Wall clock time and date at job start Mon Mar 30 2020 06:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46852 * 110.99807 * 2 1 4 4 C 1.53036 * 109.51854 * 174.16053 * 3 2 1 5 5 C 1.53118 * 109.28436 * 59.17830 * 4 3 2 6 6 C 1.53112 * 109.21079 * 302.31407 * 5 4 3 7 7 H 1.08999 * 109.50127 * 297.74199 * 6 5 4 8 8 C 1.53005 * 109.50632 * 177.62231 * 6 5 4 9 9 N 1.46903 * 109.47338 * 174.99691 * 8 6 5 10 10 C 1.46902 * 110.99918 * 294.30666 * 9 8 6 11 11 C 1.53241 * 109.33734 * 172.74890 * 10 9 8 12 12 N 1.47080 * 108.52094 * 53.82825 * 11 10 9 13 13 C 1.36934 * 120.87705 * 128.84237 * 12 11 10 14 14 H 1.08003 * 119.99708 * 206.61355 * 13 12 11 15 15 C 1.38811 * 120.00584 * 26.61052 * 13 12 11 16 16 N 1.31624 * 119.99780 * 17.05777 * 15 13 12 17 17 Si 1.86800 * 120.00240 * 197.05004 * 15 13 12 18 18 H 1.48501 * 109.46819 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46989 * 120.00122 * 17 15 13 20 20 H 1.48494 * 109.47520 * 240.00377 * 17 15 13 21 21 C 1.47078 * 118.23819 * 308.81253 * 12 11 10 22 22 C 1.46896 * 110.99888 * 170.00236 * 9 8 6 23 23 C 1.46841 * 111.00346 * 235.78777 * 2 1 3 24 24 H 1.09000 * 109.47067 * 56.04703 * 1 2 3 25 25 H 1.08998 * 109.46909 * 176.04462 * 1 2 3 26 26 H 1.08996 * 109.47207 * 296.05090 * 1 2 3 27 27 H 1.08998 * 109.46310 * 54.14267 * 3 2 1 28 28 H 1.08998 * 109.45098 * 294.16913 * 3 2 1 29 29 H 1.09001 * 109.50751 * 299.23132 * 4 3 2 30 30 H 1.09008 * 109.53440 * 179.13702 * 4 3 2 31 31 H 1.09002 * 109.52086 * 62.24539 * 5 4 3 32 32 H 1.08991 * 109.52318 * 182.37470 * 5 4 3 33 33 H 1.08995 * 109.47041 * 295.00130 * 8 6 5 34 34 H 1.09003 * 109.46474 * 55.00147 * 8 6 5 35 35 H 1.09005 * 109.48831 * 292.70722 * 10 9 8 36 36 H 1.08997 * 109.49752 * 52.78371 * 10 9 8 37 37 H 1.08995 * 109.62464 * 294.11383 * 11 10 9 38 38 H 1.09002 * 109.78742 * 173.63323 * 11 10 9 39 39 H 0.96994 * 119.99535 * 179.97438 * 16 15 13 40 40 H 1.09004 * 109.63048 * 291.47811 * 21 12 11 41 41 H 1.08994 * 109.78910 * 170.99529 * 21 12 11 42 42 H 1.08996 * 109.49360 * 307.21554 * 22 9 8 43 43 H 1.09005 * 109.49110 * 67.26359 * 22 9 8 44 44 H 1.09000 * 109.46141 * 305.85903 * 23 2 1 45 45 H 1.09001 * 109.46441 * 65.83021 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3342 0.1468 5 6 4.1189 0.5369 -1.0143 6 6 3.5196 -0.8720 -1.0214 7 1 3.7828 -1.3840 -0.0959 8 6 4.0708 -1.6557 -2.2143 9 7 3.5899 -3.0424 -2.1537 10 6 4.1402 -3.7398 -0.9837 11 6 3.4778 -5.1157 -0.8551 12 7 3.6299 -5.8286 -2.1326 13 6 4.1332 -7.1015 -2.1714 14 1 4.6361 -7.4565 -3.0588 15 6 3.9970 -7.9356 -1.0702 16 7 3.1170 -7.6509 -0.1338 17 14 5.0626 -9.4623 -0.9174 18 1 5.9651 -9.5557 -2.0931 19 1 5.8740 -9.3774 0.3233 20 1 4.1963 -10.6671 -0.8610 21 6 3.2266 -5.1383 -3.3671 22 6 3.8988 -3.7615 -3.3968 23 6 1.9953 -0.7708 -1.1336 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3633 -1.0252 -0.0709 26 1 -0.3633 0.4513 0.9232 27 1 1.5634 1.9258 0.8329 28 1 1.7325 1.8606 -0.9377 29 1 3.7814 0.8568 1.0907 30 1 3.9105 2.3511 0.1314 31 1 3.8888 1.0354 -1.9560 32 1 5.1999 0.4724 -0.8910 33 1 3.7310 -1.1934 -3.1410 34 1 5.1603 -1.6473 -2.1822 35 1 5.2160 -3.8641 -1.1072 36 1 3.9420 -3.1553 -0.0853 37 1 2.4189 -4.9924 -0.6283 38 1 3.9590 -5.6839 -0.0591 39 1 3.0217 -8.2340 0.6355 40 1 2.1434 -5.0173 -3.3818 41 1 3.5419 -5.7185 -4.2342 42 1 3.5255 -3.1928 -4.2483 43 1 4.9780 -3.8851 -3.4869 44 1 1.5635 -1.7715 -1.1241 45 1 1.7327 -0.2709 -2.0660 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686607239.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:31 Heat of formation + Delta-G solvation = 27.894031 kcal Electronic energy + Delta-G solvation = -21663.918244 eV Core-core repulsion = 18716.549986 eV Total energy + Delta-G solvation = -2947.368258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.33296 -37.73394 -34.82020 -33.35730 -31.75285 -30.41953 -29.85232 -27.01260 -26.67754 -24.59804 -22.90638 -22.72623 -22.33876 -20.84977 -19.51156 -18.97230 -16.71226 -15.76893 -15.37599 -15.08308 -14.58125 -14.51024 -14.47852 -14.12548 -13.55884 -13.43268 -13.28124 -12.92672 -12.84916 -12.63765 -12.17808 -12.10267 -11.82885 -11.38377 -11.34818 -11.05394 -11.01718 -10.76540 -10.64558 -10.37338 -10.29652 -10.21819 -10.12964 -9.96454 -9.66156 -9.47631 -8.46160 -8.27212 -7.71724 -6.61077 -5.73590 -3.14465 3.39739 3.47467 3.49669 3.96758 4.38356 4.54173 4.82183 4.86187 5.01013 5.08620 5.31393 5.40057 5.43137 5.47426 5.50003 5.51382 5.61783 5.67183 5.75672 5.82686 5.88996 5.89585 5.94858 5.99691 6.02058 6.08275 6.11669 6.21802 6.32666 6.39549 6.44293 6.49252 6.65935 6.78000 6.98406 7.13815 7.16818 7.32468 7.70134 7.73283 7.78214 7.88738 8.48419 9.26224 9.89849 10.48575 11.35126 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.029519 B = 0.004371 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.321263 B = 6403.637865 C = 6644.861313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.545 5.545 3 C 0.056 3.944 4 C -0.115 4.115 5 C -0.116 4.116 6 C -0.080 4.080 7 H 0.082 0.918 8 C 0.060 3.940 9 N -0.531 5.531 10 C 0.034 3.966 11 C 0.179 3.821 12 N -0.595 5.595 13 C -0.251 4.251 14 H 0.065 0.935 15 C 0.001 3.999 16 N -0.903 5.903 17 Si 0.901 3.099 18 H -0.278 1.278 19 H -0.289 1.289 20 H -0.290 1.290 21 C 0.149 3.851 22 C 0.045 3.955 23 C 0.072 3.928 24 H 0.020 0.980 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.028 0.972 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.027 0.973 35 H 0.022 0.978 36 H 0.065 0.935 37 H 0.025 0.975 38 H 0.087 0.913 39 H 0.253 0.747 40 H 0.024 0.976 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.026 0.974 44 H 0.091 0.909 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.798 17.940 -1.301 18.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.270 5.270 3 C -0.072 4.072 4 C -0.153 4.153 5 C -0.154 4.154 6 C -0.099 4.099 7 H 0.101 0.899 8 C -0.069 4.069 9 N -0.255 5.255 10 C -0.095 4.095 11 C 0.053 3.947 12 N -0.319 5.319 13 C -0.380 4.380 14 H 0.083 0.917 15 C -0.197 4.197 16 N -0.548 5.548 17 Si 0.731 3.269 18 H -0.204 1.204 19 H -0.216 1.216 20 H -0.217 1.217 21 C 0.023 3.977 22 C -0.085 4.085 23 C -0.056 4.056 24 H 0.039 0.961 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.046 0.954 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.046 0.954 35 H 0.040 0.960 36 H 0.083 0.917 37 H 0.043 0.957 38 H 0.105 0.895 39 H 0.063 0.937 40 H 0.042 0.958 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.110 0.890 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -1.191 17.596 -0.689 17.650 hybrid contribution 1.104 -0.368 -0.712 1.364 sum -0.086 17.228 -1.401 17.285 Atomic orbital electron populations 1.22322 0.87425 1.02203 1.00145 1.61891 1.07434 1.13133 1.44507 1.22071 0.95645 0.89648 0.99852 1.21559 0.94499 0.99725 0.99529 1.21617 0.99849 0.95753 0.98218 1.21225 0.94671 0.94632 0.99416 0.89942 1.22100 0.96723 0.90279 0.97774 1.61951 1.59336 1.00649 1.03593 1.22932 0.96678 0.98023 0.91849 1.20846 0.97482 0.87018 0.89362 1.44129 1.73764 1.13096 1.00896 1.19237 1.28750 0.88855 1.01191 0.91697 1.25011 0.98003 0.97648 0.99070 1.70044 1.33763 1.38873 1.12078 0.86246 0.80132 0.82960 0.77590 1.20356 1.21605 1.21740 1.20954 0.96187 0.90060 0.90531 1.22596 0.98136 0.96849 0.90879 1.22069 0.94907 0.98755 0.89841 0.96104 0.91034 0.91735 0.91249 0.95387 0.91074 0.91865 0.92508 0.91988 0.91778 0.95446 0.95991 0.91717 0.95668 0.89491 0.93712 0.95807 0.92804 0.92286 0.95614 0.89027 0.95712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.62 60.07 0.58 0.88 16 2 N -0.55 -6.93 4.91 -242.88 -1.19 -8.12 16 3 C 0.06 0.60 5.46 -3.83 -0.02 0.57 16 4 C -0.12 -1.17 6.09 -26.65 -0.16 -1.33 16 5 C -0.12 -1.27 5.28 -26.61 -0.14 -1.41 16 6 C -0.08 -1.07 2.28 -90.47 -0.21 -1.28 16 7 H 0.08 1.25 6.20 -51.93 -0.32 0.93 16 8 C 0.06 0.87 4.36 -3.82 -0.02 0.86 16 9 N -0.53 -9.48 4.12 -234.32 -0.97 -10.45 16 10 C 0.03 0.68 5.46 -3.70 -0.02 0.66 16 11 C 0.18 4.41 5.42 -3.60 -0.02 4.39 16 12 N -0.60 -15.38 3.04 -172.02 -0.52 -15.91 16 13 C -0.25 -7.03 9.63 -15.06 -0.15 -7.17 16 14 H 0.07 1.79 7.88 -52.48 -0.41 1.37 16 15 C 0.00 0.03 4.93 -17.43 -0.09 -0.06 16 16 N -0.90 -26.62 11.15 55.49 0.62 -26.01 16 17 Si 0.90 21.96 29.59 -169.99 -5.03 16.93 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 C 0.15 3.25 6.69 -3.60 -0.02 3.22 16 22 C 0.04 0.82 5.62 -3.70 -0.02 0.80 16 23 C 0.07 0.98 4.63 -3.77 -0.02 0.96 16 24 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.07 0.83 8.02 -51.93 -0.42 0.41 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 28 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.87 7.97 -51.93 -0.41 0.45 16 34 H 0.03 0.40 8.12 -51.93 -0.42 -0.02 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 1.20 6.07 -51.93 -0.32 0.89 16 37 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.09 2.38 6.11 -51.93 -0.32 2.06 16 39 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.05 1.12 7.96 -51.93 -0.41 0.71 16 42 H 0.06 0.93 7.99 -51.93 -0.41 0.52 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 1.47 7.69 -51.93 -0.40 1.07 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 337.77 15.07 5.09 5.09 Total: -1.00 -29.61 337.77 -10.78 -40.39 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -8.48 Total: -3.03 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -0.30 Total: 1.11 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: -2.06 Total: -60.48 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.61 -10.78 -40.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686607239.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.287 kcal (2) G-P(sol) polarization free energy of solvation -29.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds