Wall clock time and date at job start Mon Mar 30 2020 04:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47259 * 2 1 4 4 N 1.46500 * 109.47133 * 119.99906 * 2 1 3 5 5 C 1.36940 * 119.99558 * 302.02696 * 4 2 1 6 6 H 1.08000 * 120.00423 * 321.84087 * 5 4 2 7 7 C 1.38819 * 119.99893 * 141.85058 * 5 4 2 8 8 N 1.31618 * 119.99583 * 338.54860 * 7 5 4 9 9 Si 1.86795 * 120.00223 * 158.54960 * 7 5 4 10 10 H 1.48503 * 109.47222 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47312 * 119.99698 * 9 7 5 12 12 H 1.48501 * 109.47051 * 239.99719 * 9 7 5 13 13 C 1.46496 * 120.00279 * 122.02885 * 4 2 1 14 14 C 1.50691 * 109.47335 * 89.99762 * 13 4 2 15 15 N 1.33321 * 126.54782 * 89.97484 * 14 13 4 16 16 N 1.29001 * 107.35384 * 180.02562 * 15 14 13 17 17 N 1.28786 * 108.72670 * 0.02562 * 16 15 14 18 18 C 1.46497 * 125.45103 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.46787 * 0.02576 * 18 17 16 20 20 C 1.53001 * 109.47087 * 240.02447 * 18 17 16 21 21 C 1.53000 * 109.47133 * 120.02562 * 18 17 16 22 22 N 1.28884 * 109.09874 * 0.22480 * 17 16 15 23 23 H 1.09003 * 109.46814 * 305.39116 * 1 2 3 24 24 H 1.08999 * 109.47145 * 65.38782 * 1 2 3 25 25 H 1.09001 * 109.47429 * 185.39363 * 1 2 3 26 26 H 1.08997 * 109.47124 * 239.99476 * 2 1 3 27 27 H 1.09005 * 109.47137 * 179.97438 * 3 2 1 28 28 H 1.09011 * 109.46696 * 299.97000 * 3 2 1 29 29 H 1.08990 * 109.47610 * 59.97174 * 3 2 1 30 30 H 0.97005 * 119.99589 * 180.02562 * 8 7 5 31 31 H 1.08997 * 109.47157 * 329.99724 * 13 4 2 32 32 H 1.09004 * 109.47012 * 210.00329 * 13 4 2 33 33 H 1.09005 * 109.47090 * 299.99539 * 19 18 17 34 34 H 1.09005 * 109.47137 * 180.02562 * 19 18 17 35 35 H 1.08999 * 109.47685 * 60.00025 * 19 18 17 36 36 H 1.08995 * 109.47004 * 179.97438 * 20 18 17 37 37 H 1.08997 * 109.47088 * 300.00035 * 20 18 17 38 38 H 1.09003 * 109.46693 * 60.00068 * 20 18 17 39 39 H 1.08999 * 109.46867 * 299.99686 * 21 18 17 40 40 H 1.08997 * 109.47198 * 59.99869 * 21 18 17 41 41 H 1.08995 * 109.46753 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6536 -0.2473 2.4395 6 1 1.5755 0.8122 2.6337 7 6 1.3843 -1.1599 3.4503 8 7 1.0635 -2.4003 3.1487 9 14 1.4774 -0.6276 5.2384 10 1 1.8564 0.8065 5.3089 11 1 0.1535 -0.8224 5.8824 12 1 2.4967 -1.4439 5.9454 13 6 2.8969 -1.8552 1.0623 14 6 4.3337 -1.4013 1.0454 15 7 5.1320 -1.2531 2.1028 16 7 6.2771 -0.8496 1.6669 17 7 6.2172 -0.7426 0.3849 18 6 7.3149 -0.3111 -0.4840 19 6 8.5491 -0.0059 0.3672 20 6 6.8971 0.9480 -1.2463 21 6 7.6448 -1.4245 -1.4801 22 7 5.0354 -1.0710 -0.0109 23 1 -0.3633 0.5952 0.8378 24 1 -0.3633 0.4280 -0.9343 25 1 -0.3634 -1.0231 0.0966 26 1 1.8933 -0.5139 -0.8899 27 1 3.1301 1.4425 0.0005 28 1 1.6771 1.9561 -0.8904 29 1 1.6764 1.9565 0.8896 30 1 0.8750 -3.0379 3.8551 31 1 2.6697 -2.3768 0.1326 32 1 2.7384 -2.5286 1.9047 33 1 8.3141 0.7874 1.0768 34 1 9.3658 0.3157 -0.2792 35 1 8.8468 -0.9028 0.9103 36 1 7.7139 1.2693 -1.8924 37 1 6.0177 0.7305 -1.8526 38 1 6.6620 1.7412 -0.5366 39 1 7.9425 -2.3214 -0.9369 40 1 6.7655 -1.6419 -2.0864 41 1 8.4618 -1.1035 -2.1262 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690531965.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:25 Heat of formation + Delta-G solvation = 117.940674 kcal Electronic energy + Delta-G solvation = -21657.841977 eV Core-core repulsion = 18610.838091 eV Total energy + Delta-G solvation = -3047.003886 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.175 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -45.05915 -38.70603 -38.12582 -34.38521 -34.20865 -33.57619 -31.37737 -28.70104 -28.47280 -27.94481 -27.78286 -25.60934 -25.12555 -22.75480 -21.52147 -21.16690 -18.50019 -17.96888 -17.74886 -16.87820 -16.04730 -15.79636 -15.45222 -15.12097 -15.02822 -14.71384 -14.37196 -13.93825 -13.76645 -13.40111 -13.24432 -13.21084 -13.16444 -13.01191 -12.82586 -12.75714 -12.66390 -12.48633 -12.32686 -12.26032 -12.07633 -11.86694 -11.82058 -11.62758 -11.59685 -11.39733 -10.75559 -10.50663 -8.62067 -7.86754 -5.44700 0.45133 1.19666 1.39420 1.45874 1.49756 1.55391 2.51751 3.10101 3.30392 3.55021 3.59268 3.68181 3.69690 3.90138 4.29963 4.49677 4.54986 4.56259 4.56407 4.63589 4.69754 4.74490 4.74639 4.86778 4.90688 4.92379 5.01253 5.07297 5.11049 5.14343 5.15602 5.16449 5.29673 5.48582 5.54860 5.61044 5.68806 5.77632 6.49028 7.14760 7.65907 7.82099 8.35274 9.13709 Molecular weight = 267.18amu Principal moments of inertia in cm(-1) A = 0.020459 B = 0.006646 C = 0.005703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.272624 B = 4212.319160 C = 4908.440881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.157 3.843 3 C -0.137 4.137 4 N -0.574 5.574 5 C -0.252 4.252 6 H 0.047 0.953 7 C -0.016 4.016 8 N -0.906 5.906 9 Si 0.942 3.058 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.293 1.293 13 C 0.236 3.764 14 C 0.164 3.836 15 N -0.322 5.322 16 N -0.095 5.095 17 N -0.126 5.126 18 C 0.160 3.840 19 C -0.146 4.146 20 C -0.150 4.150 21 C -0.149 4.149 22 N -0.315 5.315 23 H 0.036 0.964 24 H 0.068 0.932 25 H 0.033 0.967 26 H 0.061 0.939 27 H 0.023 0.977 28 H 0.073 0.927 29 H 0.035 0.965 30 H 0.253 0.747 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.058 0.942 34 H 0.127 0.873 35 H 0.063 0.937 36 H 0.128 0.872 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.140 4.773 -12.731 18.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.052 3.948 3 C -0.196 4.196 4 N -0.294 5.294 5 C -0.383 4.383 6 H 0.065 0.935 7 C -0.215 4.215 8 N -0.550 5.550 9 Si 0.771 3.229 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.220 1.220 13 C 0.105 3.895 14 C -0.121 4.121 15 N -0.192 5.192 16 N -0.087 5.087 17 N -0.043 5.043 18 C 0.080 3.920 19 C -0.204 4.204 20 C -0.209 4.209 21 C -0.208 4.208 22 N -0.167 5.167 23 H 0.056 0.944 24 H 0.087 0.913 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.042 0.958 28 H 0.091 0.909 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.145 0.855 35 H 0.082 0.918 36 H 0.146 0.854 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 13.677 4.828 -12.405 19.085 hybrid contribution -0.623 -0.080 1.367 1.504 sum 13.054 4.748 -11.039 17.743 Atomic orbital electron populations 1.21901 0.96406 1.00466 1.00323 1.20662 0.93363 0.92297 0.88516 1.21977 0.98783 0.98019 1.00835 1.43926 1.50145 1.33218 1.02123 1.18869 1.40712 0.90784 0.87898 0.93542 1.25596 0.98164 0.96463 1.01262 1.70033 1.47709 1.04926 1.32303 0.85632 0.76911 0.77831 0.82555 1.20265 1.21061 1.22028 1.19233 0.77355 0.90849 1.02089 1.27627 1.01049 0.99848 0.83621 1.75827 0.97480 1.17899 1.27961 1.78717 1.18084 1.16606 0.95299 1.51005 1.09338 1.38850 1.05060 1.21940 0.82464 0.97822 0.89726 1.22095 0.94923 1.03042 1.00329 1.22214 1.04507 0.93740 1.00412 1.22212 1.04325 0.96165 0.98063 1.74527 0.93889 1.20339 1.27988 0.94445 0.91276 0.94731 0.92032 0.95817 0.90859 0.94565 0.93711 0.91574 0.89169 0.92322 0.85457 0.91788 0.85360 0.91839 0.93280 0.92574 0.91733 0.85444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.19 9.04 71.98 0.65 -4.54 16 2 C 0.16 6.53 3.36 44.99 0.15 6.69 16 3 C -0.14 -5.22 9.19 71.98 0.66 -4.56 16 4 N -0.57 -28.59 2.34 -682.36 -1.60 -30.19 16 5 C -0.25 -13.94 8.24 84.03 0.69 -13.25 16 6 H 0.05 2.65 6.95 -2.91 -0.02 2.63 16 7 C -0.02 -0.92 4.95 84.86 0.42 -0.50 16 8 N -0.91 -52.61 11.52 21.65 0.25 -52.36 16 9 Si 0.94 46.94 29.60 68.60 2.03 48.97 16 10 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 11 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 12 H -0.29 -14.94 7.11 99.48 0.71 -14.24 16 13 C 0.24 11.59 5.89 85.63 0.50 12.09 16 14 C 0.16 7.63 7.95 138.55 1.10 8.73 16 15 N -0.32 -15.80 12.50 -51.27 -0.64 -16.44 16 16 N -0.09 -3.93 12.24 37.02 0.45 -3.48 16 17 N -0.13 -4.40 3.73 -152.39 -0.57 -4.97 16 18 C 0.16 3.49 1.30 3.60 0.00 3.50 16 19 C -0.15 -2.53 7.91 71.98 0.57 -1.96 16 20 C -0.15 -2.75 8.66 71.98 0.62 -2.12 16 21 C -0.15 -2.50 8.67 71.98 0.62 -1.87 16 22 N -0.32 -12.55 11.83 -51.20 -0.61 -13.15 16 23 H 0.04 1.57 7.80 -2.39 -0.02 1.55 16 24 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.06 2.40 7.78 -2.39 -0.02 2.38 16 27 H 0.02 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 29 H 0.04 1.48 7.07 -2.39 -0.02 1.46 16 30 H 0.25 14.27 8.31 -92.70 -0.77 13.50 16 31 H 0.07 2.99 7.90 -2.39 -0.02 2.98 16 32 H 0.09 5.05 5.56 -2.38 -0.01 5.04 16 33 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.13 1.05 8.14 -2.38 -0.02 1.04 16 35 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -69.46 337.45 6.31 -63.15 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: 0.99 Total: 6.27 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: 6.00 Total: 2.21 kcal Atomic # 7 Polarization: -117.88 SS G_CDS: -2.71 Total: -120.59 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Total: -69.46 6.31 -63.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690531965.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.086 kcal (2) G-P(sol) polarization free energy of solvation -69.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds