Wall clock time and date at job start Mon Mar 30 2020 04:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46764 * 124.34896 * 2 1 4 4 C 1.54483 * 105.46909 * 197.03940 * 3 2 1 5 5 H 1.09003 * 110.99651 * 92.72352 * 4 3 2 6 6 C 1.53002 * 110.96961 * 216.46581 * 4 3 2 7 7 N 1.46896 * 109.47329 * 179.30850 * 6 4 3 8 8 C 1.46901 * 110.99957 * 200.42868 * 7 6 4 9 9 C 1.53243 * 109.33512 * 172.74875 * 8 7 6 10 10 N 1.47081 * 108.52177 * 53.83178 * 9 8 7 11 11 C 1.36937 * 120.87798 * 128.83289 * 10 9 8 12 12 H 1.08000 * 119.99870 * 211.79524 * 11 10 9 13 13 C 1.38813 * 120.00006 * 31.80757 * 11 10 9 14 14 N 1.31617 * 120.00251 * 11.45349 * 13 11 10 15 15 Si 1.86803 * 119.99639 * 191.45936 * 13 11 10 16 16 H 1.48494 * 109.47573 * 59.99334 * 15 13 11 17 17 H 1.48503 * 109.46984 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46929 * 299.99202 * 15 13 11 19 19 C 1.47078 * 118.23739 * 308.81350 * 10 9 8 20 20 C 1.46902 * 110.99784 * 76.12983 * 7 6 4 21 21 C 1.54622 * 101.76642 * 334.58784 * 4 3 2 22 22 C 1.34419 * 124.34627 * 180.02562 * 2 1 3 23 23 O 1.21276 * 124.94376 * 359.52538 * 22 2 1 24 24 H 1.08997 * 109.47133 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46343 * 299.94952 * 1 2 3 26 26 H 1.09001 * 109.47030 * 59.94248 * 1 2 3 27 27 H 1.09006 * 110.24325 * 78.04351 * 3 2 1 28 28 H 1.08995 * 110.24756 * 316.03702 * 3 2 1 29 29 H 1.09007 * 109.47396 * 299.31316 * 6 4 3 30 30 H 1.08998 * 109.47103 * 59.30802 * 6 4 3 31 31 H 1.08999 * 109.49060 * 292.70624 * 8 7 6 32 32 H 1.08996 * 109.49014 * 52.78907 * 8 7 6 33 33 H 1.08997 * 109.63140 * 294.12049 * 9 8 7 34 34 H 1.09002 * 109.78317 * 173.63463 * 9 8 7 35 35 H 0.97000 * 119.99793 * 180.02562 * 14 13 11 36 36 H 1.09000 * 109.62783 * 291.47339 * 19 10 9 37 37 H 1.09000 * 109.78695 * 170.99098 * 19 10 9 38 38 H 1.08999 * 109.48993 * 307.21197 * 20 7 6 39 39 H 1.09001 * 109.49340 * 67.29154 * 20 7 6 40 40 H 1.09002 * 110.48915 * 143.48115 * 21 4 3 41 41 H 1.09008 * 110.48586 * 266.11775 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7009 0.7487 -0.4363 5 1 3.8270 0.8451 -1.5147 6 6 4.7882 1.5238 0.3107 7 7 6.1104 1.0469 -0.1161 8 6 7.1382 1.3861 0.8772 9 6 8.4612 0.7187 0.4866 10 7 8.7848 1.0972 -0.8973 11 6 10.0151 1.6062 -1.2173 12 1 10.1107 2.3245 -2.0181 13 6 11.1395 1.1987 -0.5126 14 7 11.0674 0.1680 0.3028 15 14 12.7548 2.1133 -0.7214 16 1 12.5756 3.5322 -0.3218 17 1 13.7933 1.4858 0.1348 18 1 13.1797 2.0493 -2.1429 19 6 7.7520 0.9142 -1.9284 20 6 6.4571 1.5739 -1.4428 21 6 3.6897 -0.7379 -0.0111 22 6 2.2234 -1.1098 -0.0005 23 8 1.7946 -2.2442 0.0072 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5131 0.8905 26 1 -0.3633 0.5147 -0.8895 27 1 2.3310 1.6427 1.0005 28 1 1.8983 1.9384 -0.7099 29 1 4.6956 2.5866 0.0871 30 1 4.6743 1.3670 1.3834 31 1 7.2715 2.4675 0.9079 32 1 6.8269 1.0296 1.8590 33 1 8.3594 -0.3643 0.5556 34 1 9.2551 1.0550 1.1534 35 1 11.8531 -0.1164 0.7955 36 1 7.5820 -0.1500 -2.0915 37 1 8.0737 1.3805 -2.8597 38 1 5.6517 1.3535 -2.1434 39 1 6.5998 2.6527 -1.3797 40 1 4.2324 -1.3458 -0.7351 41 1 4.1198 -0.8533 0.9839 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687185717.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:20 Heat of formation + Delta-G solvation = -22.127195 kcal Electronic energy + Delta-G solvation = -20917.236163 eV Core-core repulsion = 17831.865727 eV Total energy + Delta-G solvation = -3085.370436 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.169 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.43523 -39.61070 -37.67739 -36.16683 -34.11180 -32.82898 -31.55343 -29.57587 -28.33500 -27.43687 -25.57357 -24.29501 -23.84812 -21.40718 -20.82464 -20.44939 -18.66558 -17.80576 -17.34423 -16.89299 -16.36689 -16.14538 -15.81865 -15.30623 -15.20856 -15.02880 -14.94841 -14.61050 -14.31215 -14.18661 -13.39536 -13.24151 -13.22871 -13.09250 -12.90349 -12.60642 -12.50275 -12.34753 -12.20599 -12.01797 -11.90856 -11.80649 -11.42967 -11.25693 -10.84410 -10.56834 -9.69697 -9.15314 -8.57360 -7.85484 -5.36806 1.47658 1.49332 1.54115 1.56412 2.10433 2.51536 2.98940 3.30732 3.45566 3.69877 3.74045 3.84477 4.10814 4.37931 4.39936 4.42926 4.49948 4.56235 4.58909 4.66942 4.69668 4.76752 4.77967 4.84432 4.87250 4.88214 4.96044 5.09580 5.12110 5.23964 5.32375 5.41240 5.59646 5.63470 5.74479 6.08088 6.26306 6.37829 6.42610 7.14264 7.17112 7.86557 8.42457 9.20366 Molecular weight = 267.17amu Principal moments of inertia in cm(-1) A = 0.048246 B = 0.003747 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.216820 B = 7470.978101 C = 7623.536601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.623 5.623 3 C 0.112 3.888 4 C -0.082 4.082 5 H 0.094 0.906 6 C 0.068 3.932 7 N -0.542 5.542 8 C 0.054 3.946 9 C 0.187 3.813 10 N -0.614 5.614 11 C -0.268 4.268 12 H 0.065 0.935 13 C -0.048 4.048 14 N -0.936 5.936 15 Si 0.970 3.030 16 H -0.276 1.276 17 H -0.294 1.294 18 H -0.276 1.276 19 C 0.142 3.858 20 C 0.057 3.943 21 C -0.132 4.132 22 C 0.506 3.494 23 O -0.590 6.590 24 H 0.061 0.939 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.022 0.978 32 H 0.082 0.918 33 H -0.005 1.005 34 H 0.050 0.950 35 H 0.250 0.750 36 H 0.011 0.989 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.027 0.973 40 H 0.089 0.911 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.612 6.981 0.228 20.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.356 5.356 3 C -0.011 4.011 4 C -0.101 4.101 5 H 0.113 0.887 6 C -0.060 4.060 7 N -0.266 5.266 8 C -0.075 4.075 9 C 0.061 3.939 10 N -0.339 5.339 11 C -0.398 4.398 12 H 0.082 0.918 13 C -0.244 4.244 14 N -0.581 5.581 15 Si 0.797 3.203 16 H -0.202 1.202 17 H -0.220 1.220 18 H -0.202 1.202 19 C 0.016 3.984 20 C -0.072 4.072 21 C -0.173 4.173 22 C 0.295 3.705 23 O -0.472 6.472 24 H 0.080 0.920 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.109 0.891 28 H 0.124 0.876 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.041 0.959 32 H 0.100 0.900 33 H 0.013 0.987 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.029 0.971 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.045 0.955 40 H 0.107 0.893 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -19.824 5.855 0.281 20.673 hybrid contribution 1.328 0.678 0.060 1.492 sum -18.496 6.532 0.341 19.618 Atomic orbital electron populations 1.21725 0.77038 1.03106 1.03501 1.48367 1.07439 1.07514 1.72290 1.22279 0.88664 0.86320 1.03814 1.22054 0.93603 0.92903 1.01585 0.88736 1.22107 0.87062 0.97099 0.99717 1.61782 1.02096 1.60285 1.02469 1.22546 0.92615 0.97297 0.95060 1.20579 0.92902 0.94586 0.85870 1.44333 1.11252 1.74694 1.03586 1.19468 0.84827 1.17768 1.17768 0.91772 1.25951 1.00882 0.97164 1.00369 1.70150 1.29627 1.26663 1.31684 0.85317 0.79205 0.78159 0.77570 1.20170 1.22045 1.20168 1.21140 0.88720 0.96822 0.91696 1.22465 0.97533 0.96140 0.91033 1.22201 0.91676 0.98459 1.04917 1.21519 0.90790 0.84089 0.74065 1.90665 1.79811 1.23371 1.53341 0.91968 0.89990 0.89943 0.89088 0.87628 0.92684 0.89795 0.95944 0.90011 0.98665 0.93190 0.94096 0.97123 0.92543 0.88698 0.95525 0.89259 0.87796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.19 11.14 127.77 1.42 2.61 16 2 N -0.62 -11.42 3.33 -842.88 -2.81 -14.23 16 3 C 0.11 1.36 6.91 86.83 0.60 1.96 16 4 C -0.08 -1.40 3.19 -9.74 -0.03 -1.43 16 5 H 0.09 1.60 6.85 -2.39 -0.02 1.58 16 6 C 0.07 1.34 4.29 86.30 0.37 1.71 16 7 N -0.54 -16.13 4.38 -895.25 -3.93 -20.05 16 8 C 0.05 1.92 5.59 86.38 0.48 2.41 16 9 C 0.19 9.02 5.36 86.35 0.46 9.48 16 10 N -0.61 -31.10 3.02 -698.14 -2.11 -33.20 16 11 C -0.27 -14.82 9.61 84.03 0.81 -14.01 16 12 H 0.06 3.44 7.85 -2.91 -0.02 3.42 16 13 C -0.05 -2.69 5.03 84.86 0.43 -2.26 16 14 N -0.94 -55.82 11.20 21.65 0.24 -55.57 16 15 Si 0.97 44.75 29.57 68.60 2.03 46.78 16 16 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 17 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 18 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 19 C 0.14 5.84 6.69 86.35 0.58 6.42 16 20 C 0.06 1.77 5.44 86.38 0.47 2.24 16 21 C -0.13 -3.07 6.26 30.58 0.19 -2.88 16 22 C 0.51 13.35 8.02 87.90 0.71 14.06 16 23 O -0.59 -21.06 17.35 -3.02 -0.05 -21.11 16 24 H 0.06 1.11 7.53 -2.39 -0.02 1.09 16 25 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 26 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.09 0.86 7.89 -2.38 -0.02 0.84 16 28 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.05 0.95 7.99 -2.38 -0.02 0.93 16 30 H 0.08 1.51 7.70 -2.39 -0.02 1.49 16 31 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 2.54 7.89 -2.39 -0.02 2.53 16 33 H 0.00 -0.26 8.14 -2.39 -0.02 -0.27 16 34 H 0.05 2.72 6.34 -2.39 -0.02 2.70 16 35 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 36 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.06 2.24 7.96 -2.39 -0.02 2.23 16 38 H 0.09 2.31 6.72 -2.39 -0.02 2.30 16 39 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.10 2.45 7.85 -2.38 -0.02 2.43 16 Total: -1.00 -72.43 323.72 0.86 -71.57 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: 0.99 Total: 5.52 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: 6.49 Total: 20.30 kcal Atomic # 7 Polarization: -114.46 SS G_CDS: -8.60 Total: -123.06 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.05 Total: -21.11 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -72.43 0.86 -71.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687185717.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.443 kcal (2) G-P(sol) polarization free energy of solvation -72.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds