Wall clock time and date at job start Mon Mar 30 2020 05:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.65014 * 2 1 4 4 C 1.54600 * 110.72662 * 236.84496 * 2 1 3 5 5 C 1.54000 * 105.14208 * 219.50795 * 4 2 1 6 6 N 1.47904 * 107.05624 * 358.77336 * 5 4 2 7 7 C 1.46900 * 110.99854 * 145.84125 * 6 5 4 8 8 C 1.53001 * 109.47166 * 182.47821 * 7 6 5 9 9 N 1.46900 * 109.47296 * 185.00002 * 8 7 6 10 10 C 1.46903 * 110.99647 * 294.30211 * 9 8 7 11 11 C 1.53243 * 109.33697 * 172.74696 * 10 9 8 12 12 N 1.47075 * 108.52067 * 53.82730 * 11 10 9 13 13 C 1.36941 * 120.87703 * 128.83557 * 12 11 10 14 14 H 1.08007 * 119.99991 * 211.47010 * 13 12 11 15 15 C 1.38807 * 120.00308 * 31.47993 * 13 12 11 16 16 N 1.31621 * 119.99677 * 15.17737 * 15 13 12 17 17 Si 1.86797 * 120.00253 * 195.18487 * 15 13 12 18 18 H 1.48502 * 109.46965 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47479 * 119.99547 * 17 15 13 20 20 H 1.48500 * 109.46927 * 239.99932 * 17 15 13 21 21 C 1.47080 * 118.24303 * 308.81444 * 12 11 10 22 22 C 1.46896 * 111.00031 * 169.99956 * 9 8 7 23 23 C 1.48538 * 105.81951 * 25.33059 * 6 5 4 24 24 H 1.09001 * 109.46982 * 179.30052 * 1 2 3 25 25 H 1.08992 * 109.46927 * 299.30132 * 1 2 3 26 26 H 1.08998 * 109.46847 * 59.30399 * 1 2 3 27 27 H 1.09003 * 110.30792 * 338.42084 * 4 2 1 28 28 H 1.08991 * 110.31014 * 100.49319 * 4 2 1 29 29 H 1.08998 * 109.91351 * 118.12170 * 5 4 2 30 30 H 1.08996 * 109.91502 * 239.22571 * 5 4 2 31 31 H 1.08994 * 109.47205 * 302.48115 * 7 6 5 32 32 H 1.09006 * 109.46876 * 62.48142 * 7 6 5 33 33 H 1.09004 * 109.47061 * 304.99610 * 8 7 6 34 34 H 1.08993 * 109.46926 * 64.99480 * 8 7 6 35 35 H 1.09001 * 109.48976 * 292.70711 * 10 9 8 36 36 H 1.08999 * 109.49242 * 52.78888 * 10 9 8 37 37 H 1.08994 * 109.62557 * 294.11535 * 11 10 9 38 38 H 1.08994 * 109.62350 * 173.53904 * 11 10 9 39 39 H 0.97004 * 119.99851 * 180.02562 * 16 15 13 40 40 H 1.08997 * 109.62459 * 291.47982 * 21 12 11 41 41 H 1.08995 * 109.63219 * 170.89539 * 21 12 11 42 42 H 1.08998 * 109.49559 * 307.20841 * 22 9 8 43 43 H 1.08999 * 109.49118 * 67.29119 * 22 9 8 44 44 H 1.08999 * 110.66393 * 202.35384 * 23 6 5 45 45 H 1.08996 * 110.66689 * 79.22819 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9144 1.0200 0.0000 4 6 2.0771 -0.7908 -1.2105 5 6 3.2922 -1.5663 -0.6685 6 7 3.4360 -1.2050 0.7585 7 6 3.9293 -2.3449 1.5430 8 6 4.0062 -1.9525 3.0198 9 7 4.6111 -3.0494 3.7871 10 6 3.7468 -4.2372 3.7782 11 6 4.4883 -5.4093 4.4299 12 7 4.9516 -4.9871 5.7605 13 6 4.6854 -5.7441 6.8702 14 1 4.5491 -5.2669 7.8294 15 6 4.5909 -7.1248 6.7622 16 7 5.0425 -7.7331 5.6859 17 14 3.8229 -8.1193 8.1444 18 1 3.3975 -7.2053 9.2347 19 1 2.6421 -8.8564 7.6269 20 1 4.8189 -9.0869 8.6705 21 6 5.7087 -3.7307 5.8676 22 6 4.9191 -2.6248 5.1592 23 6 2.0821 -0.7939 1.2106 24 1 -0.3633 -1.0276 -0.0125 25 1 -0.3633 0.5029 0.8961 26 1 -0.3633 0.5246 -0.8837 27 1 1.3219 -1.4831 -1.5828 28 1 2.3851 -0.1068 -2.0013 29 1 3.1213 -2.6385 -0.7646 30 1 4.1893 -1.2825 -1.2186 31 1 3.2487 -3.1881 1.4260 32 1 4.9213 -2.6268 1.1899 33 1 4.6161 -1.0553 3.1261 34 1 3.0023 -1.7561 3.3963 35 1 2.8349 -4.0276 4.3373 36 1 3.4926 -4.4943 2.7499 37 1 5.3444 -5.6880 3.8155 38 1 3.8135 -6.2593 4.5298 39 1 4.9761 -8.6979 5.6103 40 1 6.6821 -3.8482 5.3914 41 1 5.8407 -3.4711 6.9179 42 1 5.5151 -1.7125 5.1326 43 1 3.9909 -2.4377 5.6991 44 1 2.1481 -0.1554 2.0916 45 1 1.4623 -1.6673 1.4128 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687820524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:37 Heat of formation + Delta-G solvation = 29.741510 kcal Electronic energy + Delta-G solvation = -21121.347698 eV Core-core repulsion = 18174.059553 eV Total energy + Delta-G solvation = -2947.288145 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.39389 -37.94225 -34.83200 -33.32679 -31.38310 -30.03653 -29.91391 -28.05530 -26.46040 -25.10032 -23.07537 -22.52179 -21.64329 -20.49906 -20.18419 -19.04651 -16.79651 -16.35152 -15.65991 -15.05515 -14.87346 -14.37649 -14.21570 -13.97320 -13.60585 -13.44407 -13.32963 -13.10541 -12.94450 -12.78956 -12.36561 -12.19647 -11.68412 -11.40077 -11.20125 -11.11589 -10.98634 -10.90872 -10.81093 -10.74783 -10.68369 -10.36209 -10.25228 -10.03063 -9.74582 -9.53956 -8.49303 -8.46110 -7.77016 -6.57252 -5.76631 -3.22352 3.37303 3.45043 3.47461 3.81185 4.40134 4.44269 4.51002 4.59156 4.79426 5.04929 5.19941 5.22058 5.28905 5.32234 5.41537 5.45338 5.49153 5.53414 5.56361 5.68574 5.73132 5.80384 5.87424 5.90347 5.93681 5.97017 6.05882 6.11342 6.18954 6.20885 6.29187 6.37182 6.58588 6.72409 6.82923 6.97804 7.01994 7.25248 7.63916 7.68235 7.74826 7.84757 8.48411 9.23799 9.86066 10.47936 11.32052 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.032210 B = 0.003647 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.080171 B = 7674.991845 C = 7858.047434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.081 0.919 4 C -0.127 4.127 5 C 0.036 3.964 6 N -0.518 5.518 7 C 0.052 3.948 8 C 0.060 3.940 9 N -0.532 5.532 10 C 0.034 3.966 11 C 0.182 3.818 12 N -0.595 5.595 13 C -0.255 4.255 14 H 0.064 0.936 15 C 0.005 3.995 16 N -0.901 5.901 17 Si 0.901 3.099 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.289 1.289 21 C 0.149 3.851 22 C 0.047 3.953 23 C 0.038 3.962 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.044 0.956 30 H 0.078 0.922 31 H 0.036 0.964 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.023 0.977 35 H 0.023 0.977 36 H 0.059 0.941 37 H 0.028 0.972 38 H 0.079 0.921 39 H 0.253 0.747 40 H 0.026 0.974 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.026 0.974 44 H 0.080 0.920 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.682 14.292 -12.107 19.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.100 0.900 4 C -0.165 4.165 5 C -0.092 4.092 6 N -0.242 5.242 7 C -0.076 4.076 8 C -0.068 4.068 9 N -0.258 5.258 10 C -0.095 4.095 11 C 0.056 3.944 12 N -0.318 5.318 13 C -0.385 4.385 14 H 0.081 0.919 15 C -0.194 4.194 16 N -0.545 5.545 17 Si 0.731 3.269 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.216 1.216 21 C 0.022 3.978 22 C -0.083 4.083 23 C -0.090 4.090 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.041 0.959 35 H 0.041 0.959 36 H 0.077 0.923 37 H 0.046 0.954 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.044 0.956 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.044 0.956 44 H 0.098 0.902 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -5.839 14.377 -12.267 19.781 hybrid contribution -1.714 -1.122 0.924 2.247 sum -7.552 13.256 -11.344 19.011 Atomic orbital electron populations 1.21775 0.94667 1.01879 1.01791 1.22073 0.95258 0.99769 0.94521 0.90028 1.22487 0.97155 0.98941 0.97931 1.22827 0.98506 0.98238 0.89610 1.64721 1.22951 1.34399 1.02142 1.22292 1.00971 0.90750 0.93596 1.22016 0.97375 0.94921 0.92530 1.61877 1.45105 1.04854 1.13925 1.22934 0.94553 0.92751 0.99311 1.20762 0.96422 0.92346 0.84895 1.44071 1.61237 1.22298 1.04222 1.19193 1.42755 0.87836 0.88674 0.91877 1.25151 0.99975 0.96840 0.97436 1.70039 1.47515 1.08348 1.28570 0.86243 0.78767 0.80121 0.81755 1.20250 1.21586 1.21638 1.20993 0.93324 0.86407 0.97056 1.22601 0.98956 0.98641 0.88088 1.23311 0.89269 0.98553 0.97897 0.92675 0.92445 0.92514 0.91530 0.91158 0.93736 0.90379 0.94621 0.89705 0.90675 0.95860 0.95918 0.92258 0.95430 0.90302 0.93697 0.95633 0.92636 0.91992 0.95603 0.90160 0.93724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.16 37.16 0.34 -0.75 16 2 C -0.10 -0.87 3.65 -88.76 -0.32 -1.19 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 4 C -0.13 -1.10 6.51 -25.37 -0.17 -1.27 16 5 C 0.04 0.38 6.70 -2.75 -0.02 0.36 16 6 N -0.52 -6.34 5.34 -230.45 -1.23 -7.57 16 7 C 0.05 0.73 4.60 -3.82 -0.02 0.71 16 8 C 0.06 0.92 4.70 -3.82 -0.02 0.90 16 9 N -0.53 -9.84 4.63 -234.32 -1.08 -10.93 16 10 C 0.03 0.68 5.46 -3.70 -0.02 0.66 16 11 C 0.18 4.49 5.37 -3.60 -0.02 4.47 16 12 N -0.59 -15.49 3.01 -172.02 -0.52 -16.01 16 13 C -0.25 -7.16 9.58 -15.06 -0.14 -7.30 16 14 H 0.06 1.75 7.87 -52.48 -0.41 1.33 16 15 C 0.01 0.14 4.94 -17.43 -0.09 0.06 16 16 N -0.90 -26.57 11.41 55.49 0.63 -25.94 16 17 Si 0.90 21.89 29.58 -169.99 -5.03 16.86 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 C 0.15 3.28 6.69 -3.60 -0.02 3.25 16 22 C 0.05 0.87 5.62 -3.70 -0.02 0.85 16 23 C 0.04 0.41 4.89 -1.89 -0.01 0.40 16 24 H 0.05 0.43 8.12 -51.93 -0.42 0.01 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.54 7.84 -51.93 -0.41 0.14 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.04 0.48 7.70 -51.93 -0.40 0.08 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.52 6.49 -51.93 -0.34 0.18 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.07 1.11 7.97 -51.93 -0.41 0.70 16 34 H 0.02 0.36 7.19 -51.93 -0.37 -0.02 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 1.09 6.26 -51.93 -0.33 0.76 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 2.14 6.45 -51.93 -0.33 1.80 16 39 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 1.17 7.95 -51.93 -0.41 0.76 16 42 H 0.06 1.01 7.99 -51.93 -0.41 0.59 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.89 7.77 -51.93 -0.40 0.49 16 45 H 0.04 0.52 7.91 -51.93 -0.41 0.11 16 LS Contribution 340.40 15.07 5.13 5.13 Total: -1.00 -29.79 340.40 -11.06 -40.84 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -8.43 Total: -3.55 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -0.53 Total: 1.15 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: -2.20 Total: -60.43 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.79 -11.06 -40.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687820524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.584 kcal (2) G-P(sol) polarization free energy of solvation -29.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds