Wall clock time and date at job start Mon Mar 30 2020 05:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.65014 * 2 1 4 4 C 1.54600 * 110.72662 * 236.84496 * 2 1 3 5 5 C 1.54000 * 105.14208 * 219.50795 * 4 2 1 6 6 N 1.47904 * 107.05624 * 358.77336 * 5 4 2 7 7 C 1.46900 * 110.99854 * 145.84125 * 6 5 4 8 8 C 1.53001 * 109.47166 * 182.47821 * 7 6 5 9 9 N 1.46900 * 109.47296 * 185.00002 * 8 7 6 10 10 C 1.46903 * 110.99647 * 294.30211 * 9 8 7 11 11 C 1.53243 * 109.33697 * 172.74696 * 10 9 8 12 12 N 1.47075 * 108.52067 * 53.82730 * 11 10 9 13 13 C 1.36941 * 120.87703 * 128.83557 * 12 11 10 14 14 H 1.08007 * 119.99991 * 211.47010 * 13 12 11 15 15 C 1.38807 * 120.00308 * 31.47993 * 13 12 11 16 16 N 1.31621 * 119.99677 * 15.17737 * 15 13 12 17 17 Si 1.86797 * 120.00253 * 195.18487 * 15 13 12 18 18 H 1.48502 * 109.46965 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47479 * 119.99547 * 17 15 13 20 20 H 1.48500 * 109.46927 * 239.99932 * 17 15 13 21 21 C 1.47080 * 118.24303 * 308.81444 * 12 11 10 22 22 C 1.46896 * 111.00031 * 169.99956 * 9 8 7 23 23 C 1.48538 * 105.81951 * 25.33059 * 6 5 4 24 24 H 1.09001 * 109.46982 * 179.30052 * 1 2 3 25 25 H 1.08992 * 109.46927 * 299.30132 * 1 2 3 26 26 H 1.08998 * 109.46847 * 59.30399 * 1 2 3 27 27 H 1.09003 * 110.30792 * 338.42084 * 4 2 1 28 28 H 1.08991 * 110.31014 * 100.49319 * 4 2 1 29 29 H 1.08998 * 109.91351 * 118.12170 * 5 4 2 30 30 H 1.08996 * 109.91502 * 239.22571 * 5 4 2 31 31 H 1.08994 * 109.47205 * 302.48115 * 7 6 5 32 32 H 1.09006 * 109.46876 * 62.48142 * 7 6 5 33 33 H 1.09004 * 109.47061 * 304.99610 * 8 7 6 34 34 H 1.08993 * 109.46926 * 64.99480 * 8 7 6 35 35 H 1.09001 * 109.48976 * 292.70711 * 10 9 8 36 36 H 1.08999 * 109.49242 * 52.78888 * 10 9 8 37 37 H 1.08994 * 109.62557 * 294.11535 * 11 10 9 38 38 H 1.08994 * 109.62350 * 173.53904 * 11 10 9 39 39 H 0.97004 * 119.99851 * 180.02562 * 16 15 13 40 40 H 1.08997 * 109.62459 * 291.47982 * 21 12 11 41 41 H 1.08995 * 109.63219 * 170.89539 * 21 12 11 42 42 H 1.08998 * 109.49559 * 307.20841 * 22 9 8 43 43 H 1.08999 * 109.49118 * 67.29119 * 22 9 8 44 44 H 1.08999 * 110.66393 * 202.35384 * 23 6 5 45 45 H 1.08996 * 110.66689 * 79.22819 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9144 1.0200 0.0000 4 6 2.0771 -0.7908 -1.2105 5 6 3.2922 -1.5663 -0.6685 6 7 3.4360 -1.2050 0.7585 7 6 3.9293 -2.3449 1.5430 8 6 4.0062 -1.9525 3.0198 9 7 4.6111 -3.0494 3.7871 10 6 3.7468 -4.2372 3.7782 11 6 4.4883 -5.4093 4.4299 12 7 4.9516 -4.9871 5.7605 13 6 4.6854 -5.7441 6.8702 14 1 4.5491 -5.2669 7.8294 15 6 4.5909 -7.1248 6.7622 16 7 5.0425 -7.7331 5.6859 17 14 3.8229 -8.1193 8.1444 18 1 3.3975 -7.2053 9.2347 19 1 2.6421 -8.8564 7.6269 20 1 4.8189 -9.0869 8.6705 21 6 5.7087 -3.7307 5.8676 22 6 4.9191 -2.6248 5.1592 23 6 2.0821 -0.7939 1.2106 24 1 -0.3633 -1.0276 -0.0125 25 1 -0.3633 0.5029 0.8961 26 1 -0.3633 0.5246 -0.8837 27 1 1.3219 -1.4831 -1.5828 28 1 2.3851 -0.1068 -2.0013 29 1 3.1213 -2.6385 -0.7646 30 1 4.1893 -1.2825 -1.2186 31 1 3.2487 -3.1881 1.4260 32 1 4.9213 -2.6268 1.1899 33 1 4.6161 -1.0553 3.1261 34 1 3.0023 -1.7561 3.3963 35 1 2.8349 -4.0276 4.3373 36 1 3.4926 -4.4943 2.7499 37 1 5.3444 -5.6880 3.8155 38 1 3.8135 -6.2593 4.5298 39 1 4.9761 -8.6979 5.6103 40 1 6.6821 -3.8482 5.3914 41 1 5.8407 -3.4711 6.9179 42 1 5.5151 -1.7125 5.1326 43 1 3.9909 -2.4377 5.6991 44 1 2.1481 -0.1554 2.0916 45 1 1.4623 -1.6673 1.4128 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687820524.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:37 Heat of formation + Delta-G solvation = 10.021213 kcal Electronic energy + Delta-G solvation = -21122.202834 eV Core-core repulsion = 18174.059553 eV Total energy + Delta-G solvation = -2948.143282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.201 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.39627 -39.43470 -36.46321 -34.53634 -33.14612 -31.69782 -31.05530 -29.33835 -27.70704 -26.41832 -24.73791 -24.26370 -22.76478 -21.52361 -21.10130 -20.75100 -18.72958 -17.40652 -16.90004 -16.54408 -16.27283 -15.89268 -15.49090 -15.35075 -15.24707 -14.99258 -14.74907 -14.32429 -13.94501 -13.82792 -13.61610 -13.29001 -12.99662 -12.97027 -12.68144 -12.65544 -12.42834 -12.18051 -12.07381 -12.00379 -11.86479 -11.77561 -11.58684 -11.57467 -11.40825 -11.31535 -10.62399 -9.44497 -9.27666 -8.64853 -7.90005 -5.40192 1.44747 1.45846 1.57208 2.48528 2.71037 3.24571 3.29613 3.65252 3.66642 3.73276 3.93066 4.11073 4.16069 4.27028 4.30119 4.32368 4.48024 4.52914 4.55544 4.59593 4.62396 4.67163 4.71915 4.78533 4.83151 4.86368 4.93276 4.99464 5.01310 5.03269 5.08503 5.18011 5.23050 5.28998 5.31274 5.43693 5.60652 5.61390 5.92403 6.00360 6.16496 6.26160 6.37327 7.11568 7.80268 8.37903 9.16832 Molecular weight = 267.20amu Principal moments of inertia in cm(-1) A = 0.032210 B = 0.003647 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.080171 B = 7674.991845 C = 7858.047434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 H 0.085 0.915 4 C -0.123 4.123 5 C 0.032 3.968 6 N -0.523 5.523 7 C 0.061 3.939 8 C 0.069 3.931 9 N -0.541 5.541 10 C 0.053 3.947 11 C 0.191 3.809 12 N -0.614 5.614 13 C -0.269 4.269 14 H 0.065 0.935 15 C -0.047 4.047 16 N -0.934 5.934 17 Si 0.970 3.030 18 H -0.266 1.266 19 H -0.288 1.288 20 H -0.290 1.290 21 C 0.144 3.856 22 C 0.057 3.943 23 C 0.034 3.966 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.038 0.962 30 H 0.083 0.917 31 H 0.026 0.974 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.027 0.973 35 H 0.017 0.983 36 H 0.076 0.924 37 H 0.000 1.000 38 H 0.048 0.952 39 H 0.251 0.749 40 H 0.016 0.984 41 H 0.061 0.939 42 H 0.095 0.905 43 H 0.023 0.977 44 H 0.079 0.921 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.649 16.098 -12.486 21.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.112 4.112 3 H 0.103 0.897 4 C -0.161 4.161 5 C -0.096 4.096 6 N -0.248 5.248 7 C -0.068 4.068 8 C -0.059 4.059 9 N -0.267 5.267 10 C -0.077 4.077 11 C 0.064 3.936 12 N -0.339 5.339 13 C -0.399 4.399 14 H 0.083 0.917 15 C -0.243 4.243 16 N -0.579 5.579 17 Si 0.798 3.202 18 H -0.190 1.190 19 H -0.215 1.215 20 H -0.217 1.217 21 C 0.019 3.981 22 C -0.072 4.072 23 C -0.094 4.094 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.044 0.956 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.045 0.955 35 H 0.035 0.965 36 H 0.095 0.905 37 H 0.018 0.982 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.034 0.966 41 H 0.080 0.920 42 H 0.113 0.887 43 H 0.041 0.959 44 H 0.097 0.903 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.807 16.224 -12.652 21.671 hybrid contribution -1.352 -1.635 1.017 2.353 sum -8.159 14.589 -11.636 20.367 Atomic orbital electron populations 1.21751 0.93608 1.01855 1.02582 1.22065 0.96089 0.99544 0.93469 0.89653 1.22487 0.96406 0.99061 0.98110 1.22916 0.99733 0.98282 0.88686 1.64725 1.23800 1.33359 1.02888 1.22121 1.00399 0.91167 0.93086 1.21989 0.97427 0.93852 0.92626 1.61820 1.45226 1.05444 1.14186 1.22581 0.93584 0.91963 0.99549 1.20511 0.95021 0.93371 0.84647 1.44362 1.62134 1.23337 1.04035 1.19523 1.42507 0.88483 0.89430 0.91725 1.25947 1.00618 0.97854 0.99896 1.70194 1.48832 1.08347 1.30566 0.85176 0.77567 0.78424 0.79073 1.19019 1.21498 1.21669 1.21137 0.93052 0.85930 0.97999 1.22457 0.98731 0.98269 0.87747 1.23366 0.88610 0.98458 0.98925 0.93114 0.92202 0.91202 0.90950 0.89720 0.94321 0.89883 0.95563 0.90598 0.89557 0.95502 0.96525 0.90545 0.98226 0.93384 0.94002 0.96643 0.92019 0.88722 0.95890 0.90253 0.94637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.16 71.98 0.66 -1.16 16 2 C -0.09 -1.44 3.65 -9.59 -0.03 -1.48 16 3 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 4 C -0.12 -1.84 6.51 31.48 0.20 -1.63 16 5 C 0.03 0.61 6.70 86.45 0.58 1.19 16 6 N -0.52 -11.94 5.34 -883.00 -4.71 -16.65 16 7 C 0.06 1.62 4.60 86.30 0.40 2.02 16 8 C 0.07 1.97 4.70 86.30 0.41 2.37 16 9 N -0.54 -19.37 4.63 -895.24 -4.14 -23.51 16 10 C 0.05 2.11 5.46 86.38 0.47 2.59 16 11 C 0.19 9.69 5.37 86.35 0.46 10.16 16 12 N -0.61 -32.48 3.01 -698.15 -2.10 -34.58 16 13 C -0.27 -15.30 9.58 84.03 0.81 -14.49 16 14 H 0.07 3.58 7.87 -2.91 -0.02 3.55 16 15 C -0.05 -2.70 4.94 84.86 0.42 -2.28 16 16 N -0.93 -56.57 11.41 21.65 0.25 -56.32 16 17 Si 0.97 45.47 29.58 68.60 2.03 47.50 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 19 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 20 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 21 C 0.14 6.32 6.69 86.35 0.58 6.90 16 22 C 0.06 2.04 5.62 86.39 0.49 2.53 16 23 C 0.03 0.69 4.89 86.65 0.42 1.12 16 24 H 0.05 0.70 8.12 -2.39 -0.02 0.69 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.07 1.01 7.84 -2.39 -0.02 0.99 16 28 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.04 0.79 7.70 -2.39 -0.02 0.77 16 30 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.03 0.74 6.49 -2.39 -0.02 0.73 16 32 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 33 H 0.09 2.31 7.97 -2.38 -0.02 2.30 16 34 H 0.03 0.76 7.19 -2.39 -0.02 0.75 16 35 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.08 2.79 6.26 -2.39 -0.01 2.77 16 37 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H 0.05 2.70 6.45 -2.39 -0.02 2.69 16 39 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 40 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.06 2.57 7.95 -2.39 -0.02 2.55 16 42 H 0.09 2.79 7.99 -2.39 -0.02 2.77 16 43 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.08 1.61 7.77 -2.39 -0.02 1.59 16 45 H 0.04 0.79 7.91 -2.39 -0.02 0.77 16 Total: -1.00 -64.21 340.40 -1.91 -66.12 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 0.92 Total: 9.64 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 5.86 Total: 7.82 kcal Atomic # 7 Polarization: -120.36 SS G_CDS: -10.72 Total: -131.07 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -64.21 -1.91 -66.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687820524.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.144 kcal (2) G-P(sol) polarization free energy of solvation -64.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds