Wall clock time and date at job start Mon Mar 30 2020 06:15:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.48561 * 110.99567 * 2 1 4 4 C 1.54387 * 104.59106 * 200.95900 * 3 2 1 5 5 C 1.54257 * 105.06043 * 23.85361 * 4 3 2 6 6 C 1.48720 * 111.01667 * 244.49119 * 2 1 3 7 7 H 1.09000 * 110.38704 * 40.23805 * 6 2 1 8 8 C 1.52995 * 110.50765 * 277.74979 * 6 2 1 9 9 C 1.53004 * 109.47124 * 179.20781 * 8 6 2 10 10 N 1.46901 * 109.46824 * 183.43683 * 9 8 6 11 11 C 1.46893 * 111.00510 * 294.30183 * 10 9 8 12 12 C 1.53242 * 109.33711 * 172.74662 * 11 10 9 13 13 N 1.47075 * 108.52075 * 53.83478 * 12 11 10 14 14 C 1.36946 * 120.88078 * 128.83492 * 13 12 11 15 15 H 1.07999 * 119.99914 * 328.06655 * 14 13 12 16 16 C 1.38814 * 119.99612 * 148.07170 * 14 13 12 17 17 N 1.31619 * 119.99486 * 167.90093 * 16 14 13 18 18 Si 1.86798 * 120.00260 * 347.89484 * 16 14 13 19 19 H 1.48498 * 109.47075 * 84.94144 * 18 16 14 20 20 H 1.48497 * 109.47187 * 204.94512 * 18 16 14 21 21 H 1.48506 * 109.46922 * 324.94310 * 18 16 14 22 22 C 1.47078 * 118.23852 * 308.80820 * 13 12 11 23 23 C 1.46908 * 110.99590 * 169.99835 * 10 9 8 24 24 H 1.08997 * 109.46814 * 55.45488 * 1 2 3 25 25 H 1.08993 * 109.46638 * 175.45196 * 1 2 3 26 26 H 1.08991 * 109.47115 * 295.44920 * 1 2 3 27 27 H 1.09001 * 110.41202 * 82.18348 * 3 2 1 28 28 H 1.09000 * 110.51350 * 319.78694 * 3 2 1 29 29 H 1.09001 * 110.31970 * 264.95678 * 4 3 2 30 30 H 1.09003 * 110.40697 * 142.79490 * 4 3 2 31 31 H 1.09001 * 110.32619 * 118.89614 * 5 4 3 32 32 H 1.09004 * 110.32090 * 241.00286 * 5 4 3 33 33 H 1.09007 * 109.47305 * 299.20586 * 8 6 2 34 34 H 1.08998 * 109.47229 * 59.20868 * 8 6 2 35 35 H 1.08994 * 109.47306 * 303.44104 * 9 8 6 36 36 H 1.09004 * 109.46704 * 63.44617 * 9 8 6 37 37 H 1.08998 * 109.49359 * 292.70707 * 11 10 9 38 38 H 1.09002 * 109.49133 * 52.79360 * 11 10 9 39 39 H 1.08998 * 109.63030 * 294.12143 * 12 11 10 40 40 H 1.09003 * 109.62691 * 173.54239 * 12 11 10 41 41 H 0.97002 * 119.99855 * 179.97438 * 17 16 14 42 42 H 1.08997 * 109.63346 * 291.47805 * 22 13 12 43 43 H 1.09001 * 109.62865 * 170.89408 * 22 13 12 44 44 H 1.09003 * 109.49291 * 307.21882 * 23 10 9 45 45 H 1.09003 * 109.48536 * 67.29996 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0014 1.3870 0.0000 4 6 3.4433 1.2502 -0.5344 5 6 3.4433 -0.0538 -1.3585 6 6 2.0024 -0.5979 -1.2529 7 1 1.4106 -0.2753 -2.1095 8 6 2.0143 -2.1247 -1.1556 9 6 2.5479 -2.7149 -2.4624 10 7 2.4823 -4.1812 -2.4002 11 6 3.3929 -4.7059 -1.3738 12 6 3.1640 -6.2127 -1.2149 13 7 3.2860 -6.8458 -2.5368 14 6 4.1042 -7.9277 -2.7252 15 1 5.0089 -8.0282 -2.1440 16 6 3.7707 -8.8950 -3.6633 17 7 4.6569 -9.8014 -4.0174 18 14 2.0642 -8.9104 -4.4229 19 1 2.0285 -7.9788 -5.5788 20 1 1.7400 -10.2842 -4.8841 21 1 1.0674 -8.4803 -3.4096 22 6 2.5055 -6.2865 -3.6509 23 6 2.7603 -4.7768 -3.7140 24 1 -0.3633 0.5827 -0.8465 25 1 -0.3632 -1.0244 -0.0815 26 1 -0.3633 0.4416 0.9279 27 1 2.0079 1.7917 1.0121 28 1 1.4104 2.0229 -0.6591 29 1 4.1483 1.1749 0.2935 30 1 3.6954 2.0994 -1.1695 31 1 3.6937 0.1555 -2.3985 32 1 4.1497 -0.7685 -0.9361 33 1 2.6563 -2.4311 -0.3296 34 1 1.0007 -2.4855 -0.9811 35 1 1.9423 -2.3592 -3.2958 36 1 3.5826 -2.4034 -2.6060 37 1 4.4244 -4.5245 -1.6757 38 1 3.1979 -4.2063 -0.4249 39 1 2.1663 -6.3913 -0.8140 40 1 3.9125 -6.6276 -0.5398 41 1 4.4238 -10.4776 -4.6727 42 1 1.4445 -6.4721 -3.4843 43 1 2.8187 -6.7501 -4.5864 44 1 2.1065 -4.3285 -4.4622 45 1 3.8007 -4.5943 -3.9832 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686606332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:04 Heat of formation + Delta-G solvation = 36.830872 kcal Electronic energy + Delta-G solvation = -21252.833956 eV Core-core repulsion = 18305.853228 eV Total energy + Delta-G solvation = -2946.980728 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.49197 -38.22368 -34.96950 -32.52490 -32.19965 -31.12709 -30.35151 -27.72745 -26.01042 -25.32816 -23.52209 -22.59166 -21.76889 -21.09285 -19.96990 -19.31077 -16.83661 -16.27959 -15.82946 -15.39642 -14.96887 -14.69573 -14.31619 -14.03013 -13.99541 -13.96962 -13.74033 -13.15669 -12.68778 -12.50846 -12.44991 -11.99957 -11.95464 -11.71376 -11.59239 -11.43637 -11.21447 -11.15129 -10.85720 -10.71415 -10.66910 -10.35815 -10.22959 -10.02155 -9.66550 -9.45090 -8.73307 -8.60902 -7.92726 -6.83497 -5.90191 -3.33237 3.33522 3.50473 3.54929 3.68734 4.29921 4.39408 4.52622 4.55929 4.75650 4.90572 5.05548 5.11782 5.19352 5.24747 5.25902 5.30109 5.38288 5.44943 5.52340 5.57635 5.65718 5.70452 5.72054 5.76881 5.81617 5.89682 5.96486 6.02666 6.06209 6.11876 6.21473 6.24474 6.33047 6.47323 6.62193 6.67703 6.70350 6.80631 6.93753 7.51410 7.54587 8.04466 8.38455 8.97767 9.75102 10.17098 11.26212 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.041370 B = 0.003806 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.663347 B = 7354.852325 C = 7528.297300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.512 5.512 3 C 0.032 3.968 4 C -0.125 4.125 5 C -0.121 4.121 6 C 0.064 3.936 7 H 0.051 0.949 8 C -0.098 4.098 9 C 0.057 3.943 10 N -0.535 5.535 11 C 0.040 3.960 12 C 0.152 3.848 13 N -0.611 5.611 14 C -0.259 4.259 15 H 0.084 0.916 16 C 0.022 3.978 17 N -0.917 5.917 18 Si 0.896 3.104 19 H -0.287 1.287 20 H -0.305 1.305 21 H -0.270 1.270 22 C 0.125 3.875 23 C 0.044 3.956 24 H 0.026 0.974 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.030 0.970 37 H 0.030 0.970 38 H 0.069 0.931 39 H 0.030 0.970 40 H 0.064 0.936 41 H 0.262 0.738 42 H 0.033 0.967 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.189 22.571 5.634 24.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.236 5.236 3 C -0.096 4.096 4 C -0.163 4.163 5 C -0.160 4.160 6 C -0.045 4.045 7 H 0.069 0.931 8 C -0.136 4.136 9 C -0.072 4.072 10 N -0.260 5.260 11 C -0.089 4.089 12 C 0.026 3.974 13 N -0.335 5.335 14 C -0.387 4.387 15 H 0.101 0.899 16 C -0.177 4.177 17 N -0.560 5.560 18 Si 0.727 3.273 19 H -0.215 1.215 20 H -0.234 1.234 21 H -0.195 1.195 22 C -0.001 4.001 23 C -0.085 4.085 24 H 0.044 0.956 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.048 0.952 37 H 0.049 0.951 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.051 0.949 43 H 0.093 0.907 44 H 0.081 0.919 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.462 21.961 6.161 23.706 hybrid contribution -0.436 0.670 -1.524 1.721 sum -6.897 22.631 4.636 24.109 Atomic orbital electron populations 1.22515 0.88000 1.02360 1.00654 1.65309 1.08143 1.14718 1.35426 1.23105 0.95328 0.90196 1.00986 1.22295 0.96542 0.97709 0.99792 1.22382 0.96567 0.96976 1.00033 1.22706 0.95206 0.95704 0.90835 0.93117 1.21480 1.02542 0.91797 0.97819 1.22059 0.98920 0.88661 0.97547 1.61912 1.53132 1.04110 1.06820 1.22677 0.93622 0.98122 0.94477 1.21021 0.98996 0.89422 0.87976 1.44381 1.51865 1.34042 1.03235 1.18938 1.01176 0.96758 1.21849 0.89850 1.25397 0.97581 0.95566 0.99151 1.69767 1.33880 1.18387 1.33994 0.86832 0.86364 0.75089 0.78967 1.21468 1.23363 1.19513 1.21539 0.95190 0.90654 0.92709 1.22611 0.98813 0.97540 0.89532 0.95582 0.90874 0.91408 0.90255 0.94066 0.91001 0.91531 0.91444 0.90685 0.90985 0.91177 0.91636 0.95221 0.95136 0.91250 0.95231 0.91736 0.92767 0.94922 0.90709 0.91862 0.94810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.45 60.07 0.57 0.69 16 2 N -0.51 -5.22 5.34 -230.22 -1.23 -6.45 16 3 C 0.03 0.27 6.49 -2.18 -0.01 0.26 16 4 C -0.13 -1.02 7.00 -25.35 -0.18 -1.20 16 5 C -0.12 -1.15 5.70 -25.35 -0.14 -1.29 16 6 C 0.06 0.66 2.34 -65.98 -0.15 0.51 16 7 H 0.05 0.52 7.97 -51.93 -0.41 0.11 16 8 C -0.10 -1.17 4.69 -26.73 -0.13 -1.30 16 9 C 0.06 0.76 4.74 -3.82 -0.02 0.75 16 10 N -0.53 -9.10 4.63 -234.31 -1.08 -10.18 16 11 C 0.04 0.70 5.46 -3.70 -0.02 0.68 16 12 C 0.15 3.15 6.69 -3.60 -0.02 3.13 16 13 N -0.61 -15.11 2.78 -172.01 -0.48 -15.58 16 14 C -0.26 -7.43 10.09 -15.05 -0.15 -7.58 16 15 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 16 C 0.02 0.64 5.35 -17.43 -0.09 0.55 16 17 N -0.92 -28.64 13.97 55.49 0.78 -27.86 16 18 Si 0.90 23.08 24.21 -169.99 -4.12 18.97 16 19 H -0.29 -7.03 6.39 56.52 0.36 -6.67 16 20 H -0.31 -7.96 7.11 56.52 0.40 -7.56 16 21 H -0.27 -6.91 6.57 56.52 0.37 -6.54 16 22 C 0.12 2.83 4.30 -3.60 -0.02 2.81 16 23 C 0.04 0.83 5.62 -3.70 -0.02 0.81 16 24 H 0.03 0.22 7.98 -51.93 -0.41 -0.20 16 25 H 0.07 0.68 7.37 -51.93 -0.38 0.29 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.33 7.91 -51.93 -0.41 -0.08 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.77 7.81 -51.93 -0.41 0.36 16 33 H 0.07 0.93 6.49 -51.92 -0.34 0.59 16 34 H 0.07 0.90 7.40 -51.93 -0.38 0.51 16 35 H 0.07 0.83 7.97 -51.93 -0.41 0.42 16 36 H 0.03 0.40 7.55 -51.93 -0.39 0.01 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 1.05 6.23 -51.93 -0.32 0.73 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 1.31 7.95 -51.93 -0.41 0.90 16 41 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 42 H 0.03 0.76 6.77 -51.93 -0.35 0.40 16 43 H 0.07 1.82 4.58 -51.93 -0.24 1.58 16 44 H 0.06 1.04 7.99 -51.93 -0.41 0.62 16 45 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 332.42 15.07 5.01 5.01 Total: -1.00 -31.20 332.42 -9.82 -41.02 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -8.31 Total: -3.72 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -0.39 Total: -1.19 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: -2.02 Total: -60.08 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.12 Total: 18.97 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.20 -9.82 -41.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686606332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.850 kcal (2) G-P(sol) polarization free energy of solvation -31.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds