Wall clock time and date at job start Mon Mar 30 2020 05:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99614 * 2 1 4 4 H 1.48504 * 109.46947 * 274.38614 * 3 2 1 5 5 H 1.48508 * 109.46899 * 34.38379 * 3 2 1 6 6 H 1.48495 * 109.47303 * 154.38241 * 3 2 1 7 7 C 1.38812 * 120.00606 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99853 * 197.19579 * 7 2 1 9 9 N 1.36931 * 119.99721 * 17.47328 * 7 2 1 10 10 C 1.47082 * 120.88176 * 26.28449 * 9 7 2 11 11 C 1.53694 * 108.27876 * 128.75695 * 10 9 7 12 12 N 1.46904 * 109.25661 * 54.07960 * 11 10 9 13 13 C 1.46898 * 110.99940 * 172.61011 * 12 11 10 14 14 C 1.52994 * 109.47296 * 314.30614 * 13 12 11 15 15 N 1.46905 * 109.47191 * 180.02562 * 14 13 12 16 16 C 1.46843 * 110.99620 * 294.20297 * 15 14 13 17 17 C 1.53043 * 109.52272 * 174.16162 * 16 15 14 18 18 C 1.53115 * 109.27599 * 59.18106 * 17 16 15 19 19 C 1.53117 * 109.16389 * 302.34518 * 18 17 16 20 20 C 1.46851 * 111.00007 * 169.99912 * 15 14 13 21 21 C 1.46903 * 111.26992 * 296.76086 * 12 11 10 22 22 C 1.47080 * 120.88364 * 206.56279 * 9 7 2 23 23 H 0.96993 * 120.00972 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.63087 * 248.51914 * 10 9 7 25 25 H 1.08996 * 109.63194 * 9.10611 * 10 9 7 26 26 H 1.09005 * 109.64569 * 294.08201 * 11 10 9 27 27 H 1.08993 * 109.45072 * 173.95996 * 11 10 9 28 28 H 1.09004 * 109.47199 * 74.30771 * 13 12 11 29 29 H 1.09004 * 109.47300 * 194.30103 * 13 12 11 30 30 H 1.09005 * 109.47105 * 299.99648 * 14 13 12 31 31 H 1.08995 * 109.47522 * 59.99754 * 14 13 12 32 32 H 1.09000 * 109.46686 * 294.17771 * 16 15 14 33 33 H 1.09005 * 109.46475 * 54.15134 * 16 15 14 34 34 H 1.09000 * 109.50312 * 299.24108 * 17 16 15 35 35 H 1.09000 * 109.50590 * 179.12450 * 17 16 15 36 36 H 1.09001 * 109.51916 * 182.44227 * 18 17 16 37 37 H 1.08999 * 109.52115 * 62.25188 * 18 17 16 38 38 H 1.09000 * 109.50730 * 297.71625 * 19 18 17 39 39 H 1.08997 * 109.50509 * 177.59756 * 19 18 17 40 40 H 1.09004 * 109.45704 * 305.84918 * 20 15 14 41 41 H 1.08998 * 109.46185 * 65.81961 * 20 15 14 42 42 H 1.09001 * 109.49186 * 303.14219 * 21 12 11 43 43 H 1.08999 * 109.49207 * 183.06673 * 21 12 11 44 44 H 1.09004 * 109.62440 * 350.90141 * 22 9 7 45 45 H 1.09004 * 109.62907 * 111.27775 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4048 2.1001 -1.3960 5 1 1.4968 2.6242 0.7907 6 1 3.5909 1.4155 0.6053 7 6 2.0104 -1.2021 -0.0005 8 1 3.0541 -1.2230 0.2760 9 7 1.3732 -2.3604 -0.3571 10 6 0.2096 -2.3359 -1.2565 11 6 0.4569 -3.3417 -2.3921 12 7 0.7680 -4.6565 -1.8155 13 6 0.8391 -5.6862 -2.8608 14 6 -0.3545 -5.5365 -3.8062 15 7 -0.2837 -6.5666 -4.8512 16 6 0.8832 -6.3578 -5.7177 17 6 1.0070 -7.5256 -6.6991 18 6 -0.2683 -7.6149 -7.5418 19 6 -1.4738 -7.7836 -6.6128 20 6 -1.5255 -6.6084 -5.6339 21 6 2.0102 -4.6146 -1.0325 22 6 1.8303 -3.6617 0.1539 23 1 -0.4851 0.8399 0.0004 24 1 -0.6867 -2.6167 -0.7035 25 1 0.0888 -1.3354 -1.6717 26 1 1.2942 -3.0054 -3.0036 27 1 -0.4375 -3.4181 -3.0103 28 1 1.7652 -5.5694 -3.4236 29 1 0.8161 -6.6739 -2.4001 30 1 -1.2807 -5.6534 -3.2434 31 1 -0.3315 -4.5490 -4.2669 32 1 0.7615 -5.4279 -6.2732 33 1 1.7839 -6.3003 -5.1064 34 1 1.1426 -8.4541 -6.1447 35 1 1.8642 -7.3626 -7.3524 36 1 -0.2025 -8.4718 -8.2123 37 1 -0.3836 -6.7020 -8.1260 38 1 -1.3772 -8.7162 -6.0569 39 1 -2.3890 -7.8051 -7.2044 40 1 -2.3745 -6.7329 -4.9616 41 1 -1.6360 -5.6773 -6.1897 42 1 2.8259 -4.2606 -1.6630 43 1 2.2420 -5.6141 -0.6644 44 1 2.7815 -3.5379 0.6717 45 1 1.0884 -4.0657 0.8427 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687820492.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:27 Heat of formation + Delta-G solvation = 30.561026 kcal Electronic energy + Delta-G solvation = -21265.427798 eV Core-core repulsion = 18318.175189 eV Total energy + Delta-G solvation = -2947.252608 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.30838 -37.92406 -34.91712 -33.35399 -31.32596 -30.96895 -29.88428 -28.45972 -25.95786 -24.05135 -23.18979 -22.94351 -22.34122 -20.50326 -19.82457 -18.99878 -16.84013 -16.29750 -15.26452 -15.07541 -14.68888 -14.62315 -14.35578 -14.22163 -13.69010 -13.55864 -13.42427 -13.27119 -13.15875 -12.67846 -12.33074 -12.09974 -11.52775 -11.39608 -11.35499 -11.10206 -11.00142 -10.83960 -10.72272 -10.53371 -10.40923 -10.32004 -10.25385 -10.00893 -9.70584 -9.55610 -8.48342 -8.32811 -7.73336 -6.64156 -5.75901 -3.16779 3.38605 3.45581 3.47159 3.72978 4.50352 4.56338 4.65993 4.69644 4.77063 5.02345 5.19343 5.23349 5.33162 5.35352 5.41566 5.45875 5.48523 5.55507 5.66036 5.72836 5.75094 5.82273 5.91087 5.93251 5.97996 6.00970 6.08583 6.14855 6.18793 6.23831 6.28105 6.39388 6.56979 6.72355 6.96905 7.04763 7.05455 7.29069 7.66515 7.69202 7.74909 7.85418 8.45786 9.23578 9.87239 10.46123 11.32776 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.033476 B = 0.003739 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.229967 B = 7486.099275 C = 7693.293701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.000 4.000 3 Si 0.902 3.098 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.179 3.821 11 C 0.029 3.971 12 N -0.532 5.532 13 C 0.061 3.939 14 C 0.053 3.947 15 N -0.538 5.538 16 C 0.051 3.949 17 C -0.116 4.116 18 C -0.122 4.122 19 C -0.116 4.116 20 C 0.056 3.944 21 C 0.047 3.953 22 C 0.149 3.851 23 H 0.253 0.747 24 H 0.026 0.974 25 H 0.087 0.913 26 H 0.022 0.978 27 H 0.064 0.936 28 H 0.024 0.976 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.039 0.961 32 H 0.030 0.970 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.031 0.969 42 H 0.026 0.974 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.883 -14.624 -13.061 19.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.320 5.320 10 C 0.052 3.948 11 C -0.100 4.100 12 N -0.258 5.258 13 C -0.068 4.068 14 C -0.074 4.074 15 N -0.263 5.263 16 C -0.077 4.077 17 C -0.154 4.154 18 C -0.159 4.159 19 C -0.154 4.154 20 C -0.072 4.072 21 C -0.083 4.083 22 C 0.022 3.978 23 H 0.063 0.937 24 H 0.044 0.956 25 H 0.105 0.895 26 H 0.040 0.960 27 H 0.082 0.918 28 H 0.043 0.957 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.049 0.951 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -1.305 -15.035 -12.483 19.585 hybrid contribution 0.974 1.900 -0.990 2.354 sum -0.330 -13.134 -13.473 18.818 Atomic orbital electron populations 1.70033 1.05188 1.25397 1.54195 1.25016 0.95304 0.98324 1.01147 0.86275 0.79165 0.83825 0.77533 1.21588 1.21751 1.20422 1.19224 0.92700 0.84921 1.41209 0.91632 1.44154 1.34461 1.01204 1.52139 1.20957 0.88949 0.96584 0.88264 1.23083 0.98608 0.89599 0.98715 1.62004 1.34748 1.05857 1.23151 1.22068 0.95695 0.96730 0.92267 1.22262 1.00156 0.92384 0.92600 1.61846 1.02641 1.48328 1.13497 1.22152 0.94263 0.96726 0.94572 1.21581 0.97348 0.99217 0.97243 1.21582 0.95180 1.01479 0.97694 1.21579 0.97820 0.99025 0.96949 1.22067 0.92349 0.97281 0.95518 1.22589 0.89501 0.99355 0.96814 1.20974 0.97754 0.86475 0.92599 0.93664 0.95552 0.89491 0.95995 0.91813 0.95748 0.90638 0.89889 0.94259 0.95142 0.90496 0.91116 0.91792 0.91996 0.92423 0.91100 0.91737 0.90660 0.95090 0.95579 0.92022 0.92682 0.95630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 11.16 55.49 0.62 -25.95 16 2 C 0.00 0.01 4.93 -17.43 -0.09 -0.07 16 3 Si 0.90 21.94 29.59 -169.99 -5.03 16.91 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.25 -7.04 9.63 -15.06 -0.15 -7.19 16 8 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 9 N -0.60 -15.50 3.03 -171.74 -0.52 -16.02 16 10 C 0.18 4.41 5.45 -3.36 -0.02 4.40 16 11 C 0.03 0.58 5.06 -3.46 -0.02 0.57 16 12 N -0.53 -9.82 4.78 -234.03 -1.12 -10.94 16 13 C 0.06 0.92 5.20 -3.83 -0.02 0.90 16 14 C 0.05 0.74 4.21 -3.82 -0.02 0.72 16 15 N -0.54 -6.51 4.66 -234.66 -1.09 -7.60 16 16 C 0.05 0.57 5.29 -3.83 -0.02 0.55 16 17 C -0.12 -1.07 6.09 -26.65 -0.16 -1.23 16 18 C -0.12 -1.02 6.00 -26.61 -0.16 -1.18 16 19 C -0.12 -1.01 6.09 -26.65 -0.16 -1.18 16 20 C 0.06 0.59 5.46 -3.83 -0.02 0.57 16 21 C 0.05 0.88 5.58 -3.70 -0.02 0.86 16 22 C 0.15 3.26 6.69 -3.61 -0.02 3.24 16 23 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 24 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.09 2.37 6.11 -51.93 -0.32 2.05 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 1.16 5.73 -51.93 -0.30 0.87 16 28 H 0.02 0.37 6.37 -51.93 -0.33 0.04 16 29 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.08 1.18 7.99 -51.93 -0.41 0.77 16 31 H 0.04 0.58 6.16 -51.93 -0.32 0.26 16 32 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.91 6.21 -51.93 -0.32 0.58 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.77 8.02 -51.93 -0.42 0.35 16 41 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 1.00 8.11 -51.93 -0.42 0.58 16 44 H 0.05 1.15 7.95 -51.93 -0.41 0.74 16 45 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 334.90 15.07 5.05 5.05 Total: -1.00 -29.62 334.90 -11.27 -40.88 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -8.30 Total: -3.27 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -0.87 Total: 0.94 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: -2.11 Total: -60.51 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.62 -11.27 -40.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687820492.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.445 kcal (2) G-P(sol) polarization free energy of solvation -29.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds