Wall clock time and date at job start Mon Mar 30 2020 05:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99614 * 2 1 4 4 H 1.48504 * 109.46947 * 274.38614 * 3 2 1 5 5 H 1.48508 * 109.46899 * 34.38379 * 3 2 1 6 6 H 1.48495 * 109.47303 * 154.38241 * 3 2 1 7 7 C 1.38812 * 120.00606 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99853 * 197.19579 * 7 2 1 9 9 N 1.36931 * 119.99721 * 17.47328 * 7 2 1 10 10 C 1.47082 * 120.88176 * 26.28449 * 9 7 2 11 11 C 1.53694 * 108.27876 * 128.75695 * 10 9 7 12 12 N 1.46904 * 109.25661 * 54.07960 * 11 10 9 13 13 C 1.46898 * 110.99940 * 172.61011 * 12 11 10 14 14 C 1.52994 * 109.47296 * 314.30614 * 13 12 11 15 15 N 1.46905 * 109.47191 * 180.02562 * 14 13 12 16 16 C 1.46843 * 110.99620 * 294.20297 * 15 14 13 17 17 C 1.53043 * 109.52272 * 174.16162 * 16 15 14 18 18 C 1.53115 * 109.27599 * 59.18106 * 17 16 15 19 19 C 1.53117 * 109.16389 * 302.34518 * 18 17 16 20 20 C 1.46851 * 111.00007 * 169.99912 * 15 14 13 21 21 C 1.46903 * 111.26992 * 296.76086 * 12 11 10 22 22 C 1.47080 * 120.88364 * 206.56279 * 9 7 2 23 23 H 0.96993 * 120.00972 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.63087 * 248.51914 * 10 9 7 25 25 H 1.08996 * 109.63194 * 9.10611 * 10 9 7 26 26 H 1.09005 * 109.64569 * 294.08201 * 11 10 9 27 27 H 1.08993 * 109.45072 * 173.95996 * 11 10 9 28 28 H 1.09004 * 109.47199 * 74.30771 * 13 12 11 29 29 H 1.09004 * 109.47300 * 194.30103 * 13 12 11 30 30 H 1.09005 * 109.47105 * 299.99648 * 14 13 12 31 31 H 1.08995 * 109.47522 * 59.99754 * 14 13 12 32 32 H 1.09000 * 109.46686 * 294.17771 * 16 15 14 33 33 H 1.09005 * 109.46475 * 54.15134 * 16 15 14 34 34 H 1.09000 * 109.50312 * 299.24108 * 17 16 15 35 35 H 1.09000 * 109.50590 * 179.12450 * 17 16 15 36 36 H 1.09001 * 109.51916 * 182.44227 * 18 17 16 37 37 H 1.08999 * 109.52115 * 62.25188 * 18 17 16 38 38 H 1.09000 * 109.50730 * 297.71625 * 19 18 17 39 39 H 1.08997 * 109.50509 * 177.59756 * 19 18 17 40 40 H 1.09004 * 109.45704 * 305.84918 * 20 15 14 41 41 H 1.08998 * 109.46185 * 65.81961 * 20 15 14 42 42 H 1.09001 * 109.49186 * 303.14219 * 21 12 11 43 43 H 1.08999 * 109.49207 * 183.06673 * 21 12 11 44 44 H 1.09004 * 109.62440 * 350.90141 * 22 9 7 45 45 H 1.09004 * 109.62907 * 111.27775 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4048 2.1001 -1.3960 5 1 1.4968 2.6242 0.7907 6 1 3.5909 1.4155 0.6053 7 6 2.0104 -1.2021 -0.0005 8 1 3.0541 -1.2230 0.2760 9 7 1.3732 -2.3604 -0.3571 10 6 0.2096 -2.3359 -1.2565 11 6 0.4569 -3.3417 -2.3921 12 7 0.7680 -4.6565 -1.8155 13 6 0.8391 -5.6862 -2.8608 14 6 -0.3545 -5.5365 -3.8062 15 7 -0.2837 -6.5666 -4.8512 16 6 0.8832 -6.3578 -5.7177 17 6 1.0070 -7.5256 -6.6991 18 6 -0.2683 -7.6149 -7.5418 19 6 -1.4738 -7.7836 -6.6128 20 6 -1.5255 -6.6084 -5.6339 21 6 2.0102 -4.6146 -1.0325 22 6 1.8303 -3.6617 0.1539 23 1 -0.4851 0.8399 0.0004 24 1 -0.6867 -2.6167 -0.7035 25 1 0.0888 -1.3354 -1.6717 26 1 1.2942 -3.0054 -3.0036 27 1 -0.4375 -3.4181 -3.0103 28 1 1.7652 -5.5694 -3.4236 29 1 0.8161 -6.6739 -2.4001 30 1 -1.2807 -5.6534 -3.2434 31 1 -0.3315 -4.5490 -4.2669 32 1 0.7615 -5.4279 -6.2732 33 1 1.7839 -6.3003 -5.1064 34 1 1.1426 -8.4541 -6.1447 35 1 1.8642 -7.3626 -7.3524 36 1 -0.2025 -8.4718 -8.2123 37 1 -0.3836 -6.7020 -8.1260 38 1 -1.3772 -8.7162 -6.0569 39 1 -2.3890 -7.8051 -7.2044 40 1 -2.3745 -6.7329 -4.9616 41 1 -1.6360 -5.6773 -6.1897 42 1 2.8259 -4.2606 -1.6630 43 1 2.2420 -5.6141 -0.6644 44 1 2.7815 -3.5379 0.6717 45 1 1.0884 -4.0657 0.8427 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687820492.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:27 Heat of formation + Delta-G solvation = 11.243742 kcal Electronic energy + Delta-G solvation = -21266.265458 eV Core-core repulsion = 18318.175189 eV Total energy + Delta-G solvation = -2948.090269 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.37957 -39.34757 -36.52269 -34.60304 -33.11493 -31.79622 -31.65506 -29.89265 -27.56876 -25.46540 -24.44529 -24.19471 -23.79226 -21.80220 -20.79067 -20.56246 -18.74137 -17.53414 -16.76770 -16.34542 -16.10953 -15.74250 -15.66269 -15.37320 -15.30942 -15.04023 -14.82780 -14.65986 -14.32931 -13.94299 -13.63418 -13.12150 -13.07590 -12.97100 -12.80051 -12.63235 -12.27682 -12.14609 -12.11958 -12.06382 -11.87408 -11.64984 -11.52480 -11.36290 -11.26435 -11.16661 -10.60321 -9.34631 -9.22140 -8.70413 -7.89096 -5.33994 1.45451 1.46393 1.56261 2.49225 2.67114 3.22628 3.28467 3.66286 3.85088 3.89290 3.95828 4.09838 4.14643 4.26949 4.33309 4.33775 4.46177 4.48388 4.55774 4.59760 4.62531 4.66328 4.68057 4.81167 4.85670 4.91948 4.95808 4.97997 5.04762 5.08869 5.11348 5.18464 5.23384 5.29207 5.34797 5.48583 5.59508 5.65004 6.03805 6.12135 6.19736 6.28000 6.35837 7.11290 7.81906 8.36652 9.17737 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.033476 B = 0.003739 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.229967 B = 7486.099275 C = 7693.293701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.052 4.052 3 Si 0.969 3.031 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.267 1.267 7 C -0.266 4.266 8 H 0.068 0.932 9 N -0.616 5.616 10 C 0.186 3.814 11 C 0.049 3.951 12 N -0.541 5.541 13 C 0.069 3.931 14 C 0.061 3.939 15 N -0.539 5.539 16 C 0.049 3.951 17 C -0.112 4.112 18 C -0.121 4.121 19 C -0.112 4.112 20 C 0.052 3.948 21 C 0.057 3.943 22 C 0.144 3.856 23 H 0.251 0.749 24 H -0.001 1.001 25 H 0.056 0.944 26 H 0.013 0.987 27 H 0.082 0.918 28 H 0.029 0.971 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.027 0.973 32 H 0.022 0.978 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.026 0.974 42 H 0.022 0.978 43 H 0.095 0.905 44 H 0.061 0.939 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.077 -16.091 -14.318 21.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.797 3.203 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.192 1.192 7 C -0.396 4.396 8 H 0.086 0.914 9 N -0.340 5.340 10 C 0.060 3.940 11 C -0.080 4.080 12 N -0.267 5.267 13 C -0.059 4.059 14 C -0.067 4.067 15 N -0.265 5.265 16 C -0.079 4.079 17 C -0.150 4.150 18 C -0.158 4.158 19 C -0.150 4.150 20 C -0.076 4.076 21 C -0.072 4.072 22 C 0.018 3.982 23 H 0.060 0.940 24 H 0.017 0.983 25 H 0.074 0.926 26 H 0.032 0.968 27 H 0.100 0.900 28 H 0.047 0.953 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.044 0.956 42 H 0.040 0.960 43 H 0.113 0.887 44 H 0.080 0.920 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -0.483 -16.541 -13.749 21.515 hybrid contribution 0.706 2.294 -0.569 2.467 sum 0.224 -14.247 -14.319 20.200 Atomic orbital electron populations 1.70191 1.06672 1.25891 1.55403 1.25808 0.96100 1.01532 1.01251 0.85220 0.78221 0.79440 0.77375 1.21307 1.21996 1.19192 1.19564 0.93038 0.86100 1.40881 0.91432 1.44448 1.34547 1.02179 1.52810 1.20716 0.87887 0.96290 0.89107 1.22733 0.99141 0.89514 0.96658 1.61947 1.34867 1.05429 1.24413 1.22045 0.96458 0.95750 0.91615 1.22107 0.99318 0.92417 0.92892 1.61885 1.03642 1.47210 1.13717 1.22207 0.93589 0.97415 0.94720 1.21570 0.98365 0.98091 0.96988 1.21593 0.94470 1.02123 0.97663 1.21569 0.98817 0.97900 0.96667 1.22168 0.91644 0.97994 0.95783 1.22449 0.89344 1.00013 0.95391 1.21130 0.97544 0.85472 0.94017 0.94029 0.98258 0.92593 0.96836 0.90001 0.95300 0.89552 0.90339 0.95459 0.95942 0.91111 0.91176 0.90606 0.90398 0.92583 0.91217 0.90204 0.90542 0.95576 0.95981 0.88722 0.92030 0.96499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.54 11.16 21.65 0.24 -56.30 16 2 C -0.05 -2.95 4.93 84.86 0.42 -2.53 16 3 Si 0.97 45.57 29.59 68.60 2.03 47.60 16 4 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 7 C -0.27 -15.09 9.63 84.03 0.81 -14.28 16 8 H 0.07 3.72 7.88 -2.91 -0.02 3.70 16 9 N -0.62 -32.49 3.03 -697.26 -2.11 -34.60 16 10 C 0.19 9.47 5.45 86.50 0.47 9.94 16 11 C 0.05 1.96 5.06 86.54 0.44 2.40 16 12 N -0.54 -19.31 4.78 -894.33 -4.27 -23.58 16 13 C 0.07 1.96 5.20 86.30 0.45 2.40 16 14 C 0.06 1.60 4.21 86.30 0.36 1.96 16 15 N -0.54 -12.18 4.66 -896.34 -4.17 -16.36 16 16 C 0.05 1.01 5.29 86.33 0.46 1.47 16 17 C -0.11 -1.82 6.09 30.65 0.19 -1.63 16 18 C -0.12 -1.73 6.00 30.67 0.18 -1.55 16 19 C -0.11 -1.70 6.09 30.65 0.19 -1.51 16 20 C 0.05 1.01 5.46 86.32 0.47 1.48 16 21 C 0.06 2.04 5.58 86.38 0.48 2.52 16 22 C 0.14 6.27 6.69 86.35 0.58 6.85 16 23 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 24 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 25 H 0.06 3.17 6.11 -2.39 -0.01 3.16 16 26 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.08 2.97 5.73 -2.39 -0.01 2.96 16 28 H 0.03 0.82 6.37 -2.39 -0.02 0.80 16 29 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.08 2.14 7.99 -2.38 -0.02 2.12 16 31 H 0.03 0.78 6.16 -2.39 -0.01 0.77 16 32 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 1.55 6.21 -2.38 -0.01 1.54 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.08 1.46 8.02 -2.39 -0.02 1.44 16 41 H 0.03 0.53 8.14 -2.39 -0.02 0.52 16 42 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.09 2.78 8.11 -2.39 -0.02 2.76 16 44 H 0.06 2.55 7.95 -2.38 -0.02 2.53 16 45 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 Total: -1.00 -63.89 334.90 -1.87 -65.76 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.93 Total: 9.93 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 5.49 Total: 7.55 kcal Atomic # 7 Polarization: -120.52 SS G_CDS: -10.32 Total: -130.84 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -63.89 -1.87 -65.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687820492.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.002 kcal (2) G-P(sol) polarization free energy of solvation -63.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds