Wall clock time and date at job start Mon Mar 30 2020 06:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.48561 * 110.99567 * 2 1 4 4 C 1.54387 * 104.59106 * 200.95900 * 3 2 1 5 5 C 1.54257 * 105.06043 * 23.85361 * 4 3 2 6 6 C 1.48720 * 111.01667 * 244.49119 * 2 1 3 7 7 H 1.09000 * 110.38704 * 40.23805 * 6 2 1 8 8 C 1.52995 * 110.50765 * 277.74979 * 6 2 1 9 9 C 1.53004 * 109.47124 * 179.20781 * 8 6 2 10 10 N 1.46901 * 109.46824 * 183.43683 * 9 8 6 11 11 C 1.46893 * 111.00510 * 294.30183 * 10 9 8 12 12 C 1.53242 * 109.33711 * 172.74662 * 11 10 9 13 13 N 1.47075 * 108.52075 * 53.83478 * 12 11 10 14 14 C 1.36946 * 120.88078 * 128.83492 * 13 12 11 15 15 H 1.07999 * 119.99914 * 328.06655 * 14 13 12 16 16 C 1.38814 * 119.99612 * 148.07170 * 14 13 12 17 17 N 1.31619 * 119.99486 * 167.90093 * 16 14 13 18 18 Si 1.86798 * 120.00260 * 347.89484 * 16 14 13 19 19 H 1.48498 * 109.47075 * 84.94144 * 18 16 14 20 20 H 1.48497 * 109.47187 * 204.94512 * 18 16 14 21 21 H 1.48506 * 109.46922 * 324.94310 * 18 16 14 22 22 C 1.47078 * 118.23852 * 308.80820 * 13 12 11 23 23 C 1.46908 * 110.99590 * 169.99835 * 10 9 8 24 24 H 1.08997 * 109.46814 * 55.45488 * 1 2 3 25 25 H 1.08993 * 109.46638 * 175.45196 * 1 2 3 26 26 H 1.08991 * 109.47115 * 295.44920 * 1 2 3 27 27 H 1.09001 * 110.41202 * 82.18348 * 3 2 1 28 28 H 1.09000 * 110.51350 * 319.78694 * 3 2 1 29 29 H 1.09001 * 110.31970 * 264.95678 * 4 3 2 30 30 H 1.09003 * 110.40697 * 142.79490 * 4 3 2 31 31 H 1.09001 * 110.32619 * 118.89614 * 5 4 3 32 32 H 1.09004 * 110.32090 * 241.00286 * 5 4 3 33 33 H 1.09007 * 109.47305 * 299.20586 * 8 6 2 34 34 H 1.08998 * 109.47229 * 59.20868 * 8 6 2 35 35 H 1.08994 * 109.47306 * 303.44104 * 9 8 6 36 36 H 1.09004 * 109.46704 * 63.44617 * 9 8 6 37 37 H 1.08998 * 109.49359 * 292.70707 * 11 10 9 38 38 H 1.09002 * 109.49133 * 52.79360 * 11 10 9 39 39 H 1.08998 * 109.63030 * 294.12143 * 12 11 10 40 40 H 1.09003 * 109.62691 * 173.54239 * 12 11 10 41 41 H 0.97002 * 119.99855 * 179.97438 * 17 16 14 42 42 H 1.08997 * 109.63346 * 291.47805 * 22 13 12 43 43 H 1.09001 * 109.62865 * 170.89408 * 22 13 12 44 44 H 1.09003 * 109.49291 * 307.21882 * 23 10 9 45 45 H 1.09003 * 109.48536 * 67.29996 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0014 1.3870 0.0000 4 6 3.4433 1.2502 -0.5344 5 6 3.4433 -0.0538 -1.3585 6 6 2.0024 -0.5979 -1.2529 7 1 1.4106 -0.2753 -2.1095 8 6 2.0143 -2.1247 -1.1556 9 6 2.5479 -2.7149 -2.4624 10 7 2.4823 -4.1812 -2.4002 11 6 3.3929 -4.7059 -1.3738 12 6 3.1640 -6.2127 -1.2149 13 7 3.2860 -6.8458 -2.5368 14 6 4.1042 -7.9277 -2.7252 15 1 5.0089 -8.0282 -2.1440 16 6 3.7707 -8.8950 -3.6633 17 7 4.6569 -9.8014 -4.0174 18 14 2.0642 -8.9104 -4.4229 19 1 2.0285 -7.9788 -5.5788 20 1 1.7400 -10.2842 -4.8841 21 1 1.0674 -8.4803 -3.4096 22 6 2.5055 -6.2865 -3.6509 23 6 2.7603 -4.7768 -3.7140 24 1 -0.3633 0.5827 -0.8465 25 1 -0.3632 -1.0244 -0.0815 26 1 -0.3633 0.4416 0.9279 27 1 2.0079 1.7917 1.0121 28 1 1.4104 2.0229 -0.6591 29 1 4.1483 1.1749 0.2935 30 1 3.6954 2.0994 -1.1695 31 1 3.6937 0.1555 -2.3985 32 1 4.1497 -0.7685 -0.9361 33 1 2.6563 -2.4311 -0.3296 34 1 1.0007 -2.4855 -0.9811 35 1 1.9423 -2.3592 -3.2958 36 1 3.5826 -2.4034 -2.6060 37 1 4.4244 -4.5245 -1.6757 38 1 3.1979 -4.2063 -0.4249 39 1 2.1663 -6.3913 -0.8140 40 1 3.9125 -6.6276 -0.5398 41 1 4.4238 -10.4776 -4.6727 42 1 1.4445 -6.4721 -3.4843 43 1 2.8187 -6.7501 -4.5864 44 1 2.1065 -4.3285 -4.4622 45 1 3.8007 -4.5943 -3.9832 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686606332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:03 Heat of formation + Delta-G solvation = 14.368857 kcal Electronic energy + Delta-G solvation = -21253.807982 eV Core-core repulsion = 18305.853228 eV Total energy + Delta-G solvation = -2947.954754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.38863 -39.58927 -36.58610 -34.05237 -33.09032 -32.65036 -31.95604 -29.08566 -27.05289 -26.35102 -25.17779 -24.18666 -23.01437 -21.82184 -21.14791 -20.64192 -18.82839 -17.43599 -16.98356 -16.65326 -16.13871 -15.89571 -15.83217 -15.53210 -15.50348 -14.97593 -14.65734 -14.55715 -14.36111 -13.91476 -13.66965 -13.34962 -13.16344 -12.93198 -12.64421 -12.52151 -12.29627 -12.25257 -12.11189 -12.04906 -11.98472 -11.73434 -11.57513 -11.50409 -11.35270 -11.27796 -10.71433 -9.44622 -9.33522 -8.83153 -8.17710 -5.58003 1.28652 1.40873 1.50971 2.40254 2.77858 3.09898 3.16476 3.34471 3.67681 3.81814 3.99816 4.11411 4.15100 4.22457 4.29238 4.35788 4.42659 4.49404 4.53279 4.55062 4.56727 4.60585 4.65855 4.69883 4.73828 4.81871 4.86391 4.91537 4.97608 5.01207 5.02306 5.07998 5.17663 5.25556 5.28218 5.32386 5.35092 5.85479 5.94826 6.08750 6.10872 6.13344 6.25529 6.89341 7.57978 8.03047 9.02423 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.041370 B = 0.003806 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.663347 B = 7354.852325 C = 7528.297300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.530 5.530 3 C 0.032 3.968 4 C -0.123 4.123 5 C -0.123 4.123 6 C 0.067 3.933 7 H 0.055 0.945 8 C -0.088 4.088 9 C 0.062 3.938 10 N -0.541 5.541 11 C 0.053 3.947 12 C 0.146 3.854 13 N -0.626 5.626 14 C -0.252 4.252 15 H 0.049 0.951 16 C -0.036 4.036 17 N -0.963 5.963 18 Si 0.960 3.040 19 H -0.265 1.265 20 H -0.310 1.310 21 H -0.266 1.266 22 C 0.120 3.880 23 C 0.054 3.946 24 H 0.032 0.968 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.033 0.967 37 H 0.019 0.981 38 H 0.096 0.904 39 H 0.034 0.966 40 H 0.059 0.941 41 H 0.263 0.737 42 H 0.035 0.965 43 H 0.056 0.944 44 H 0.093 0.907 45 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.874 25.296 5.502 27.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.254 5.254 3 C -0.096 4.096 4 C -0.161 4.161 5 C -0.161 4.161 6 C -0.041 4.041 7 H 0.072 0.928 8 C -0.126 4.126 9 C -0.066 4.066 10 N -0.266 5.266 11 C -0.076 4.076 12 C 0.021 3.979 13 N -0.351 5.351 14 C -0.382 4.382 15 H 0.066 0.934 16 C -0.230 4.230 17 N -0.609 5.609 18 Si 0.789 3.211 19 H -0.191 1.191 20 H -0.239 1.239 21 H -0.191 1.191 22 C -0.005 4.005 23 C -0.076 4.076 24 H 0.050 0.950 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.051 0.949 37 H 0.038 0.962 38 H 0.114 0.886 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.112 0.888 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -8.163 24.745 6.045 26.749 hybrid contribution 0.136 -0.125 -1.385 1.398 sum -8.027 24.620 4.660 26.311 Atomic orbital electron populations 1.22520 0.87403 1.02144 1.01392 1.65287 1.08894 1.15870 1.35323 1.23153 0.95438 0.89415 1.01599 1.22304 0.96414 0.97558 0.99840 1.22387 0.95689 0.97354 1.00663 1.22624 0.95882 0.94428 0.91195 0.92751 1.21350 1.01631 0.93065 0.96550 1.22097 0.99552 0.86066 0.98902 1.61897 1.52653 1.06316 1.05702 1.22485 0.93202 0.95807 0.96084 1.21182 0.99038 0.91472 0.86176 1.44522 1.51637 1.33492 1.05474 1.18863 1.00540 0.98066 1.20698 0.93367 1.26071 1.01210 0.95427 1.00304 1.69908 1.35899 1.19675 1.35456 0.85785 0.81384 0.75055 0.78851 1.19149 1.23925 1.19073 1.21566 0.94603 0.93313 0.91051 1.22431 0.98963 0.94915 0.91270 0.94970 0.91548 0.90574 0.89683 0.93323 0.91051 0.90103 0.90711 0.91766 0.91953 0.91904 0.90219 0.94872 0.96242 0.88588 0.94747 0.92277 0.92833 0.94715 0.92543 0.88840 0.95840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.45 127.69 1.21 1.42 16 2 N -0.53 -9.55 5.34 -882.27 -4.71 -14.27 16 3 C 0.03 0.45 6.49 86.45 0.56 1.01 16 4 C -0.12 -1.69 7.00 31.49 0.22 -1.47 16 5 C -0.12 -2.02 5.70 31.49 0.18 -1.84 16 6 C 0.07 1.22 2.34 45.03 0.11 1.32 16 7 H 0.05 0.96 7.97 -2.39 -0.02 0.94 16 8 C -0.09 -1.88 4.69 30.59 0.14 -1.73 16 9 C 0.06 1.47 4.74 86.30 0.41 1.88 16 10 N -0.54 -16.99 4.63 -895.22 -4.14 -21.14 16 11 C 0.05 1.77 5.46 86.39 0.47 2.24 16 12 C 0.15 5.98 6.69 86.35 0.58 6.56 16 13 N -0.63 -30.84 2.78 -698.13 -1.94 -32.78 16 14 C -0.25 -14.83 10.09 84.03 0.85 -13.98 16 15 H 0.05 3.11 8.06 -2.91 -0.02 3.08 16 16 C -0.04 -2.14 5.35 84.86 0.45 -1.68 16 17 N -0.96 -61.84 13.97 21.65 0.30 -61.54 16 18 Si 0.96 47.94 24.21 68.60 1.66 49.60 16 19 H -0.27 -12.21 6.39 99.48 0.64 -11.57 16 20 H -0.31 -15.63 7.11 99.48 0.71 -14.92 16 21 H -0.27 -12.95 6.57 99.48 0.65 -12.29 16 22 C 0.12 5.24 4.30 86.35 0.37 5.61 16 23 C 0.05 1.87 5.62 86.38 0.49 2.36 16 24 H 0.03 0.45 7.98 -2.39 -0.02 0.43 16 25 H 0.07 1.10 7.37 -2.39 -0.02 1.09 16 26 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.05 0.63 7.91 -2.39 -0.02 0.61 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 1.19 7.81 -2.38 -0.02 1.17 16 33 H 0.06 1.46 6.49 -2.38 -0.02 1.44 16 34 H 0.06 1.45 7.40 -2.39 -0.02 1.44 16 35 H 0.08 1.72 7.97 -2.39 -0.02 1.70 16 36 H 0.03 0.79 7.55 -2.39 -0.02 0.77 16 37 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.10 2.70 6.23 -2.39 -0.01 2.68 16 39 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.06 2.43 7.95 -2.39 -0.02 2.41 16 41 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 42 H 0.03 1.52 6.77 -2.39 -0.02 1.51 16 43 H 0.06 2.67 4.58 -2.39 -0.01 2.65 16 44 H 0.09 2.72 7.99 -2.39 -0.02 2.70 16 45 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -67.49 332.42 -2.00 -69.48 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: 0.80 Total: 8.93 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 6.04 Total: 1.71 kcal Atomic # 7 Polarization: -119.23 SS G_CDS: -10.50 Total: -129.73 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 1.66 Total: 49.60 kcal Total: -67.49 -2.00 -69.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686606332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.854 kcal (2) G-P(sol) polarization free energy of solvation -67.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds