Wall clock time and date at job start Mon Mar 30 2020 04:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47038 * 2 1 4 4 N 1.46899 * 109.47201 * 120.00082 * 2 1 3 5 5 C 1.46907 * 111.00059 * 162.81548 * 4 2 1 6 6 C 1.50701 * 109.47251 * 288.29352 * 5 4 2 7 7 H 1.08005 * 120.00188 * 4.88082 * 6 5 4 8 8 C 1.37873 * 120.00351 * 184.87812 * 6 5 4 9 9 N 1.31516 * 120.00293 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 119.99762 * 0.02562 * 8 6 5 11 11 H 1.48500 * 109.47264 * 89.99766 * 10 8 6 12 12 H 1.48501 * 109.47416 * 209.99880 * 10 8 6 13 13 H 1.48499 * 109.47142 * 330.00020 * 10 8 6 14 14 C 1.46896 * 111.00176 * 286.76891 * 4 2 1 15 15 C 1.50699 * 109.47041 * 77.97235 * 14 4 2 16 16 N 1.31069 * 126.66310 * 251.38069 * 15 14 4 17 17 N 1.28847 * 107.99362 * 179.97438 * 16 15 14 18 18 N 1.28743 * 109.39260 * 0.02562 * 17 16 15 19 19 N 1.29020 * 108.81167 * 359.97438 * 18 17 16 20 20 C 1.46498 * 126.43579 * 180.26331 * 19 18 17 21 21 C 1.53009 * 109.47135 * 299.68864 * 20 19 18 22 22 C 1.53002 * 109.47020 * 59.68945 * 20 19 18 23 23 H 1.08996 * 109.47138 * 310.12263 * 1 2 3 24 24 H 1.08999 * 109.47180 * 70.12451 * 1 2 3 25 25 H 1.09007 * 109.47048 * 190.12245 * 1 2 3 26 26 H 1.09003 * 109.47343 * 240.00096 * 2 1 3 27 27 H 1.08999 * 109.46939 * 171.78867 * 3 2 1 28 28 H 1.08995 * 109.47259 * 291.78942 * 3 2 1 29 29 H 1.08997 * 109.46996 * 51.78928 * 3 2 1 30 30 H 1.09000 * 109.46691 * 48.29117 * 5 4 2 31 31 H 1.08997 * 109.47175 * 168.29072 * 5 4 2 32 32 H 0.97004 * 119.99718 * 180.02562 * 9 8 6 33 33 H 1.08996 * 109.47043 * 317.97762 * 14 4 2 34 34 H 1.09000 * 109.47147 * 197.97013 * 14 4 2 35 35 H 1.09000 * 109.46895 * 179.68896 * 20 19 18 36 36 H 1.09005 * 109.46867 * 59.99888 * 21 20 19 37 37 H 1.09000 * 109.46763 * 180.02562 * 21 20 19 38 38 H 1.09002 * 109.46831 * 300.00264 * 21 20 19 39 39 H 1.09000 * 109.47247 * 299.99736 * 22 20 19 40 40 H 1.08997 * 109.46989 * 60.00157 * 22 20 19 41 41 H 1.08999 * 109.46798 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.4305 -1.0732 1.0484 6 6 3.5423 -2.2051 0.0598 7 1 2.6654 -2.5495 -0.4683 8 6 4.7641 -2.8011 -0.1706 9 7 4.8616 -3.7892 -1.0330 10 14 6.2807 -2.2058 0.7432 11 1 6.4268 -2.9682 2.0091 12 1 7.4828 -2.4162 -0.1029 13 1 6.1381 -0.7599 1.0499 14 6 1.8221 0.1305 2.4000 15 6 0.3791 0.0561 2.8282 16 7 -0.5153 1.0095 2.7339 17 7 -1.6274 0.5600 3.2044 18 7 -1.4652 -0.6554 3.5969 19 7 -0.2414 -1.0024 3.3815 20 6 0.3585 -2.3057 3.6779 21 6 0.2571 -2.5842 5.1790 22 6 -0.3851 -3.3970 2.9053 23 1 -0.3633 0.6622 0.7858 24 1 -0.3633 0.3494 -0.9664 25 1 -0.3633 -1.0117 0.1806 26 1 1.8934 -0.5138 -0.8900 27 1 3.1200 1.4460 0.1468 28 1 1.8014 1.9122 -0.9542 29 1 1.5617 1.9969 0.8075 30 1 4.0010 -0.2176 0.6871 31 1 3.8258 -1.3926 2.0127 32 1 5.7211 -4.2087 -1.1948 33 1 2.0823 1.1654 2.1779 34 1 2.4590 -0.2400 3.2033 35 1 1.4069 -2.2993 3.3796 36 1 -0.7913 -2.5905 5.4773 37 1 0.7039 -3.5537 5.3996 38 1 0.7868 -1.8067 5.7294 39 1 -1.4334 -3.4033 3.2036 40 1 -0.3127 -3.1985 1.8359 41 1 0.0610 -4.3667 3.1262 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686618210.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:13 Heat of formation + Delta-G solvation = 105.269382 kcal Electronic energy + Delta-G solvation = -21989.102030 eV Core-core repulsion = 18941.548676 eV Total energy + Delta-G solvation = -3047.553355 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.175 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.17980 -39.65878 -37.86238 -34.90581 -33.90768 -33.32524 -32.66334 -29.91461 -28.31934 -28.11103 -27.00964 -25.61140 -23.73011 -23.53263 -21.88242 -20.57375 -18.82885 -18.32324 -17.95527 -16.99235 -16.52715 -16.08984 -15.81377 -15.65152 -14.87038 -14.68323 -14.47328 -14.38674 -14.16125 -13.85267 -13.50625 -13.35222 -13.22050 -12.98381 -12.91807 -12.72315 -12.59675 -12.42878 -12.33387 -12.15983 -12.10591 -12.06434 -11.86345 -11.70111 -11.46420 -11.41717 -10.77550 -10.68214 -9.14312 -8.21205 -6.24309 0.30809 1.11729 1.20258 1.41080 1.44345 1.52979 2.40142 2.83470 3.12648 3.24912 3.38750 3.71101 3.80744 4.03031 4.03723 4.17019 4.26914 4.37584 4.41834 4.44702 4.60351 4.63264 4.67955 4.69639 4.74026 4.74810 4.85195 4.92981 4.98686 5.01788 5.12647 5.18707 5.19227 5.31588 5.40859 5.42407 5.57316 5.97259 6.24724 6.60000 6.82905 7.38610 7.63861 8.95312 Molecular weight = 267.18amu Principal moments of inertia in cm(-1) A = 0.019445 B = 0.007009 C = 0.006002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.599506 B = 3993.988272 C = 4663.744524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.084 3.916 3 C -0.175 4.175 4 N -0.527 5.527 5 C 0.173 3.827 6 C -0.506 4.506 7 H 0.034 0.966 8 C 0.010 3.990 9 N -0.950 5.950 10 Si 0.941 3.059 11 H -0.262 1.262 12 H -0.293 1.293 13 H -0.243 1.243 14 C 0.112 3.888 15 C 0.213 3.787 16 N -0.323 5.323 17 N -0.112 5.112 18 N -0.106 5.106 19 N -0.279 5.279 20 C 0.133 3.867 21 C -0.155 4.155 22 C -0.153 4.153 23 H 0.071 0.929 24 H 0.060 0.940 25 H 0.029 0.971 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.002 0.998 31 H 0.044 0.956 32 H 0.264 0.736 33 H 0.098 0.902 34 H 0.119 0.881 35 H 0.125 0.875 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.043 0.957 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.406 4.923 11.551 13.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.025 4.025 3 C -0.234 4.234 4 N -0.251 5.251 5 C 0.046 3.954 6 C -0.544 4.544 7 H 0.053 0.947 8 C -0.187 4.187 9 N -0.591 5.591 10 Si 0.764 3.236 11 H -0.186 1.186 12 H -0.220 1.220 13 H -0.167 1.167 14 C -0.019 4.019 15 C -0.066 4.066 16 N -0.174 5.174 17 N -0.105 5.105 18 N -0.092 5.092 19 N -0.082 5.082 20 C 0.033 3.967 21 C -0.213 4.213 22 C -0.211 4.211 23 H 0.090 0.910 24 H 0.079 0.921 25 H 0.048 0.952 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.020 0.980 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.137 0.863 35 H 0.143 0.857 36 H 0.088 0.912 37 H 0.129 0.871 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.865 4.904 11.718 13.992 hybrid contribution 1.820 -0.070 -0.577 1.910 sum -4.046 4.834 11.142 12.801 Atomic orbital electron populations 1.22095 0.95334 1.00537 1.02544 1.21541 0.94533 0.93183 0.93195 1.22353 1.01222 0.96763 1.03042 1.61988 1.21311 1.40506 1.01319 1.20034 0.84173 0.94472 0.96700 1.21140 0.94433 1.16198 1.22666 0.94743 1.25774 1.02169 0.94738 0.96001 1.70060 1.26123 1.25824 1.37141 0.85815 0.78311 0.80532 0.78893 1.18637 1.21985 1.16672 1.20864 0.84790 1.00932 0.95295 1.26104 0.99596 0.83842 0.97027 1.74812 0.96882 1.26097 1.19635 1.78504 1.17441 1.01827 1.12705 1.78649 1.00118 1.10379 1.20046 1.48883 1.06594 1.14364 1.38323 1.22218 0.99033 0.76313 0.99155 1.22184 1.04019 1.04711 0.90363 1.22058 1.01086 0.98438 0.99498 0.91035 0.92136 0.95170 0.91836 0.92450 0.91396 0.91117 0.97982 0.93762 0.92684 0.88480 0.86336 0.85699 0.91240 0.87078 0.91507 0.91202 0.93773 0.87630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.01 8.38 71.98 0.60 -4.41 16 2 C 0.08 2.95 2.76 44.91 0.12 3.07 16 3 C -0.18 -5.13 8.10 71.98 0.58 -4.55 16 4 N -0.53 -18.28 4.35 -880.07 -3.83 -22.11 16 5 C 0.17 6.87 3.71 85.56 0.32 7.18 16 6 C -0.51 -26.11 8.99 25.60 0.23 -25.88 16 7 H 0.03 2.05 7.73 -2.91 -0.02 2.03 16 8 C 0.01 0.55 5.47 84.65 0.46 1.01 16 9 N -0.95 -56.11 13.96 21.45 0.30 -55.81 16 10 Si 0.94 39.48 27.37 68.60 1.88 41.36 16 11 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 12 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 13 H -0.24 -9.20 6.69 99.48 0.67 -8.53 16 14 C 0.11 3.12 4.53 85.56 0.39 3.50 16 15 C 0.21 6.37 5.69 138.13 0.79 7.15 16 16 N -0.32 -10.74 10.19 -50.45 -0.51 -11.25 16 17 N -0.11 -3.88 13.43 37.01 0.50 -3.39 16 18 N -0.11 -3.36 13.04 37.02 0.48 -2.88 16 19 N -0.28 -7.92 3.06 -317.81 -0.97 -8.89 16 20 C 0.13 3.04 3.64 45.00 0.16 3.20 16 21 C -0.15 -2.55 9.41 71.99 0.68 -1.87 16 22 C -0.15 -3.57 9.40 71.98 0.68 -2.89 16 23 H 0.07 2.42 4.42 -2.39 -0.01 2.41 16 24 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 26 H 0.06 2.67 6.94 -2.39 -0.02 2.65 16 27 H 0.06 1.69 6.69 -2.39 -0.02 1.67 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.07 1.92 6.41 -2.39 -0.02 1.90 16 30 H 0.00 0.10 6.00 -2.39 -0.01 0.08 16 31 H 0.04 1.62 6.83 -2.39 -0.02 1.60 16 32 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 33 H 0.10 2.52 5.31 -2.39 -0.01 2.50 16 34 H 0.12 2.71 7.46 -2.39 -0.02 2.69 16 35 H 0.13 2.96 7.27 -2.39 -0.02 2.95 16 36 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 37 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -63.89 323.05 3.83 -60.06 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.97 Total: 17.37 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 5.01 Total: -14.47 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -4.03 Total: -104.32 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 1.88 Total: 41.36 kcal Total: -63.89 3.83 -60.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686618210.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.329 kcal (2) G-P(sol) polarization free energy of solvation -63.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds