Wall clock time and date at job start Mon Mar 30 2020 06:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46852 * 110.99807 * 2 1 4 4 C 1.53036 * 109.51854 * 174.16053 * 3 2 1 5 5 C 1.53118 * 109.28436 * 59.17830 * 4 3 2 6 6 C 1.53112 * 109.21079 * 302.31407 * 5 4 3 7 7 H 1.08999 * 109.50127 * 297.74199 * 6 5 4 8 8 C 1.53005 * 109.50632 * 177.62231 * 6 5 4 9 9 N 1.46903 * 109.47338 * 174.99691 * 8 6 5 10 10 C 1.46902 * 110.99918 * 294.30666 * 9 8 6 11 11 C 1.53241 * 109.33734 * 172.74890 * 10 9 8 12 12 N 1.47080 * 108.52094 * 53.82825 * 11 10 9 13 13 C 1.36934 * 120.87705 * 128.84237 * 12 11 10 14 14 H 1.08003 * 119.99708 * 206.61355 * 13 12 11 15 15 C 1.38811 * 120.00584 * 26.61052 * 13 12 11 16 16 N 1.31624 * 119.99780 * 17.05777 * 15 13 12 17 17 Si 1.86800 * 120.00240 * 197.05004 * 15 13 12 18 18 H 1.48501 * 109.46819 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46989 * 120.00122 * 17 15 13 20 20 H 1.48494 * 109.47520 * 240.00377 * 17 15 13 21 21 C 1.47078 * 118.23819 * 308.81253 * 12 11 10 22 22 C 1.46896 * 110.99888 * 170.00236 * 9 8 6 23 23 C 1.46841 * 111.00346 * 235.78777 * 2 1 3 24 24 H 1.09000 * 109.47067 * 56.04703 * 1 2 3 25 25 H 1.08998 * 109.46909 * 176.04462 * 1 2 3 26 26 H 1.08996 * 109.47207 * 296.05090 * 1 2 3 27 27 H 1.08998 * 109.46310 * 54.14267 * 3 2 1 28 28 H 1.08998 * 109.45098 * 294.16913 * 3 2 1 29 29 H 1.09001 * 109.50751 * 299.23132 * 4 3 2 30 30 H 1.09008 * 109.53440 * 179.13702 * 4 3 2 31 31 H 1.09002 * 109.52086 * 62.24539 * 5 4 3 32 32 H 1.08991 * 109.52318 * 182.37470 * 5 4 3 33 33 H 1.08995 * 109.47041 * 295.00130 * 8 6 5 34 34 H 1.09003 * 109.46474 * 55.00147 * 8 6 5 35 35 H 1.09005 * 109.48831 * 292.70722 * 10 9 8 36 36 H 1.08997 * 109.49752 * 52.78371 * 10 9 8 37 37 H 1.08995 * 109.62464 * 294.11383 * 11 10 9 38 38 H 1.09002 * 109.78742 * 173.63323 * 11 10 9 39 39 H 0.96994 * 119.99535 * 179.97438 * 16 15 13 40 40 H 1.09004 * 109.63048 * 291.47811 * 21 12 11 41 41 H 1.08994 * 109.78910 * 170.99529 * 21 12 11 42 42 H 1.08996 * 109.49360 * 307.21554 * 22 9 8 43 43 H 1.09005 * 109.49110 * 67.26359 * 22 9 8 44 44 H 1.09000 * 109.46141 * 305.85903 * 23 2 1 45 45 H 1.09001 * 109.46441 * 65.83021 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3710 0.0000 4 6 3.5181 1.3342 0.1468 5 6 4.1189 0.5369 -1.0143 6 6 3.5196 -0.8720 -1.0214 7 1 3.7828 -1.3840 -0.0959 8 6 4.0708 -1.6557 -2.2143 9 7 3.5899 -3.0424 -2.1537 10 6 4.1402 -3.7398 -0.9837 11 6 3.4778 -5.1157 -0.8551 12 7 3.6299 -5.8286 -2.1326 13 6 4.1332 -7.1015 -2.1714 14 1 4.6361 -7.4565 -3.0588 15 6 3.9970 -7.9356 -1.0702 16 7 3.1170 -7.6509 -0.1338 17 14 5.0626 -9.4623 -0.9174 18 1 5.9651 -9.5557 -2.0931 19 1 5.8740 -9.3774 0.3233 20 1 4.1963 -10.6671 -0.8610 21 6 3.2266 -5.1383 -3.3671 22 6 3.8988 -3.7615 -3.3968 23 6 1.9953 -0.7708 -1.1336 24 1 -0.3633 0.5740 -0.8524 25 1 -0.3633 -1.0252 -0.0709 26 1 -0.3633 0.4513 0.9232 27 1 1.5634 1.9258 0.8329 28 1 1.7325 1.8606 -0.9377 29 1 3.7814 0.8568 1.0907 30 1 3.9105 2.3511 0.1314 31 1 3.8888 1.0354 -1.9560 32 1 5.1999 0.4724 -0.8910 33 1 3.7310 -1.1934 -3.1410 34 1 5.1603 -1.6473 -2.1822 35 1 5.2160 -3.8641 -1.1072 36 1 3.9420 -3.1553 -0.0853 37 1 2.4189 -4.9924 -0.6283 38 1 3.9590 -5.6839 -0.0591 39 1 3.0217 -8.2340 0.6355 40 1 2.1434 -5.0173 -3.3818 41 1 3.5419 -5.7185 -4.2342 42 1 3.5255 -3.1928 -4.2483 43 1 4.9780 -3.8851 -3.4869 44 1 1.5635 -1.7715 -1.1241 45 1 1.7327 -0.2709 -2.0660 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686607239.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:31 Heat of formation + Delta-G solvation = 8.633000 kcal Electronic energy + Delta-G solvation = -21664.753465 eV Core-core repulsion = 18716.549986 eV Total energy + Delta-G solvation = -2948.203479 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.45886 -39.18692 -36.42949 -34.59063 -33.30794 -31.84096 -31.62326 -28.62613 -27.63220 -26.13142 -24.45509 -24.22644 -23.59700 -21.98839 -20.81834 -20.44046 -18.69947 -17.05505 -16.70373 -16.31646 -16.25371 -15.70157 -15.49388 -15.37291 -15.31445 -15.04976 -14.96935 -14.41598 -14.02570 -13.66805 -13.32568 -13.29027 -13.06314 -12.97996 -12.85057 -12.64257 -12.38652 -12.29805 -12.08261 -11.99734 -11.81340 -11.72763 -11.50906 -11.25442 -11.20653 -11.05585 -10.59136 -9.21790 -9.19487 -8.67535 -7.87481 -5.32372 1.45686 1.47058 1.58070 2.50665 3.01155 3.05089 3.27991 3.68861 3.90057 3.91731 3.99705 4.18031 4.29787 4.37490 4.38249 4.47767 4.50783 4.56484 4.59607 4.64902 4.68567 4.73080 4.78896 4.84861 4.85691 4.91800 4.94970 5.02543 5.06068 5.07951 5.14037 5.19518 5.26579 5.37017 5.42161 5.53677 5.61143 5.69147 6.18023 6.22369 6.26893 6.33424 6.38144 7.13235 7.84162 8.38703 9.19514 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.029519 B = 0.004371 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.321263 B = 6403.637865 C = 6644.861313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.564 5.564 3 C 0.055 3.945 4 C -0.113 4.113 5 C -0.111 4.111 6 C -0.076 4.076 7 H 0.060 0.940 8 C 0.065 3.935 9 N -0.538 5.538 10 C 0.055 3.945 11 C 0.188 3.812 12 N -0.614 5.614 13 C -0.265 4.265 14 H 0.068 0.932 15 C -0.051 4.051 16 N -0.936 5.936 17 Si 0.969 3.031 18 H -0.266 1.266 19 H -0.289 1.289 20 H -0.291 1.291 21 C 0.144 3.856 22 C 0.056 3.944 23 C 0.080 3.920 24 H 0.029 0.971 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.034 0.966 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.032 0.968 35 H 0.015 0.985 36 H 0.077 0.923 37 H -0.005 1.005 38 H 0.054 0.946 39 H 0.250 0.750 40 H 0.014 0.986 41 H 0.060 0.940 42 H 0.094 0.906 43 H 0.022 0.978 44 H 0.059 0.941 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.158 19.976 -2.270 20.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.288 5.288 3 C -0.073 4.073 4 C -0.151 4.151 5 C -0.149 4.149 6 C -0.095 4.095 7 H 0.079 0.921 8 C -0.063 4.063 9 N -0.262 5.262 10 C -0.074 4.074 11 C 0.062 3.938 12 N -0.338 5.338 13 C -0.395 4.395 14 H 0.085 0.915 15 C -0.247 4.247 16 N -0.583 5.583 17 Si 0.797 3.203 18 H -0.191 1.191 19 H -0.216 1.216 20 H -0.218 1.218 21 C 0.019 3.981 22 C -0.073 4.073 23 C -0.048 4.048 24 H 0.048 0.952 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.051 0.949 35 H 0.033 0.967 36 H 0.095 0.905 37 H 0.013 0.987 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.032 0.968 41 H 0.078 0.922 42 H 0.112 0.888 43 H 0.040 0.960 44 H 0.078 0.922 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -0.232 19.664 -1.685 19.737 hybrid contribution 0.729 -0.968 -0.436 1.288 sum 0.497 18.696 -2.121 18.823 Atomic orbital electron populations 1.22329 0.86754 1.01696 1.01243 1.61890 1.08294 1.14553 1.44099 1.22153 0.96014 0.88423 1.00676 1.21566 0.94125 1.00814 0.98573 1.21580 1.00126 0.93976 0.99196 1.21165 0.94563 0.96002 0.97784 0.92117 1.22162 0.97025 0.87904 0.99236 1.61887 1.59625 1.02178 1.02556 1.22538 0.95481 0.95728 0.93695 1.20572 0.95627 0.89135 0.88422 1.44410 1.74057 1.13029 1.02336 1.19586 1.28647 0.89870 1.01370 0.91453 1.25802 0.99202 1.00797 0.98856 1.70208 1.35368 1.40117 1.12579 0.85190 0.78379 0.79096 0.77682 1.19062 1.21610 1.21802 1.21119 0.95949 0.91984 0.89093 1.22450 0.97516 0.95207 0.92176 1.21882 0.94989 0.97392 0.90561 0.95206 0.92380 0.90388 0.90062 0.94743 0.92160 0.89472 0.91336 0.91253 0.89839 0.94936 0.96680 0.90524 0.98692 0.92776 0.94083 0.96782 0.92183 0.88814 0.95977 0.92194 0.95215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 9.62 127.69 1.23 1.82 16 2 N -0.56 -13.64 4.91 -922.32 -4.53 -18.17 16 3 C 0.05 1.03 5.46 86.32 0.47 1.50 16 4 C -0.11 -1.97 6.09 30.65 0.19 -1.78 16 5 C -0.11 -2.10 5.28 30.67 0.16 -1.94 16 6 C -0.08 -1.90 2.28 -10.70 -0.02 -1.93 16 7 H 0.06 1.80 6.20 -2.39 -0.01 1.78 16 8 C 0.06 1.73 4.36 86.30 0.38 2.10 16 9 N -0.54 -18.69 4.12 -895.24 -3.69 -22.38 16 10 C 0.05 2.22 5.46 86.38 0.47 2.69 16 11 C 0.19 9.67 5.42 86.35 0.47 10.14 16 12 N -0.61 -32.41 3.04 -698.14 -2.12 -34.53 16 13 C -0.26 -15.06 9.63 84.03 0.81 -14.25 16 14 H 0.07 3.72 7.88 -2.91 -0.02 3.70 16 15 C -0.05 -2.95 4.93 84.86 0.42 -2.53 16 16 N -0.94 -57.10 11.15 21.65 0.24 -56.86 16 17 Si 0.97 45.80 29.59 68.60 2.03 47.83 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 19 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 20 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 21 C 0.14 6.25 6.69 86.35 0.58 6.83 16 22 C 0.06 1.94 5.62 86.38 0.49 2.43 16 23 C 0.08 2.10 4.63 86.37 0.40 2.50 16 24 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.06 1.36 8.02 -2.39 -0.02 1.34 16 26 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.08 1.33 8.12 -2.39 -0.02 1.31 16 28 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.95 7.97 -2.39 -0.02 1.93 16 34 H 0.03 0.86 8.12 -2.39 -0.02 0.84 16 35 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 36 H 0.08 2.90 6.07 -2.39 -0.01 2.88 16 37 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 38 H 0.05 3.11 6.11 -2.39 -0.01 3.09 16 39 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 40 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.06 2.48 7.96 -2.39 -0.02 2.46 16 42 H 0.09 2.65 7.99 -2.39 -0.02 2.64 16 43 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 44 H 0.06 1.95 7.69 -2.39 -0.02 1.93 16 45 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -65.09 337.77 -1.12 -66.21 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: 0.92 Total: 10.32 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 6.03 Total: 7.58 kcal Atomic # 7 Polarization: -121.84 SS G_CDS: -10.10 Total: -131.94 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -65.09 -1.12 -66.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686607239.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.839 kcal (2) G-P(sol) polarization free energy of solvation -65.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds