = 0.003929 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.771418 B = 7125.225341 C = 7162.503597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.535 5.535 3 C 0.033 3.967 4 C -0.120 4.120 5 C -0.126 4.126 6 C 0.068 3.932 7 H 0.053 0.947 8 C -0.090 4.090 9 C 0.060 3.940 10 N -0.539 5.539 11 C 0.056 3.944 12 C 0.147 3.853 13 N -0.625 5.625 14 C -0.253 4.253 15 H 0.046 0.954 16 C -0.034 4.034 17 N -0.963 5.963 18 Si 0.961 3.039 19 H -0.266 1.266 20 H -0.309 1.309 21 H -0.265 1.265 22 C 0.122 3.878 23 C 0.053 3.947 24 H 0.034 0.966 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.031 0.969 36 H 0.073 0.927 37 H 0.014 0.986 38 H 0.096 0.904 39 H 0.036 0.964 40 H 0.058 0.942 41 H 0.263 0.737 42 H 0.036 0.964 43 H 0.055 0.945 44 H 0.092 0.908 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.456 25.373 8.808 27.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.259 5.259 3 C -0.095 4.095 4 C -0.158 4.158 5 C -0.164 4.164 6 C -0.041 4.041 7 H 0.071 0.929 8 C -0.128 4.128 9 C -0.067 4.067 10 N -0.264 5.264 11 C -0.073 4.073 12 C 0.022 3.978 13 N -0.351 5.351 14 C -0.383 4.383 15 H 0.064 0.936 16 C -0.228 4.228 17 N -0.609 5.609 18 Si 0.789 3.211 19 H -0.192 1.192 20 H -0.238 1.238 21 H -0.190 1.190 22 C -0.003 4.003 23 C -0.076 4.076 24 H 0.053 0.947 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.091 0.909 37 H 0.033 0.967 38 H 0.114 0.886 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.110 0.890 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 4.812 24.805 8.716 26.729 hybrid contribution -1.254 -0.199 0.234 1.291 sum 3.559 24.606 8.950 26.423 Atomic orbital electron populations 1.22646 0.87761 1.01923 1.01404 1.64695 1.08328 1.15659 1.37241 1.23337 0.95559 0.89221 1.01359 1.22468 0.95989 0.99018 0.98350 1.22458 0.96810 0.97775 0.99356 1.22398 0.96686 0.94216 0.90795 0.92926 1.21527 0.96429 0.92772 1.02073 1.22255 0.98360 0.85989 1.00077 1.61955 1.18636 1.06814 1.39009 1.22452 0.97892 0.97021 0.89965 1.21192 0.87876 0.89435 0.99323 1.44504 1.22415 1.34592 1.33597 1.18837 1.35411 0.93343 0.90720 0.93581 1.26111 0.99591 0.95093 1.02037 1.69906 1.42722 1.12416 1.35845 0.85765 0.79054 0.74950 0.81315 1.19203 1.23806 1.18956 1.21536 0.93317 0.94803 0.90678 1.22421 0.91117 0.93846 1.00222 0.94732 0.91289 0.91514 0.93283 0.90024 0.89538 0.91207 0.90411 0.90607 0.90789 0.91998 0.95055 0.90883 0.96743 0.88569 0.94553 0.92347 0.92805 0.94658 0.92665 0.89004 0.96188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.14 127.69 1.17 1.36 16 2 N -0.53 -10.07 5.08 -883.29 -4.49 -14.56 16 3 C 0.03 0.48 6.58 86.60 0.57 1.05 16 4 C -0.12 -1.55 7.06 31.80 0.22 -1.33 16 5 C -0.13 -1.78 6.57 31.48 0.21 -1.58 16 6 C 0.07 1.21 2.58 45.06 0.12 1.32 16 7 H 0.05 0.92 7.77 -2.39 -0.02 0.90 16 8 C -0.09 -1.91 4.44 30.59 0.14 -1.78 16 9 C 0.06 1.52 3.69 86.30 0.32 1.84 16 10 N -0.54 -17.37 4.63 -895.27 -4.14 -21.52 16 11 C 0.06 1.91 5.46 86.38 0.47 2.38 16 12 C 0.15 6.06 6.69 86.35 0.58 6.63 16 13 N -0.63 -31.11 2.76 -698.11 -1.93 -33.04 16 14 C -0.25 -15.03 10.08 84.03 0.85 -14.18 16 15 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 16 C -0.03 -2.03 5.36 84.86 0.45 -1.57 16 17 N -0.96 -62.05 13.97 21.65 0.30 -61.75 16 18 Si 0.96 48.09 24.23 68.60 1.66 49.75 16 19 H -0.27 -12.32 6.41 99.48 0.64 -11.68 16 20 H -0.31 -15.58 7.11 99.48 0.71 -14.88 16 21 H -0.26 -12.90 6.60 99.48 0.66 -12.24 16 22 C 0.12 5.38 4.31 86.35 0.37 5.75 16 23 C 0.05 1.91 5.62 86.38 0.49 2.40 16 24 H 0.03 0.53 7.91 -2.39 -0.02 0.51 16 25 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 26 H 0.07 1.29 5.27 -2.38 -0.01 1.28 16 27 H 0.05 0.65 7.86 -2.39 -0.02 0.63 16 28 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 1.09 7.69 -2.39 -0.02 1.07 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 1.44 6.69 -2.39 -0.02 1.43 16 35 H 0.03 0.85 6.33 -2.39 -0.02 0.83 16 36 H 0.07 1.69 7.96 -2.39 -0.02 1.67 16 37 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.10 2.77 6.29 -2.39 -0.01 2.75 16 39 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.06 2.43 7.95 -2.39 -0.02 2.41 16 41 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 42 H 0.04 1.55 6.76 -2.39 -0.02 1.54 16 43 H 0.06 2.63 4.75 -2.39 -0.01 2.62 16 44 H 0.09 2.75 7.99 -2.39 -0.02 2.74 16 45 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -67.92 329.21 -1.84 -69.76 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 0.81 Total: 9.05 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 5.95 Total: 2.31 kcal Atomic # 7 Polarization: -120.61 SS G_CDS: -10.26 Total: -130.87 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 1.66 Total: 49.75 kcal Total: -67.92 -1.84 -69.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686606329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.913 kcal (2) G-P(sol) polarization free energy of solvation -67.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds