Wall clock time and date at job start Mon Mar 30 2020 04:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47038 * 2 1 4 4 N 1.46899 * 109.47201 * 120.00082 * 2 1 3 5 5 C 1.46907 * 111.00059 * 162.81548 * 4 2 1 6 6 C 1.50701 * 109.47251 * 288.29352 * 5 4 2 7 7 H 1.08005 * 120.00188 * 4.88082 * 6 5 4 8 8 C 1.37873 * 120.00351 * 184.87812 * 6 5 4 9 9 N 1.31516 * 120.00293 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 119.99762 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47264 * 89.99766 * 10 8 6 12 12 H 1.48501 * 109.47416 * 209.99880 * 10 8 6 13 13 H 1.48499 * 109.47142 * 330.00020 * 10 8 6 14 14 C 1.46896 * 111.00176 * 286.76891 * 4 2 1 15 15 C 1.50699 * 109.47041 * 77.97235 * 14 4 2 16 16 N 1.31069 * 126.66310 * 251.38069 * 15 14 4 17 17 N 1.28847 * 107.99362 * 179.97438 * 16 15 14 18 18 N 1.28743 * 109.39260 * 0.02562 * 17 16 15 19 19 N 1.29020 * 108.81167 * 359.97438 * 18 17 16 20 20 C 1.46498 * 126.43579 * 180.26331 * 19 18 17 21 21 C 1.53009 * 109.47135 * 299.68864 * 20 19 18 22 22 C 1.53002 * 109.47020 * 59.68945 * 20 19 18 23 23 H 1.08996 * 109.47138 * 310.12263 * 1 2 3 24 24 H 1.08999 * 109.47180 * 70.12451 * 1 2 3 25 25 H 1.09007 * 109.47048 * 190.12245 * 1 2 3 26 26 H 1.09003 * 109.47343 * 240.00096 * 2 1 3 27 27 H 1.08999 * 109.46939 * 171.78867 * 3 2 1 28 28 H 1.08995 * 109.47259 * 291.78942 * 3 2 1 29 29 H 1.08997 * 109.46996 * 51.78928 * 3 2 1 30 30 H 1.09000 * 109.46691 * 48.29117 * 5 4 2 31 31 H 1.08997 * 109.47175 * 168.29072 * 5 4 2 32 32 H 0.97004 * 119.99718 * 180.02562 * 9 8 6 33 33 H 1.08996 * 109.47043 * 317.97762 * 14 4 2 34 34 H 1.09000 * 109.47147 * 197.97013 * 14 4 2 35 35 H 1.09000 * 109.46895 * 179.68896 * 20 19 18 36 36 H 1.09005 * 109.46867 * 59.99888 * 21 20 19 37 37 H 1.09000 * 109.46763 * 180.02562 * 21 20 19 38 38 H 1.09002 * 109.46831 * 300.00264 * 21 20 19 39 39 H 1.09000 * 109.47247 * 299.99736 * 22 20 19 40 40 H 1.08997 * 109.46989 * 60.00157 * 22 20 19 41 41 H 1.08999 * 109.46798 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4305 -1.0732 1.0484 6 6 3.5423 -2.2051 0.0598 7 1 2.6654 -2.5495 -0.4683 8 6 4.7641 -2.8011 -0.1706 9 7 4.8616 -3.7892 -1.0330 10 14 6.2807 -2.2058 0.7432 11 1 6.4268 -2.9682 2.0091 12 1 7.4828 -2.4162 -0.1029 13 1 6.1381 -0.7599 1.0499 14 6 1.8221 0.1305 2.4000 15 6 0.3791 0.0561 2.8282 16 7 -0.5153 1.0095 2.7339 17 7 -1.6274 0.5600 3.2044 18 7 -1.4652 -0.6554 3.5969 19 7 -0.2414 -1.0024 3.3815 20 6 0.3585 -2.3057 3.6779 21 6 0.2571 -2.5842 5.1790 22 6 -0.3851 -3.3970 2.9053 23 1 -0.3633 0.6622 0.7858 24 1 -0.3633 0.3494 -0.9664 25 1 -0.3633 -1.0117 0.1806 26 1 1.8934 -0.5138 -0.8900 27 1 3.1200 1.4460 0.1468 28 1 1.8014 1.9122 -0.9542 29 1 1.5617 1.9969 0.8075 30 1 4.0010 -0.2176 0.6871 31 1 3.8258 -1.3926 2.0127 32 1 5.7211 -4.2087 -1.1948 33 1 2.0823 1.1654 2.1779 34 1 2.4590 -0.2400 3.2033 35 1 1.4069 -2.2993 3.3796 36 1 -0.7913 -2.5905 5.4773 37 1 0.7039 -3.5537 5.3996 38 1 0.7868 -1.8067 5.7294 39 1 -1.4334 -3.4033 3.2036 40 1 -0.3127 -3.1985 1.8359 41 1 0.0610 -4.3667 3.1262 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686618210.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:14 Heat of formation + Delta-G solvation = 124.664706 kcal Electronic energy + Delta-G solvation = -21988.260986 eV Core-core repulsion = 18941.548676 eV Total energy + Delta-G solvation = -3046.712310 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.175 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.91711 -38.22687 -36.77051 -33.05595 -32.54135 -32.16758 -31.11767 -28.32034 -27.41632 -26.79743 -25.48466 -24.39827 -22.40968 -21.86196 -20.72037 -19.14433 -17.22420 -16.85069 -16.69145 -15.57575 -15.06844 -14.66891 -14.62223 -14.12655 -13.54837 -13.39999 -13.24932 -12.93444 -12.75674 -12.52816 -12.37823 -12.19660 -11.89285 -11.73291 -11.65313 -11.39075 -11.24055 -11.12658 -11.01326 -10.77700 -10.72858 -10.64740 -10.37795 -10.19598 -10.04669 -9.53719 -9.35279 -8.70033 -7.69174 -6.17909 -4.16460 1.55243 2.26262 2.49859 3.16295 3.25349 3.26622 4.13461 4.28813 4.38215 4.58959 4.73843 4.88798 4.99746 5.14491 5.33969 5.37954 5.43560 5.48235 5.52922 5.63485 5.70932 5.73689 5.75899 5.80098 5.90947 6.01966 6.12128 6.15459 6.20538 6.30860 6.38275 6.50588 6.54091 6.62549 6.82879 6.87392 7.38401 7.65860 7.76919 8.48033 8.90928 8.92576 9.42440 10.94876 Molecular weight = 267.18amu Principal moments of inertia in cm(-1) A = 0.019445 B = 0.007009 C = 0.006002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.599506 B = 3993.988272 C = 4663.744524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.083 3.917 3 C -0.184 4.184 4 N -0.518 5.518 5 C 0.163 3.837 6 C -0.510 4.510 7 H 0.081 0.919 8 C 0.072 3.928 9 N -0.896 5.896 10 Si 0.872 3.128 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.268 1.268 14 C 0.110 3.890 15 C 0.215 3.785 16 N -0.312 5.312 17 N -0.090 5.090 18 N -0.105 5.105 19 N -0.286 5.286 20 C 0.141 3.859 21 C -0.163 4.163 22 C -0.157 4.157 23 H 0.069 0.931 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.098 0.902 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.059 0.941 30 H -0.002 1.002 31 H 0.024 0.976 32 H 0.265 0.735 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.128 0.872 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.375 3.802 9.275 11.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.025 4.025 3 C -0.243 4.243 4 N -0.243 5.243 5 C 0.037 3.963 6 C -0.548 4.548 7 H 0.099 0.901 8 C -0.131 4.131 9 N -0.534 5.534 10 Si 0.699 3.301 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.192 1.192 14 C -0.021 4.021 15 C -0.063 4.063 16 N -0.163 5.163 17 N -0.083 5.083 18 N -0.091 5.091 19 N -0.088 5.088 20 C 0.039 3.961 21 C -0.221 4.221 22 C -0.215 4.215 23 H 0.087 0.913 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.116 0.884 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.016 0.984 31 H 0.042 0.958 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.146 0.854 36 H 0.090 0.910 37 H 0.105 0.895 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.810 3.768 9.422 12.221 hybrid contribution 2.234 0.349 0.195 2.269 sum -4.576 4.117 9.617 11.418 Atomic orbital electron populations 1.22202 0.95745 1.01754 1.01934 1.21644 0.94352 0.92082 0.94450 1.22449 1.01401 0.98499 1.01924 1.62195 1.22959 1.38950 1.00188 1.20262 0.82431 0.96229 0.97374 1.20927 0.96076 1.15280 1.22518 0.90076 1.24870 0.98510 0.94655 0.95039 1.69881 1.25291 1.23658 1.34619 0.86928 0.83349 0.79692 0.80161 1.20157 1.21135 1.19226 1.20761 0.84757 1.00599 0.96015 1.26050 0.99513 0.83764 0.96982 1.74879 0.96751 1.25327 1.19354 1.78519 1.16934 1.01198 1.11668 1.78701 0.99467 1.10744 1.20165 1.48631 1.07080 1.13825 1.39305 1.21918 0.99527 0.77504 0.97107 1.22195 1.03801 1.03201 0.92900 1.22084 1.00515 0.97345 1.01575 0.91270 0.93118 0.93176 0.88374 0.92376 0.92454 0.92258 0.98404 0.95787 0.92529 0.89719 0.88901 0.85427 0.90997 0.89549 0.92003 0.91557 0.90636 0.89730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 8.38 37.16 0.31 -2.39 16 2 C 0.08 1.47 2.76 -67.71 -0.19 1.28 16 3 C -0.18 -2.87 8.10 37.16 0.30 -2.57 16 4 N -0.52 -9.29 4.35 -229.52 -1.00 -10.29 16 5 C 0.16 3.38 3.71 -4.97 -0.02 3.37 16 6 C -0.51 -12.99 8.99 -34.44 -0.31 -13.30 16 7 H 0.08 2.30 7.73 -52.48 -0.41 1.89 16 8 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 9 N -0.90 -25.73 13.96 55.43 0.77 -24.95 16 10 Si 0.87 19.67 27.37 -169.99 -4.65 15.02 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 13 H -0.27 -5.76 6.69 56.52 0.38 -5.38 16 14 C 0.11 1.68 4.53 -4.98 -0.02 1.65 16 15 C 0.22 3.41 5.69 -155.43 -0.88 2.52 16 16 N -0.31 -5.41 10.19 32.70 0.33 -5.08 16 17 N -0.09 -1.61 13.43 60.35 0.81 -0.80 16 18 N -0.10 -1.72 13.04 60.35 0.79 -0.94 16 19 N -0.29 -4.27 3.06 -51.80 -0.16 -4.42 16 20 C 0.14 1.73 3.64 -67.93 -0.25 1.49 16 21 C -0.16 -1.57 9.41 37.16 0.35 -1.22 16 22 C -0.16 -1.90 9.40 37.16 0.35 -1.55 16 23 H 0.07 1.20 4.42 -51.93 -0.23 0.97 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.10 1.99 6.94 -51.93 -0.36 1.63 16 27 H 0.06 0.93 6.69 -51.93 -0.35 0.58 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.88 6.41 -51.93 -0.33 0.55 16 30 H 0.00 -0.04 6.00 -51.93 -0.31 -0.35 16 31 H 0.02 0.48 6.83 -51.93 -0.35 0.13 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.09 1.24 5.31 -51.93 -0.28 0.96 16 34 H 0.09 1.25 7.46 -51.93 -0.39 0.86 16 35 H 0.13 1.65 7.27 -51.93 -0.38 1.27 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 323.05 15.07 4.87 4.87 Total: -1.00 -28.93 323.05 -5.04 -33.96 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.35 Total: 1.53 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -0.46 Total: -8.91 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 1.55 Total: -46.47 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.65 Total: 15.02 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.93 -5.04 -33.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686618210.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.629 kcal (2) G-P(sol) polarization free energy of solvation -28.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds