Wall clock time and date at job start Mon Mar 30 2020 04:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46764 * 124.34896 * 2 1 4 4 C 1.54483 * 105.46909 * 197.03940 * 3 2 1 5 5 H 1.09003 * 110.99651 * 92.72352 * 4 3 2 6 6 C 1.53002 * 110.96961 * 216.46581 * 4 3 2 7 7 N 1.46896 * 109.47329 * 179.30850 * 6 4 3 8 8 C 1.46901 * 110.99957 * 200.42868 * 7 6 4 9 9 C 1.53243 * 109.33512 * 172.74875 * 8 7 6 10 10 N 1.47081 * 108.52177 * 53.83178 * 9 8 7 11 11 C 1.36937 * 120.87798 * 128.83289 * 10 9 8 12 12 H 1.08000 * 119.99870 * 211.79524 * 11 10 9 13 13 C 1.38813 * 120.00006 * 31.80757 * 11 10 9 14 14 N 1.31617 * 120.00251 * 11.45349 * 13 11 10 15 15 Si 1.86803 * 119.99639 * 191.45936 * 13 11 10 16 16 H 1.48494 * 109.47573 * 59.99334 * 15 13 11 17 17 H 1.48503 * 109.46984 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46929 * 299.99202 * 15 13 11 19 19 C 1.47078 * 118.23739 * 308.81350 * 10 9 8 20 20 C 1.46902 * 110.99784 * 76.12983 * 7 6 4 21 21 C 1.54622 * 101.76642 * 334.58784 * 4 3 2 22 22 C 1.34419 * 124.34627 * 180.02562 * 2 1 3 23 23 O 1.21276 * 124.94376 * 359.52538 * 22 2 1 24 24 H 1.08997 * 109.47133 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46343 * 299.94952 * 1 2 3 26 26 H 1.09001 * 109.47030 * 59.94248 * 1 2 3 27 27 H 1.09006 * 110.24325 * 78.04351 * 3 2 1 28 28 H 1.08995 * 110.24756 * 316.03702 * 3 2 1 29 29 H 1.09007 * 109.47396 * 299.31316 * 6 4 3 30 30 H 1.08998 * 109.47103 * 59.30802 * 6 4 3 31 31 H 1.08999 * 109.49060 * 292.70624 * 8 7 6 32 32 H 1.08996 * 109.49014 * 52.78907 * 8 7 6 33 33 H 1.08997 * 109.63140 * 294.12049 * 9 8 7 34 34 H 1.09002 * 109.78317 * 173.63463 * 9 8 7 35 35 H 0.97000 * 119.99793 * 180.02562 * 14 13 11 36 36 H 1.09000 * 109.62783 * 291.47339 * 19 10 9 37 37 H 1.09000 * 109.78695 * 170.99098 * 19 10 9 38 38 H 1.08999 * 109.48993 * 307.21197 * 20 7 6 39 39 H 1.09001 * 109.49340 * 67.29154 * 20 7 6 40 40 H 1.09002 * 110.48915 * 143.48115 * 21 4 3 41 41 H 1.09008 * 110.48586 * 266.11775 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7009 0.7487 -0.4363 5 1 3.8270 0.8451 -1.5147 6 6 4.7882 1.5238 0.3107 7 7 6.1104 1.0469 -0.1161 8 6 7.1382 1.3861 0.8772 9 6 8.4612 0.7187 0.4866 10 7 8.7848 1.0972 -0.8973 11 6 10.0151 1.6062 -1.2173 12 1 10.1107 2.3245 -2.0181 13 6 11.1395 1.1987 -0.5126 14 7 11.0674 0.1680 0.3028 15 14 12.7548 2.1133 -0.7214 16 1 12.5756 3.5322 -0.3218 17 1 13.7933 1.4858 0.1348 18 1 13.1797 2.0493 -2.1429 19 6 7.7520 0.9142 -1.9284 20 6 6.4571 1.5739 -1.4428 21 6 3.6897 -0.7379 -0.0111 22 6 2.2234 -1.1098 -0.0005 23 8 1.7946 -2.2442 0.0072 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5131 0.8905 26 1 -0.3633 0.5147 -0.8895 27 1 2.3310 1.6427 1.0005 28 1 1.8983 1.9384 -0.7099 29 1 4.6956 2.5866 0.0871 30 1 4.6743 1.3670 1.3834 31 1 7.2715 2.4675 0.9079 32 1 6.8269 1.0296 1.8590 33 1 8.3594 -0.3643 0.5556 34 1 9.2551 1.0550 1.1534 35 1 11.8531 -0.1164 0.7955 36 1 7.5820 -0.1500 -2.0915 37 1 8.0737 1.3805 -2.8597 38 1 5.6517 1.3535 -2.1434 39 1 6.5998 2.6527 -1.3797 40 1 4.2324 -1.3458 -0.7351 41 1 4.1198 -0.8533 0.9839 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687185717.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:21 Heat of formation + Delta-G solvation = 0.033287 kcal Electronic energy + Delta-G solvation = -20916.275212 eV Core-core repulsion = 17831.865727 eV Total energy + Delta-G solvation = -3084.409485 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.49192 -38.19845 -36.52310 -34.66315 -32.86126 -31.12182 -29.93977 -28.38841 -27.33766 -26.18964 -24.18649 -22.76513 -22.31152 -20.40545 -19.66734 -19.04235 -16.96414 -16.69719 -16.41971 -15.44893 -15.13058 -14.72444 -14.48593 -14.04245 -13.78670 -13.64756 -13.49899 -13.40231 -12.99552 -12.77684 -12.59562 -12.46502 -12.09805 -11.63725 -11.37730 -11.17661 -11.01648 -10.94453 -10.74500 -10.49649 -10.27041 -10.06092 -9.80597 -9.76397 -9.59293 -8.88600 -8.50751 -7.85447 -6.58604 -5.78119 -3.25676 2.56639 2.88986 3.37617 3.43189 3.43849 4.11130 4.34928 4.48876 4.56670 4.78254 4.93492 5.08269 5.14058 5.27055 5.40371 5.42780 5.43890 5.46867 5.51944 5.64618 5.69292 5.90347 5.94694 6.06569 6.08949 6.15646 6.22382 6.33308 6.37109 6.53137 6.69795 6.94725 6.96884 7.23440 7.57548 7.65119 7.70599 7.81000 8.11765 8.47204 9.22620 9.83880 10.45121 11.30463 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.048246 B = 0.003747 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.216820 B = 7470.978101 C = 7623.536601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.628 5.628 3 C 0.108 3.892 4 C -0.092 4.092 5 H 0.091 0.909 6 C 0.064 3.936 7 N -0.531 5.531 8 C 0.036 3.964 9 C 0.180 3.820 10 N -0.594 5.594 11 C -0.256 4.256 12 H 0.062 0.938 13 C 0.006 3.994 14 N -0.903 5.903 15 Si 0.904 3.096 16 H -0.284 1.284 17 H -0.290 1.290 18 H -0.282 1.282 19 C 0.148 3.852 20 C 0.044 3.956 21 C -0.134 4.134 22 C 0.515 3.485 23 O -0.539 6.539 24 H 0.081 0.919 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.035 0.965 30 H 0.072 0.928 31 H 0.024 0.976 32 H 0.060 0.940 33 H 0.027 0.973 34 H 0.084 0.916 35 H 0.255 0.745 36 H 0.025 0.975 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.027 0.973 40 H 0.106 0.894 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.744 4.508 0.521 18.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.364 5.364 3 C -0.016 4.016 4 C -0.112 4.112 5 H 0.109 0.891 6 C -0.065 4.065 7 N -0.255 5.255 8 C -0.093 4.093 9 C 0.054 3.946 10 N -0.318 5.318 11 C -0.386 4.386 12 H 0.080 0.920 13 C -0.193 4.193 14 N -0.547 5.547 15 Si 0.734 3.266 16 H -0.211 1.211 17 H -0.216 1.216 18 H -0.209 1.209 19 C 0.022 3.978 20 C -0.086 4.086 21 C -0.173 4.173 22 C 0.304 3.696 23 O -0.416 6.416 24 H 0.099 0.901 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.102 0.898 35 H 0.065 0.935 36 H 0.043 0.957 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.045 0.955 40 H 0.124 0.876 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -17.908 3.322 0.591 18.223 hybrid contribution 0.807 1.461 0.006 1.669 sum -17.101 4.783 0.597 17.767 Atomic orbital electron populations 1.21525 0.78532 1.03572 1.01251 1.48212 1.06322 1.07686 1.74146 1.22124 0.90547 0.87042 1.01863 1.22137 0.92647 0.94799 1.01588 0.89098 1.22057 0.89620 0.96018 0.98818 1.61885 1.00832 1.59532 1.03267 1.22917 0.94534 0.98249 0.93571 1.20818 0.90911 0.96200 0.86667 1.44034 1.10924 1.74620 1.02212 1.19108 0.83563 1.17913 1.18028 0.91993 1.25180 0.97615 0.96248 1.00253 1.69971 1.29139 1.25013 1.30568 0.86359 0.83383 0.79242 0.77645 1.21053 1.21584 1.20853 1.20974 0.87539 0.97127 0.92198 1.22666 0.98966 0.96909 0.90034 1.22253 0.92567 0.97051 1.05476 1.21295 0.89952 0.84093 0.74296 1.90698 1.78986 1.21285 1.50667 0.90064 0.92275 0.92252 0.91017 0.90523 0.94634 0.90979 0.95732 0.92141 0.95442 0.89798 0.93518 0.95702 0.92763 0.92092 0.95462 0.87576 0.87503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 11.14 59.85 0.67 1.43 16 2 N -0.63 -6.67 3.33 -180.28 -0.60 -7.27 16 3 C 0.11 0.91 6.91 -3.12 -0.02 0.89 16 4 C -0.09 -0.96 3.19 -88.99 -0.28 -1.24 16 5 H 0.09 0.96 6.85 -51.93 -0.36 0.60 16 6 C 0.06 0.76 4.29 -3.82 -0.02 0.74 16 7 N -0.53 -8.50 4.38 -234.32 -1.03 -9.53 16 8 C 0.04 0.67 5.59 -3.70 -0.02 0.65 16 9 C 0.18 4.24 5.36 -3.60 -0.02 4.22 16 10 N -0.59 -14.82 3.02 -172.02 -0.52 -15.34 16 11 C -0.26 -7.00 9.61 -15.06 -0.14 -7.14 16 12 H 0.06 1.66 7.85 -52.49 -0.41 1.25 16 13 C 0.01 0.17 5.03 -17.43 -0.09 0.08 16 14 N -0.90 -26.06 11.20 55.49 0.62 -25.44 16 15 Si 0.90 21.50 29.57 -169.99 -5.03 16.48 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 C 0.15 3.08 6.69 -3.61 -0.02 3.05 16 20 C 0.04 0.73 5.44 -3.70 -0.02 0.71 16 21 C -0.13 -1.63 6.26 -26.75 -0.17 -1.80 16 22 C 0.51 7.03 8.02 -10.86 -0.09 6.94 16 23 O -0.54 -9.45 17.35 5.56 0.10 -9.35 16 24 H 0.08 0.77 7.53 -51.93 -0.39 0.38 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.54 7.89 -51.93 -0.41 0.13 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.40 7.99 -51.92 -0.42 -0.01 16 30 H 0.07 0.80 7.70 -51.93 -0.40 0.41 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.99 7.89 -51.93 -0.41 0.58 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 2.19 6.34 -51.93 -0.33 1.87 16 35 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 1.09 7.96 -51.93 -0.41 0.68 16 38 H 0.06 0.86 6.72 -51.93 -0.35 0.51 16 39 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.11 1.32 7.85 -51.92 -0.41 0.91 16 LS Contribution 323.72 15.07 4.88 4.88 Total: -1.00 -31.91 323.72 -8.61 -40.52 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -6.81 Total: -3.49 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -0.23 Total: 8.53 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -1.53 Total: -57.57 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.10 Total: -9.35 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.91 -8.61 -40.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687185717.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.557 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds