Wall clock time and date at job start Mon Mar 30 2020 06:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46954 * 111.00126 * 2 1 4 4 C 1.53049 * 109.36905 * 176.81350 * 3 2 1 5 5 N 1.46962 * 109.36327 * 58.39700 * 4 3 2 6 6 C 1.46900 * 110.99910 * 176.81156 * 5 4 3 7 7 C 1.53000 * 109.47439 * 313.80523 * 6 5 4 8 8 C 1.52996 * 109.46898 * 179.97438 * 7 6 5 9 9 N 1.46505 * 109.46759 * 179.97438 * 8 7 6 10 10 C 1.36932 * 119.99827 * 269.99543 * 9 8 7 11 11 H 1.08006 * 120.00046 * 144.92410 * 10 9 8 12 12 C 1.38819 * 120.00476 * 324.92502 * 10 9 8 13 13 N 1.31619 * 119.99669 * 337.94932 * 12 10 9 14 14 Si 1.86795 * 120.00300 * 157.94255 * 12 10 9 15 15 H 1.48508 * 109.46785 * 60.00345 * 14 12 10 16 16 H 1.48501 * 109.47308 * 179.97438 * 14 12 10 17 17 H 1.48492 * 109.47612 * 300.00418 * 14 12 10 18 18 C 1.46500 * 120.00089 * 90.00044 * 9 8 7 19 19 C 1.52998 * 117.49886 * 183.23711 * 18 9 8 20 20 C 1.52996 * 117.49671 * 114.57699 * 18 9 8 21 21 C 1.46954 * 110.88211 * 300.68542 * 5 4 3 22 22 C 1.46954 * 111.00081 * 236.20254 * 2 1 3 23 23 H 1.09001 * 109.47230 * 183.80519 * 1 2 3 24 24 H 1.09002 * 109.46993 * 303.79586 * 1 2 3 25 25 H 1.08993 * 109.47199 * 63.79927 * 1 2 3 26 26 H 1.09000 * 109.48848 * 296.78119 * 3 2 1 27 27 H 1.09004 * 109.49278 * 56.84389 * 3 2 1 28 28 H 1.08998 * 109.49036 * 298.43797 * 4 3 2 29 29 H 1.08996 * 109.49128 * 178.36648 * 4 3 2 30 30 H 1.09004 * 109.46682 * 73.80781 * 6 5 4 31 31 H 1.09002 * 109.46903 * 193.79663 * 6 5 4 32 32 H 1.08998 * 109.46745 * 299.99687 * 7 6 5 33 33 H 1.08996 * 109.47111 * 59.99836 * 7 6 5 34 34 H 1.08998 * 109.47172 * 299.99432 * 8 7 6 35 35 H 1.08996 * 109.47368 * 60.00000 * 8 7 6 36 36 H 0.96999 * 120.00204 * 175.76813 * 13 12 10 37 37 H 1.09004 * 115.54892 * 328.90391 * 18 9 8 38 38 H 1.09006 * 117.49800 * 359.97438 * 19 18 9 39 39 H 1.09000 * 117.50196 * 145.01670 * 19 18 9 40 40 H 1.09004 * 117.49484 * 214.97921 * 20 18 9 41 41 H 1.08998 * 117.50640 * 359.97438 * 20 18 9 42 42 H 1.09000 * 109.48848 * 299.35031 * 21 5 4 43 43 H 1.09001 * 109.50591 * 179.29826 * 21 5 4 44 44 H 1.09010 * 109.48776 * 303.15190 * 22 2 1 45 45 H 1.08999 * 109.48926 * 63.19180 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5234 1.3291 0.0803 5 7 4.0501 0.5658 -1.0598 6 6 5.5191 0.5659 -1.0599 7 6 6.0291 1.9865 -0.8094 8 6 7.5590 1.9863 -0.8088 9 7 8.0474 3.3467 -0.5696 10 6 8.2761 4.1877 -1.6257 11 1 8.0803 5.2452 -1.5263 12 6 8.7596 3.6811 -2.8244 13 7 9.3986 2.5306 -2.8425 14 14 8.5031 4.6322 -4.4115 15 1 9.1479 5.9653 -4.2994 16 1 9.1098 3.8830 -5.5411 17 1 7.0486 4.8048 -4.6558 18 6 8.2911 3.8073 0.7996 19 6 8.7277 5.2614 0.9886 20 6 9.7352 4.1269 1.1909 21 6 3.5234 -0.8061 -1.0598 22 6 1.9956 -0.7631 -1.1401 23 1 -0.3634 -1.0254 0.0682 24 1 -0.3633 0.5716 0.8540 25 1 -0.3633 0.4537 -0.9220 26 1 1.6937 1.8773 -0.9173 27 1 1.6013 1.9129 0.8603 28 1 3.8254 0.8479 1.0105 29 1 3.9177 2.3449 0.0512 30 1 5.8824 -0.0947 -0.2727 31 1 5.8823 0.2143 -2.0256 32 1 5.6657 2.6470 -1.5966 33 1 5.6658 2.3379 0.1563 34 1 7.9220 1.3259 -0.0214 35 1 7.9227 1.6347 -1.7743 36 1 9.6825 2.1467 -3.6869 37 1 7.6471 3.3718 1.5637 38 1 8.8341 5.8753 0.0942 39 1 8.3714 5.7825 1.8772 40 1 10.0413 3.9020 2.2126 41 1 10.5041 3.9941 0.4298 42 1 3.8253 -1.3115 -0.1425 43 1 3.9177 -1.3473 -1.9199 44 1 1.6013 -1.7790 -1.1110 45 1 1.6933 -0.2823 -2.0704 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686611469.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:59 Heat of formation + Delta-G solvation = 61.225715 kcal Electronic energy + Delta-G solvation = -21164.333884 eV Core-core repulsion = 18218.410996 eV Total energy + Delta-G solvation = -2945.922888 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.26565 -37.09130 -35.80567 -33.66818 -31.74391 -30.86458 -29.73822 -27.69481 -25.04220 -24.05156 -23.53157 -22.43789 -21.34883 -20.43211 -19.64042 -19.46417 -16.53643 -15.90443 -15.39811 -15.17405 -14.91121 -14.86419 -14.72199 -14.35180 -13.98309 -13.86224 -13.21732 -12.65681 -12.53950 -12.22343 -12.15674 -11.81571 -11.68455 -11.30233 -11.20323 -11.01960 -10.84609 -10.72330 -10.69088 -10.56673 -10.37268 -10.03991 -9.87058 -9.58081 -9.44568 -9.21304 -8.48068 -8.41818 -8.05186 -6.52831 -5.74431 -3.35185 3.38508 3.44591 3.47357 3.84523 4.11050 4.48715 4.88563 4.95009 4.97012 5.10318 5.22868 5.28696 5.36155 5.39931 5.46614 5.47585 5.53978 5.66879 5.70234 5.76239 5.91013 5.93594 5.95165 6.04530 6.10139 6.15301 6.18195 6.32669 6.51433 6.52678 6.61323 6.75216 6.79971 6.90445 6.91864 7.07566 7.23756 7.26975 7.33840 7.40746 7.74168 7.83451 8.51173 9.19337 9.82811 10.38474 11.20646 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.019507 B = 0.004660 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.064357 B = 6007.002155 C = 6703.453863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.056 3.944 4 C 0.053 3.947 5 N -0.540 5.540 6 C 0.061 3.939 7 C -0.134 4.134 8 C 0.148 3.852 9 N -0.552 5.552 10 C -0.256 4.256 11 H 0.064 0.936 12 C 0.012 3.988 13 N -0.885 5.885 14 Si 0.895 3.105 15 H -0.282 1.282 16 H -0.290 1.290 17 H -0.282 1.282 18 C 0.122 3.878 19 C -0.197 4.197 20 C -0.223 4.223 21 C 0.056 3.944 22 C 0.058 3.942 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.024 0.976 26 H 0.042 0.958 27 H 0.076 0.924 28 H 0.038 0.962 29 H 0.091 0.909 30 H 0.027 0.973 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.022 0.978 35 H 0.100 0.900 36 H 0.254 0.746 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.039 0.961 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.474 -5.533 5.398 15.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.072 4.072 4 C -0.075 4.075 5 N -0.265 5.265 6 C -0.067 4.067 7 C -0.174 4.174 8 C 0.021 3.979 9 N -0.268 5.268 10 C -0.385 4.385 11 H 0.082 0.918 12 C -0.189 4.189 13 N -0.527 5.527 14 Si 0.724 3.276 15 H -0.208 1.208 16 H -0.216 1.216 17 H -0.208 1.208 18 C 0.013 3.987 19 C -0.235 4.235 20 C -0.264 4.264 21 C -0.072 4.072 22 C -0.070 4.070 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.043 0.957 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.056 0.944 29 H 0.109 0.891 30 H 0.045 0.955 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.040 0.960 35 H 0.118 0.882 36 H 0.064 0.936 37 H 0.102 0.898 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.057 0.943 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -13.347 -5.622 5.229 15.397 hybrid contribution -0.072 0.460 -0.825 0.947 sum -13.419 -5.162 4.404 15.037 Atomic orbital electron populations 1.22331 0.87552 1.01942 1.00436 1.62173 1.07523 1.14475 1.43047 1.22215 0.95327 0.88806 1.00812 1.22245 0.93278 0.99912 0.92079 1.62236 1.08950 1.12806 1.42508 1.22132 0.85010 0.98748 1.00769 1.22310 1.00255 0.94075 1.00747 1.20919 0.88933 0.85321 1.02720 1.43408 1.72526 1.11738 0.99161 1.19023 1.37271 0.91625 0.90621 0.91799 1.25089 0.96589 0.97747 0.99439 1.70040 1.37076 1.20185 1.25387 0.86489 0.78170 0.79538 0.83359 1.20780 1.21617 1.20821 1.21201 0.93511 0.95123 0.88886 1.23024 1.05884 0.92837 1.01759 1.23364 0.97057 1.05885 1.00117 1.22130 0.93838 0.90391 1.00884 1.22162 0.95030 0.98010 0.91833 0.91565 0.91495 0.95705 0.94021 0.90585 0.94419 0.89083 0.95465 0.90759 0.91449 0.93641 0.95975 0.88214 0.93571 0.89769 0.88533 0.90862 0.91343 0.89080 0.94313 0.90414 0.90676 0.94050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.60 60.06 0.58 0.82 16 2 N -0.55 -6.49 4.97 -242.76 -1.21 -7.70 16 3 C 0.06 0.70 5.62 -3.77 -0.02 0.68 16 4 C 0.05 0.76 4.93 -3.76 -0.02 0.74 16 5 N -0.54 -8.26 4.86 -234.47 -1.14 -9.40 16 6 C 0.06 1.03 5.28 -3.82 -0.02 1.01 16 7 C -0.13 -2.60 4.80 -26.73 -0.13 -2.73 16 8 C 0.15 3.38 5.34 -4.04 -0.02 3.36 16 9 N -0.55 -13.59 2.78 -165.66 -0.46 -14.05 16 10 C -0.26 -6.87 8.63 -15.06 -0.13 -7.00 16 11 H 0.06 1.72 6.55 -52.48 -0.34 1.38 16 12 C 0.01 0.31 4.96 -17.43 -0.09 0.23 16 13 N -0.88 -25.06 11.33 55.49 0.63 -24.43 16 14 Si 0.90 21.51 29.61 -169.99 -5.03 16.47 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 18 C 0.12 2.64 6.56 -67.93 -0.45 2.20 16 19 C -0.20 -3.95 9.80 -26.69 -0.26 -4.21 16 20 C -0.22 -4.64 10.36 -26.70 -0.28 -4.92 16 21 C 0.06 0.73 5.58 -3.77 -0.02 0.71 16 22 C 0.06 0.67 5.62 -3.77 -0.02 0.65 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 25 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.83 8.13 -51.93 -0.42 0.41 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 1.37 5.99 -51.93 -0.31 1.06 16 30 H 0.03 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 33 H 0.04 0.84 6.26 -51.93 -0.33 0.52 16 34 H 0.02 0.49 8.07 -51.93 -0.42 0.07 16 35 H 0.10 2.59 5.35 -51.93 -0.28 2.31 16 36 H 0.25 6.98 8.32 -40.82 -0.34 6.65 16 37 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 38 H 0.10 2.11 6.37 -51.93 -0.33 1.78 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 42 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 45 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 347.19 15.07 5.23 5.23 Total: -1.00 -28.37 347.19 -11.18 -39.55 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -8.33 Total: 2.79 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -0.88 Total: -8.47 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -2.18 Total: -55.58 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.37 -11.18 -39.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686611469.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.774 kcal (2) G-P(sol) polarization free energy of solvation -28.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds